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PSG3 Gene

protein-coding   GIFtS: 51
GCID: GC19M043225

Pregnancy Specific Beta-1-Glycoprotein 3

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Pregnancy Specific Beta-1-Glycoprotein 31 2
Carcinoembryonic Antigen SG52 3
Pregnancy-Specific Glycoprotein 32 3
PS-beta-G-32 3
PSBG-32 3
Pregnancy-Specific Beta-1-Glycoprotein 32

External Ids:    HGNC: 95201   Entrez Gene: 56712   Ensembl: ENSG000002218267   OMIM: 1763925   UniProtKB: Q165573   

Export aliases for PSG3 gene to outside databases

Previous GC identifers: GC19M043874 GC19M043617 GC19M047901 GC19M047917 GC19M039655


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for PSG3 Gene:
The human pregnancy-specific glycoproteins (PSGs) are a family of proteins that are synthesized in large amounts
by placental trophoblasts and released into the maternal circulation during pregnancy. Molecular cloning and
analysis of several PSG genes has indicated that the PSGs form a subgroup of the carcinoembryonic antigen (CEA)
gene family, which belongs to the immunoglobulin superfamily of genes. Members of the CEA family consist of a
single N domain, with structural similarity to the immunoglobulin variable domains, followed by a variable number
of immunoglobulin constant-like A and/or B domains. Most PSGs have an arg-gly-asp (RGD) motif, which has been
shown to function as an adhesion recognition signal for several integrins, in the N-terminal domain (summary by
Teglund et al., 1994 (PubMed 7851896)). For additional general information about the PSG gene family, see PSG1
(MIM 176390).(supplied by OMIM, Oct 2009)

GeneCards Summary for PSG3 Gene:
PSG3 (pregnancy specific beta-1-glycoprotein 3) is a protein-coding gene. An important paralog of this gene is PSG9.

Gene Wiki entry for PSG3 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000019.9  NC_018930.2  NT_011109.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the PSG3 gene promoter:
         NCX/Ncx   p300   POU3F1   RelA   NF-kappaB   RORalpha2   AREB6   c-Myb   NF-kappaB1   Ik-1   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for PSG3

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat PSG3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.2   Ensembl cytogenetic band:  19q13.2   HGNC cytogenetic band: 19q13.2

PSG3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
PSG3 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M043225:  view genomic region     (about GC identifiers)

Start:
43,225,790 bp from pter      End:
43,244,721 bp from pter
Size:
18,932 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: PSG3_HUMAN, Q16557 (See protein sequence)
Recommended Name: Pregnancy-specific beta-1-glycoprotein 3 precursor  
Size: 428 amino acids; 47945 Da
Developmental stage: PSBG are produced in high quantity during pregnancy
Secondary accessions: Q08265 Q9BRW2 Q9UPL4 Q9UQ77

Explore the universe of human proteins at neXtProt for PSG3: NX_Q16557

Explore proteomics data for PSG3 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn104, Asn111, Asn268, Asn303
  • Modification sites at PhosphoSitePlus

  • See PSG3 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_066296.2  
    ENSEMBL proteins: 
     ENSP00000469292   ENSP00000332215   ENSP00000468936  

    PSG3 Human Recombinant Protein Products:

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    Cloud-Clone Corp. Proteins for PSG3

     
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    antibodies-online proteins for PSG3 (2 products) 

     
    antibodies-online peptides for PSG3

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    antibodies-online antibodies for PSG3 (15 products) 

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    IGD: Immunoglobulin superfamily / Immunoglobulin-like domain containing
    VSET: Immunoglobulin superfamily / V-set domain containing

    5 InterPro protein domains:
     IPR003598 Ig_sub2
     IPR013783 Ig-like_fold
     IPR013106 Ig_V-set
     IPR007110 Ig-like_dom
     IPR003599 Ig_sub

    Graphical View of Domain Structure for InterPro Entry Q16557

    ProtoNet protein and cluster: Q16557

    2 Blocks protein domains:
    IPB003598 Immunoglobulin C-2 type
    IPB013106 Immunoglobulin V-set


    UniProtKB/Swiss-Prot: PSG3_HUMAN, Q16557
    Similarity: Belongs to the immunoglobulin superfamily. CEA family
    Similarity: Contains 3 Ig-like C2-type (immunoglobulin-like) domains
    Similarity: Contains 1 Ig-like V-type (immunoglobulin-like) domain


