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Aliases for PSD2-AS1 Gene

Subcategory (RNA class) for PSD2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PSD2-AS1 Gene

  • PSD2 Antisense RNA 1 2 3 5
  • CTB-35F21.2 3

External Ids for PSD2-AS1 Gene

Summaries for PSD2-AS1 Gene

GeneCards Summary for PSD2-AS1 Gene

PSD2-AS1 (PSD2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PSD2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PSD2-AS1 Gene

Genomics for PSD2-AS1 Gene

GeneHancer (GH) Regulatory Elements for PSD2-AS1 Gene

Promoters and enhancers for PSD2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I139744 Enhancer 1.5 Ensembl ENCODE dbSUPER 550.8 -0.2 -177 4.7 HDGF PKNOX1 SMAD1 FEZF1 DMAP1 YBX1 ZNF2 YY1 ZNF213 ZNF416 PSD2-AS1 HARS2 ANKHD1 WDR55 IK TMCO6 MALINC1 PSD2 PURA LOC101929719
GH05I139742 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.8 +3.6 3615 1.1 ELF3 PKNOX1 FOXA2 ARID4B DMAP1 ZNF48 ZSCAN9 RARA MIXL1 TGIF2 PSD2 PSD2-AS1 GC05M139726 ENSG00000249526
GH05I139748 Enhancer 0.7 dbSUPER 0.8 -3.0 -2959 0.7 SMAD1 NFIA ZNF189 ZNF449 NFIB ZBTB8A ZNF491 ZIC2 OSR2 LCORL PURA PSD2 PSD2-AS1 PIR36769
GH05I139733 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.4 +12.2 12185 1.8 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 TCF12 SLC30A9 SP5 MXD4 PSD2 IGIP GC05M139726 PSD2-AS1 ENSG00000249526
GH05I139755 Enhancer 1.1 Ensembl dbSUPER 0.4 -9.8 -9793 1.7 HDGF PKNOX1 SIN3A FEZF1 ZNF2 ZNF48 GLIS2 RUNX3 YY2 REST PURA PSD2 HARS2 PIR36769 PSD2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PSD2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PSD2-AS1 Gene

Genomic Locations for PSD2-AS1 Gene
chr5:139,741,347-139,746,223
(GRCh38/hg38)
Size:
4,877 bases
Orientation:
Minus strand
chr5:139,120,934-139,125,808
(GRCh37/hg19)

Genomic View for PSD2-AS1 Gene

Genes around PSD2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PSD2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PSD2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PSD2-AS1 Gene

Proteins for PSD2-AS1 Gene

Post-translational modifications for PSD2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PSD2-AS1 Gene

Domains & Families for PSD2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PSD2-AS1 Gene

Function for PSD2-AS1 Gene

Phenotypes From GWAS Catalog for PSD2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PSD2-AS1 Gene

Localization for PSD2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PSD2-AS1 Gene

Pathways & Interactions for PSD2-AS1 Gene

SuperPathways for PSD2-AS1 Gene

No Data Available

Interacting Proteins for PSD2-AS1 Gene

Gene Ontology (GO) - Biological Process for PSD2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PSD2-AS1 Gene

Drugs & Compounds for PSD2-AS1 Gene

No Compound Related Data Available

Transcripts for PSD2-AS1 Gene

mRNA/cDNA for PSD2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PSD2-AS1 Gene

No ASD Table

Relevant External Links for PSD2-AS1 Gene

GeneLoc Exon Structure for
PSD2-AS1
ECgene alternative splicing isoforms for
PSD2-AS1

Expression for PSD2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PSD2-AS1 Gene

Orthologs for PSD2-AS1 Gene

Evolution for PSD2-AS1 Gene

ENSEMBL:
Gene Tree for PSD2-AS1 (if available)
TreeFam:
Gene Tree for PSD2-AS1 (if available)

No data available for Orthologs for PSD2-AS1 Gene

Paralogs for PSD2-AS1 Gene

No data available for Paralogs for PSD2-AS1 Gene

Variants for PSD2-AS1 Gene

Sequence variations from dbSNP and Humsavar for PSD2-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000065598 -- 139,747,639(-) C/A upstream_transcript_variant
rs1000763926 -- 139,747,007(-) C/T upstream_transcript_variant
rs1000832872 -- 139,745,645(-) G/A intron_variant
rs1001532987 -- 139,745,262(-) G/A intron_variant
rs1001606526 -- 139,744,963(-) G/A intron_variant

Additional Variant Information for PSD2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PSD2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PSD2-AS1 Gene

Disorders for PSD2-AS1 Gene

Additional Disease Information for PSD2-AS1

No disorders were found for PSD2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PSD2-AS1 Gene

Publications for PSD2-AS1 Gene

No publications were found for PSD2-AS1 Gene.

Products for PSD2-AS1 Gene

Sources for PSD2-AS1 Gene

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