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Aliases for PSD2-AS1 Gene

Subcategory (RNA class) for PSD2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PSD2-AS1 Gene

  • PSD2 Antisense RNA 1 2 3 5
  • CTB-35F21.2 3

External Ids for PSD2-AS1 Gene

Summaries for PSD2-AS1 Gene

GeneCards Summary for PSD2-AS1 Gene

PSD2-AS1 (PSD2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PSD2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PSD2-AS1 Gene

Genomics for PSD2-AS1 Gene

Regulatory Elements for PSD2-AS1 Gene

Enhancers for PSD2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H139744 1.6 Ensembl ENCODE dbSUPER 0.7 -0.2 -178 4.7 HDGF PKNOX1 SIN3A FEZF1 DMAP1 YBX1 ZNF2 YY1 ZNF416 ZNF143 HARS2 ANKHD1 WDR55 VTRNA1-1 TMCO6 MALINC1 IK PSD2 PURA LOC101929719
GH05H139742 1.3 Ensembl ENCODE dbSUPER 0.7 +3.6 3616 1.1 ELF3 PKNOX1 FOXA2 PTBP1 ARID4B DMAP1 ZSCAN9 RARA MIXL1 TGIF2 PSD2 PSD2-AS1 GC05M139726
GH05H139733 1.5 FANTOM5 ENCODE dbSUPER 0.4 +12.2 12186 1.8 ELF3 TBP MLX ZFP64 ARID4B DMAP1 RAD21 THRB ZSCAN9 RARA PSD2 IGIP GC05M139726 PSD2-AS1
GH05H139748 0.7 dbSUPER 0.7 -3.0 -2960 0.7 NFIA NFIB ZBTB8A ZNF491 ZIC2 OSR2 LCORL NFIC ZNF624 ZNF300 PURA PSD2 PSD2-AS1 PIR36769
GH05H139755 1.2 Ensembl dbSUPER 0.4 -9.8 -9793 1.7 HDGF PKNOX1 ZSCAN4 KLF17 FEZF1 ZNF2 THRB GLIS2 ZNF366 ZSCAN5C PURA PSD2 HARS2 PIR36769 PSD2-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PSD2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PSD2-AS1 Gene

Genomic Locations for PSD2-AS1 Gene
chr5:139,741,347-139,746,223
(GRCh38/hg38)
Size:
4,877 bases
Orientation:
Minus strand
chr5:139,120,934-139,125,808
(GRCh37/hg19)

Genomic View for PSD2-AS1 Gene

Genes around PSD2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PSD2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PSD2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PSD2-AS1 Gene

Proteins for PSD2-AS1 Gene

Post-translational modifications for PSD2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PSD2-AS1 Gene

Domains & Families for PSD2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PSD2-AS1 Gene

Function for PSD2-AS1 Gene

Phenotypes From GWAS Catalog for PSD2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PSD2-AS1 Gene

Localization for PSD2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PSD2-AS1 Gene

Pathways & Interactions for PSD2-AS1 Gene

SuperPathways for PSD2-AS1 Gene

No Data Available

Interacting Proteins for PSD2-AS1 Gene

Gene Ontology (GO) - Biological Process for PSD2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PSD2-AS1 Gene

Drugs & Compounds for PSD2-AS1 Gene

No Compound Related Data Available

Transcripts for PSD2-AS1 Gene

mRNA/cDNA for PSD2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PSD2-AS1 Gene

No ASD Table

Relevant External Links for PSD2-AS1 Gene

GeneLoc Exon Structure for
PSD2-AS1
ECgene alternative splicing isoforms for
PSD2-AS1

Expression for PSD2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PSD2-AS1 Gene

Orthologs for PSD2-AS1 Gene

Evolution for PSD2-AS1 Gene

ENSEMBL:
Gene Tree for PSD2-AS1 (if available)
TreeFam:
Gene Tree for PSD2-AS1 (if available)

No data available for Orthologs for PSD2-AS1 Gene

Paralogs for PSD2-AS1 Gene

No data available for Paralogs for PSD2-AS1 Gene

Variants for PSD2-AS1 Gene

Sequence variations from dbSNP and Humsavar for PSD2-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000065598 -- 139,747,639(+) CGCAG(A/C)CCGGC intron-variant, upstream-variant-2KB
rs1000763926 -- 139,747,007(+) CCGGT(C/T)CTTCG intron-variant, upstream-variant-2KB
rs1000832872 -- 139,745,645(+) GATGC(A/G)GTAGT intron-variant
rs1001532987 -- 139,745,262(+) TCACT(A/G)TGAAA intron-variant
rs1001606526 -- 139,744,963(+) GAGCT(A/G)CACTC intron-variant, utr-variant-5-prime

Relevant External Links for PSD2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PSD2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PSD2-AS1 Gene

Disorders for PSD2-AS1 Gene

Relevant External Links for PSD2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PSD2-AS1

No disorders were found for PSD2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PSD2-AS1 Gene

Publications for PSD2-AS1 Gene

No publications were found for PSD2-AS1 Gene.

Products for PSD2-AS1 Gene

Sources for PSD2-AS1 Gene

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