    Find genes that share domains with PSG3           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:
         Genatlas biochemistry entry for PSG3:
    pregnancy specific beta-1-glycoprotein 3,expressed by placental syncytiotrophoblasts,unknown
    function,carcinoembryonic antigen (CEA family),immunoglobulin superfamily

         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
         
    Find genes that share ontologies with PSG3           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for PSG3

    miRNA
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    miRTarBase miRNAs that target PSG3:
    hsa-mir-124-3p (MIRT022401), hsa-mir-1 (MIRT023649)

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    PSG3_HUMAN, Q16557: Secreted (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular5
    mitochondrion2
    cytosol1
    plasma membrane1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region IEA--

    Find genes that share ontologies with PSG3           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for PSG3
    Interactions:

        Search GeneGlobe Interaction Network for PSG3

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    Selected Interacting proteins for PSG3 (Q165572, 3 ENSP000003322154) via UniProtKB, MINT, STRING, and/or I2D (see all 8)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ATF7IPQ6VMQ62, 3MINT-61930 I2D: score=3 
    SKILP127572, 3MINT-61693 I2D: score=3 
    PRKD2Q9BZL62, 3MINT-61766 I2D: score=2 
    FAM46AQ96IP43I2D: score=2 
    CAB39ENSP000002584184STRING: ENSP00000258418
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006952defense response TAS2341148
    GO:0007565female pregnancy TAS2341148

    Find genes that share ontologies with PSG3           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for PSG3



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for PSG3 gene: 
    NM_021016.3  

    Unigene Cluster for PSG3:

    Pregnancy specific beta-1-glycoprotein 3
    Hs.654413  [show with all ESTs]
    Unigene Representative Sequence: S59494
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000594378 ENST00000327495(uc002oue.3 uc002ouf.3) ENST00000595140
    ENST00000597009 ENST00000490592
    miRNA
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    Inhib. RNA
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      QuantiFast Probe-based Assays in human, mouse, rat PSG3

    Additional mRNA sequence: 

    AB019570.1 BC005924.1 M27907.1 M30628.1 M34420.1 M37399.1 M93061.1 S59493.1 
    S59494.1 

    Selected DOTS entries (see all 83):

    DT.40123361  DT.91726544  DT.100884371  DT.91806732  DT.100643170  DT.121424914  DT.92415484  DT.121424082 
    DT.100884334  DT.100884321  DT.100884373  DT.121424297  DT.100729148  DT.91781740  DT.91641063  DT.91933184 
    DT.100884375  DT.100884409  DT.102844189  DT.91896418  DT.121644100  DT.121424052  DT.92046153  DT.121424654 

    Selected AceView cDNA sequences (see all 28):

    H62033 CR596325 CR625118 T29368 CR623537 CR613711 CR594229 CR605585 
    M37399 BE767902 M30628 M34420 BC005924 S59494 NM_021016 M27907 
    BG005643 AA368375 BG621332 AA367500 BG434286 BX097191 NM_002785 CR617319 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    PSG3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AAATTCAAGA
    PSG3 Expression
    About this image


    PSG3 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 5) fully expand
     
     Fibroblasts
             Detroit 551
     
     Epidermis (Integumentary System)
             Detroit 551
     
     Blood (Hematopoietic System)
             Granulocytes Peripheral Blood
     
     Esophagus (Gastrointestinal Tract)
     
     Placenta (Extraembryonic Tissues)
    PSG3 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    PSG3 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.654413
        Custom PCR Arrays for PSG3
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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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      --

    ENSEMBL Gene Tree for PSG3 (if available)
    TreeFam Gene Tree for PSG3 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for PSG3 gene
    PSG92  PSG82  CEACAM42  CEACAM52  PSG112  CEACAM72  CEACAM212  PSG12  
    PSG52  PSG62  ENSG000002678812  CEACAM82  CEACAM12  CEACAM62  CEACAM182  PSG22  
    CEACAM162  PSG42  PSG72  CEACAM32  
    Selected SIMAP similar genes for PSG3 using alignment to 3 protein entries:     PSG3_HUMAN (see all proteins) (see all similar genes):
    DHFRP2    PSG7    PSG    PSGII    PSG8    PSG6
    PSG4    PSG11    SP1    PSG5    PSG1    CEA
    CEACAM7    CEACAM3    PSG9    CEACAM4    PSG2    CEACAM21

