PSD2 Gene
protein-coding GIFtS : 50
GCID: GC05 P139155
pleckstrin and Sec7 domain containing 2
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Aliasesfor PSD2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Pleckstrin And Sec7 Domain Containing 2 1 2 PH And SEC7 Domain-Containing Protein 22 Pleckstrin Homology And SEC7 Domain-Containing Protein 22 3 EC 2.5.1.68 DKFZp761B05141 EC 3.6.18 6330404E20Rik2
Export aliases for PSD2 gene to outside databases Previous GC identifers: GC00U916997 GC05P134332
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Summariesfor PSD2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor PSD2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000005.9 NC_018916.1 NT_029289.11 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the PSD2 gene promoter: RP58 p53 MAZR NF-kappaB GATA-2 MZF-1 NF-kappaB2 c-Myb MRF-2 NF-kappaB1 Other transcription factors Search SABiosciences Chromatin IP Primers for PSD2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat PSD2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 5q31.2 Ensembl cytogenetic band: 5q31.2 HGNC cytogenetic band: 5q31.3 PSD2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05P139155: view genomic region
(about GC identifiers )
Start:
139,175,406 bp from pter
End:
139,224,051 bp from pter
Size:
48,646 bases
Orientation:
plus strand
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Proteinsfor PSD2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: PSD2_HUMAN, Q9BQI7 (See
protein sequence )Recommended Name: PH and SEC7 domain-containing protein 2 Size : 771 amino acids; 84660 Da
Subcellular location : Membrane; Single-pass membrane protein (Potential)
Secondary accessions : D3DQD3 Q8N3J8Explore the universe of human proteins at neXtProt for PSD2: NX_Q9BQI7 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9BQI7 2 DME Specific Peptides for PSD2 (Q9BQI7 ) PSD2 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_115665.1 ENSEMBL proteins: ENSP00000274710 Human Recombinant Protein Products for PSD2: Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view) : About this table
PSD2 for ontologies About GeneDecksing PSD2 Antibody Products: Assay Products for PSD2:
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Protein
Domains / Familiesfor PSD2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
PSD2 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9BQI7 ProtoNet protein and cluster: Q9BQI7
2 Blocks protein families : IPB001605 Spectrin pleckstrin homology domain signature IPB001849 Pleckstrin-like UniProtKB/Swiss-Prot: PSD2_HUMAN, Q9BQI7 Similarity : Belongs to the PSD familySimilarity : Contains 1 PH domainSimilarity : Contains 1 SEC7 domain
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Functionfor PSD2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Enzyme Numbers (IUBMB): EC 3.6.1 2 EC 2.5.1.6 2 Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005086 ARF guanyl-nucleotide exchange factor activity
IBA -- GO:0005543 phospholipid binding
IEA --
PSD2 for ontologies About GeneDecksing Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PSD2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PSD2OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: PSD2 (NM_032289 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PSD2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PSD2
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PSD2
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Pathways & Interactionsfor PSD2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Endocytosis
Pathway sources See GeneCards unified pathways Show all pathways 1
Kegg Pathway (Kegg details for PSD2) :
PSD2 for pathways About GeneDecksing Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for PSD2 STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)2 Interacting proteins for PSD2 (Q9BQI7 3 ENSP00000274710 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 3 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0016192 NOT vesicle-mediated transport
IBA -- GO:0030182 neuron differentiation
IBA -- GO:0032012 regulation of ARF protein signal transduction
IEA --
PSD2 for ontologies About GeneDecksing
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Drugs & Compoundsfor PSD2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for PSD2 Search CenterWatch for drugs/clinical trials and news about PSD2
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Transcriptsfor PSD2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
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siRNAs from
OriGene ,
QIAGEN ,
shRNA from
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Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
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SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for PSD2 gene: NM_032289.2 Unigene Cluster for PSD2:
Pleckstrin and Sec7 domain containing 2 Hs.21963 [show with all ESTs ] Unigene Representative Sequence: AL136559 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000274710 (uc003leu.1 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PSD2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PSD2OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: PSD2 (NM_032289 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PSD2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PSD2
Additional cDNA sequence: AL136559.1 AL834268.1 BC038233.1
2 DOTS entries : DT.112778 DT.100666583
24/65 AceView cDNA sequences (see all 65 ):
