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Aliases for PRSS53 Gene

Aliases for PRSS53 Gene

  • Protease, Serine 53 2 3 5
  • Polyserine Protease 3 3 4
  • Polyserase 3 2 3
  • Polyserase-3 3 4
  • Protease, Serine, 53 3
  • EC 3.4.21.- 4
  • EDTP308 3
  • UNQ308 3
  • POL3S 3

External Ids for PRSS53 Gene

Previous GeneCards Identifiers for PRSS53 Gene

  • GC16M028656

Summaries for PRSS53 Gene

GeneCards Summary for PRSS53 Gene

PRSS53 (Protease, Serine 53) is a Protein Coding gene. GO annotations related to this gene include serine-type endopeptidase activity. An important paralog of this gene is ST14.

UniProtKB/Swiss-Prot for PRSS53 Gene

  • In vitro can degrade the fibrinogen alpha chain of as well as pro-urokinase-type plasminogen activator.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PRSS53 Gene

Genomics for PRSS53 Gene

Genomic Location for PRSS53 Gene

Chromosome:
16
Start:
31,083,424 bp from pter
End:
31,090,035 bp from pter
Size:
6,612 bases
Orientation:
Minus strand

Genomic View for PRSS53 Gene

Genes around PRSS53 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PRSS53 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRSS53 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRSS53 Gene

No data available for Regulatory Elements for PRSS53 Gene

Proteins for PRSS53 Gene

  • Protein details for PRSS53 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q2L4Q9-PRS53_HUMAN
    Recommended name:
    Serine protease 53
    Protein Accession:
    Q2L4Q9

    Protein attributes for PRSS53 Gene

    Size:
    553 amino acids
    Molecular mass:
    58410 Da
    Quaternary structure:
    No Data Available

neXtProt entry for PRSS53 Gene

Proteomics data for PRSS53 Gene at MOPED

Post-translational modifications for PRSS53 Gene

No Post-translational modifications

Other Protein References for PRSS53 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for PRSS53 Gene

Domains & Families for PRSS53 Gene

Gene Families for PRSS53 Gene

Protein Domains for PRSS53 Gene

Suggested Antigen Peptide Sequences for PRSS53 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q2L4Q9

UniProtKB/Swiss-Prot:

PRS53_HUMAN :
  • Contains 2 peptidase S1 domains.
  • Belongs to the peptidase S1 family.
Domain:
  • Contains 2 peptidase S1 domains.
Family:
  • Belongs to the peptidase S1 family.
genes like me logo Genes that share domains with PRSS53: view

Function for PRSS53 Gene

Molecular function for PRSS53 Gene

UniProtKB/Swiss-Prot Function:
In vitro can degrade the fibrinogen alpha chain of as well as pro-urokinase-type plasminogen activator.

Enzyme Numbers (IUBMB) for PRSS53 Gene

Phenotypes for PRSS53 Gene

GenomeRNAi human phenotypes for PRSS53:
genes like me logo Genes that share phenotypes with PRSS53: view

Animal Model Products

  • Taconic Biosciences Mouse Models for PRSS53

miRNA for PRSS53 Gene

miRTarBase miRNAs that target PRSS53

No data available for Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PRSS53 Gene

Localization for PRSS53 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PRSS53 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PRSS53 Gene COMPARTMENTS Subcellular localization image for PRSS53 gene
Compartment Confidence
extracellular 4
cytosol 1
lysosome 1
vacuole 1

Gene Ontology (GO) - Cellular Components for PRSS53 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IBA --
genes like me logo Genes that share ontologies with PRSS53: view

Pathways & Interactions for PRSS53 Gene

SuperPathways for PRSS53 Gene

No Data Available

Interacting Proteins for PRSS53 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000280606%0d%0a9606.ENSP00000350475%0d%0a
Selected Interacting proteins: ENSP00000280606 for PRSS53 Gene via STRING

Symbol External ID(s) Details
--

Gene Ontology (GO) - Biological Process for PRSS53 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PRSS53 Gene

Drugs & Compounds for PRSS53 Gene

(2) Drugs for PRSS53 Gene - From: PharmGKB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Warfarin Approved Pharma 422
fluindione Pharma 8
genes like me logo Genes that share compounds with PRSS53: view

Transcripts for PRSS53 Gene

mRNA/cDNA for PRSS53 Gene

(6) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for PRSS53 Gene

Protease, serine, 53:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PRSS53 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9
SP1:
SP2:
SP3:

Relevant External Links for PRSS53 Gene

GeneLoc Exon Structure for
PRSS53
ECgene alternative splicing isoforms for
PRSS53

Expression for PRSS53 Gene

mRNA expression in normal human tissues for PRSS53 Gene

Protein differential expression in normal tissues from HIPED for PRSS53 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for PRSS53 Gene



SOURCE GeneReport for Unigene cluster for PRSS53 Gene Hs.569575

mRNA Expression by UniProt/SwissProt for PRSS53 Gene

Q2L4Q9-PRS53_HUMAN
Tissue specificity: Predominantly detected in testis, liver, heart and ovary, as well as in several tumor cell lines.
genes like me logo Genes that share expression patterns with PRSS53: view

Protein tissue co-expression partners for PRSS53 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for PRSS53 Gene

Orthologs for PRSS53 Gene

This gene was present in the common ancestor of chordates.

Orthologs for PRSS53 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia PRSS53 35
  • 85.67 (n)
  • 86.16 (a)
PRSS53 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PRSS53 35
  • 87.4 (n)
  • 86.08 (a)
PRSS53 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Prss53 35
  • 81.46 (n)
  • 81.16 (a)
Prss53 16
Prss53 36
  • 81 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia PRSS53 35
  • 99.28 (n)
  • 99.28 (a)
PRSS53 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Prss53 35
  • 80.45 (n)
  • 79.96 (a)
oppossum
(Monodelphis domestica)
Mammalia PRSS53 36
  • 71 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PRSS53 36
  • 69 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PRSS53 36
  • 38 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii BX571714.1 36
  • 27 (a)
ManyToMany
zgc:92313 36
  • 26 (a)
ManyToMany
Species with no ortholog for PRSS53:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for PRSS53 Gene

ENSEMBL:
Gene Tree for PRSS53 (if available)
TreeFam:
Gene Tree for PRSS53 (if available)

Paralogs for PRSS53 Gene

(18) SIMAP similar genes for PRSS53 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with PRSS53: view

Variants for PRSS53 Gene

Sequence variations from dbSNP and Humsavar for PRSS53 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs2032916 -- 31,085,394(-) agtct(C/T)ttaac intron-variant
rs4468641 -- 31,085,555(+) CCAGG(A/C)TGGGC intron-variant
rs6565218 -- 31,087,261(+) CAAAG(G/T)GCTGG intron-variant
rs4889535 -- 31,086,253(+) TGCAG(C/G)TCTTT intron-variant
rs7199949 -- 31,084,843(+) GTCAG(C/G)ATAGG reference, missense

Structural Variations from Database of Genomic Variants (DGV) for PRSS53 Gene

Variant ID Type Subtype PubMed ID
nsv905729 CNV Loss 21882294
dgv2670n71 CNV Loss 21882294
nsv457483 CNV Loss 19166990
nsv833193 CNV Gain+Loss 17160897
dgv2672n71 CNV Loss 21882294
esv993244 CNV Deletion 20482838

Variation tolerance for PRSS53 Gene

Residual Variation Intolerance Score: 87.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 13.30; 95.33% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PRSS53 Gene

HapMap Linkage Disequilibrium report
PRSS53
Human Gene Mutation Database (HGMD)
PRSS53

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PRSS53 Gene

Disorders for PRSS53 Gene

Relevant External Links for PRSS53

Genetic Association Database (GAD)
PRSS53
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PRSS53

No disorders were found for PRSS53 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PRSS53 Gene

Publications for PRSS53 Gene

  1. Identification and characterization of human polyserase-3, a novel protein with tandem serine-protease domains in the same polypeptide chain. (PMID: 16566820) Cal S. … Lopez-Otin C. (BMC Biochem. 2006) 2 3 4 23 67
  2. Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2. (PMID: 22451204) Pankratz N. … Foroud T. (Ann. Neurol. 2012) 3
  3. Genome-wide association analysis identifies three psoriasis susceptibility loci. (PMID: 20953189) Stuart P.E. … Elder J.T. (Nat. Genet. 2010) 3
  4. Expanding the complexity of the human degradome: polyserases and their tandem serine protease domains. (PMID: 17485402) Cal S. … Lopez-Otin C. (Front. Biosci. 2007) 23
  5. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3

Products for PRSS53 Gene

Sources for PRSS53 Gene

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