    Find genes that share paralogs with PSG3           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for PSG3 (see all 807)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1877263151,2
    --43225396(+) GTAACA/GGGTGT 1 -- int10--------
    rs1511819931,2
    C--43225505(+) TGAGTC/TTCACC 1 -- int10--------
    rs1922850171,2
    --43225578(+) TTAAAC/TTCCCC 1 -- int10--------
    rs1842612771,2
    --43225583(+) CTCCCC/TTTTGC 1 -- int10--------
    rs1172409331,2
    C,F--43225590(+) TTGCTG/AGAAGT 1 -- int11Minor allele frequency- A:0.01NA 120
    rs1897323241,2
    --43225636(+) CTCTTC/GAGACT 1 -- int10--------
    rs1929457891,2
    --43225758(+) GTTTTA/CAAATG 1 -- int10--------
    rs1115837111,2
    C,F--43225806(+) GTGCAA/GATAAC 1 -- ut311Minor allele frequency- G:0.00CSA 1
    rs122681,2
    C,F,H--43226023(-) TATTGG/TACTAA 1 -- ut3110Minor allele frequency- T:0.01MN NS EA NA 1400
    rs2009424471,2
    --43226034(+) AAATT-/GGGTTT 1 -- ut310--------

    HapMap Linkage Disequilibrium report for PSG3 (43225790 - 43244721 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for PSG3 (see all 17):    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2422471CNV Deletion17116639
    dgv15e196CNV Deletion17116639
    dgv564e201CNV Deletion23290073
    dgv141e55CNV Loss17911159
    nsv510768CNV Loss20534489
    dgv3890n71CNV Gain21882294
    nsv833835CNV Gain17160897
    dgv140e55CNV Gain17911159
    nsv482222CNV Gain20164927
    nsv911809CNV Gain21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing PSG3
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 176392    OMIM disorders: --


    Find genes that share disorders with PSG3           About GenesLikeMe


    Export disorders for PSG3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for PSG3 gene, integrated from 10 sources (see all 14):
    (articles sorted by number of sources associating them with PSG3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Structure, evolution and chromosomal localization of the human pregnancy-specific beta 1 glycoprotein gene family. (PubMed id 2341148)1, 2, 3 Streydio C.... Vassart G. (Genomics 1990)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)1, 2 Grimwood J.... Lucas S.M. (Nature 2004)
    4. Pregnancy specific beta 1-glycoprotein in human intestine. (PubMed id 8487756)1, 2 Shupert W.L. and Chan W.Y. (Mol. Cell. Biochem. 1993)
    5. Expression of the pregnancy-specific beta 1-glycoprotein genes in human testis. (PubMed id 2302228)1, 2 Borjigin J.... Chan W.-Y. (Biochem. Biophys. Res. Commun. 1990)
    6. Structure, evolution and chromosomal localization of the human pregnancy-specific beta 1-glycoprotein gene family. (PubMed id 2387594)1, 2 Streydio C....Vassart G. (Genomics 1990)
    7. Carcinoembryonic antigen gene family members in submandibular salivary gland: demonstration of pregnancy-specific glycoproteins by cDNA cloning. (PubMed id 2350345)1, 2 Zoubir F.... Hammarstroem S. (Biochem. Biophys. Res. Commun. 1990)
    8. Molecular cloning of a cDNA for human pregnancy-specific beta 1- glycoprotein: homology with human carcinoembryonic antigen and related proteins. (PubMed id 3265688)1, 2 Rooney B.C.... Hardman N. (Gene 1988)
    9. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
    10. Functional proteomics mapping of a human signaling pathway. (PubMed id 15231748)1 Colland F....Gauthier J.M. (Genome Res. 2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 5671 HGNC: 9520 AceView: PSG3 Ensembl:ENSG00000221826 euGenes: HUgn5671
    ECgene: PSG3 H-InvDB: PSG3

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for PSG3 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for PSG3 gene:
    Search GeneIP for patents involving PSG3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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