F02053 BX431556 N62170 BC038233 AL136559 AI866630 AA953847 BE047813 NM_032289 AI858637 F03540 Z42535 AL834268 BE551621 Z39050 AI990006 Z42932 AI632350 N99410 BX477942 AA323272 BE672141 BM671811 CF455015 GeneLoc Exon Structure
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Expression for PSD2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section PSD2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TACTACTGTAAbout this image PSD2 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See PSD2 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for PSD2 SOURCE GeneReport for Unigene cluster: Hs.21963 SABiosciences Custom PCR Arrays for PSD2 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for PSD2Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat PSD2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat PSD2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat PSD2 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PSD2
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Orthologsfor PSD2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for PSD2 gene from 6/21 species (see all 21 ) About this table
ENSEMBL Gene Tree for PSD2 (if available)TreeFam Gene Tree for PSD2 (if available)
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Paralogsfor PSD2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for PSD2 gene PSD3 2 GBF1 2 CYTH3 2 IQSEC3 2 CYTH2 2 ARFGEF2 2 PSD4 2 ARFGEF1 2 IQSEC1 2 PSD 2 IQSEC2 2 CYTH4 2 CYTH1 2 FBXO8 2 3 SIMAP similar genes for PSD2 using alignment to 1 protein entry: PSD2_HUMAN :PSD3 PSD4 PSD
PSD2 for paralogs About GeneDecksing
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Genomic Variantsfor PSD2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 5 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for PSD2 (139175406 - 139224051 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for PSD2: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing PSD2
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Disorders
/ Diseasesfor PSD2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
PSD2 for disorders About GeneDecksing 3 diseases for PSD2 : About MalaCards demyelinating polyneuropathy polyneuropathy neuronitis 1 disease from the University of Copenhagen DISEASES database for PSD2 :Demyelinating polyneuropathy Export disorders for PSD2 gene to outside databases
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Publicationsfor PSD2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for PSD2 gene integrated from 9 sources : (articles sorted by number of sources associating them with PSD2) Utopia : connect your pdf to the dynamic world of online information
Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166) 1 , 2 Wiemann S.... Poustka A. (2001) Characterization of the interactome of the human MutL homologues MLH1, PMS1, and PMS2. (PubMed id 17148452) 1 Cannavo E....Jiricny J. (2007) The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005) 2 Bechtel S.... Schupp I. (2007) The LIFEdb database in 2006. (PubMed id 16381901) 1 Mehrle A....Wiemann S. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) The DNA sequence and comparative analysis of human chromosome 5. (PubMed id 15372022) 2 Schmutz J.... Rubin E.M. (2004) From ORFeome to biology: a functional genomics pipeline. (PubMed id 15489336) 1 Wiemann S....Poustka A. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. (PubMed id 11256614) 1 Simpson J.C.... Wiemann S. (2000) DNA cloning using in vitro site-specific recombination. (PubMed id 11076863) 1 Hartley J.L....Brasch M.A. (2000)
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External Searches for PSD2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing PSD2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing PSD2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing PSD2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for PSD2 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for PSD2 gene: Search GeneIP for patents involving PSD2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor PSD2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for PSD2 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for PSD2 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for PSD2 OriGene Protein Over-expression Lysate for PSD2 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for PSD2 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PSD2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PSD2 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for PSD2 OriGene Custom Protein Services for PSD2 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat PSD2 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing PSD2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat PSD2 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat PSD2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat PSD2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat PSD2
Search Tocris compounds for PSD2
PSD2 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PSD2
ThermoFisher Antibody for PSD2
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PSD2
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Aliases for PSD2
Databases for PSD2
Disorders / Diseases for PSD2
Domains / Families for PSD2
Drugs / Compounds for PSD2
Expression for PSD2
Function for PSD2
Genomic Views for PSD2
Intellectual Property for PSD2
Orthologs for PSD2
Paralogs for PSD2
Pathways / Interactions for PSD2
Products for PSD2
Proteins for PSD2
Publications for PSD2
Search Box for PSD2
Summaries for PSD2
Transcripts for PSD2
Variants for PSD2
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