PRSS35 Gene
protein-coding GIFtS : 47
GCID: GC06 P084278
protease, serine, 35 (Previous name: chromosome 6 open reading frame 158 ) (Previous symbol: C6orf158 )
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Aliasesfor PRSS35 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Protease, Serine, 35 1 2 Chromosome 6 Open Reading Frame 1581 C6orf1581 2 3 Inactive Serine Protease 352 DJ223E3.11 EC 3.4.218 MGC465201 EC 3.4.21.48
Export aliases for PRSS35 gene to outside databases
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Summariesfor PRSS35 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor PRSS35 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000006.11 NC_018917.1 NT_007299.13 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the PRSS35 gene promoter: TBP Cdc5 Evi-1 AREB6 PPAR-gamma1 POU2F1 FOXJ2 (long isoform) POU2F1a FOXJ2 PPAR-gamma2 Other transcription factors Search SABiosciences Chromatin IP Primers for PRSS35 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PRSS35
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 6q14.2 Ensembl cytogenetic band: 6q14.2 HGNC cytogenetic band: 6q14.2 PRSS35 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06P084278: view genomic region
(about GC identifiers )
Start:
84,222,194 bp from pter
End:
84,235,423 bp from pter
Size:
13,230 bases
Orientation:
plus strand
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Proteinsfor PRSS35 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: PRS35_HUMAN, Q8N3Z0 (See
protein sequence )Recommended Name: Inactive serine protease 35 precursor Size : 413 amino acids; 47098 Da
Subcellular location : Secreted (Potential)
Caution : Although related to peptidase S1 family, lacks the conserved active Ser residue in position 346 which isreplaced by a Thr, suggesting that it has no protease activity
Secondary accessions : A8K7B3 Q9BQP6Explore the universe of human proteins at neXtProt for PRSS35: NX_Q8N3Z0 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q8N3Z0 2 DME Specific Peptides for PRSS35 (Q8N3Z0 ) PRSS35 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_001163894.1 NP_699193.2 ENSEMBL proteins: ENSP00000358714 ENSP00000440870 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
IEA -- GO:0005739 mitochondrion
IEA --
PRSS35 for ontologies About GeneDecksing PRSS35 Antibody Products: Assay Products for PRSS35:
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Protein
Domains / Familiesfor PRSS35 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
PRSS35 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q8N3Z0 ProtoNet protein and cluster: Q8N3Z0
2 Blocks protein families : IPB001254 Serine protease IPB001314 Chymotrypsin serine protease family (S1) signature UniProtKB/Swiss-Prot: PRS35_HUMAN, Q8N3Z0 Similarity : Belongs to the peptidase S1 familySimilarity : Contains 1 peptidase S1 domain
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Functionfor PRSS35 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Enzyme Numbers (IUBMB): EC 3.4.21.4 2 EC 3.4.21 2 Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PRSS35 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PRSS35 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): PRSS35 (NM_153362 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PRSS35 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PRSS35
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PRSS35
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003824 catalytic activity
IEA -- GO:0004252 serine-type endopeptidase activity
-- --
PRSS35 for ontologies About GeneDecksing 2 GenomeRNAi human phenotypes for PRSS35 :Animal Models: 1 MGI phenotypic allele for Prss35 (no phenotypes)
PRSS35 for phenotypes About GeneDecksing
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Pathways & Interactionsfor PRSS35 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for PRSS35 STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)2 Interacting proteins for PRSS35 (ENSP00000358714 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table
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Drugs & Compoundsfor PRSS35 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for PRSS35 Search CenterWatch for drugs/clinical trials and news about PRSS35 / PRS35
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Transcriptsfor PRSS35 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for PRSS35 gene (2 alternative transcripts): NM_001170423.1 NM_153362.2 Unigene Cluster for PRSS35:
Protease, serine, 35 Hs.98381 [show with all ESTs ] Unigene Representative Sequence: NM_001170423 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000369700 ENST00000536636 (uc010kbm.3 uc003pjz.3 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PRSS35 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PRSS35 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): PRSS35 (NM_153362 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PRSS35 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PRSS35
Additional cDNA sequence: AK291928.1 AY358661.1 BC037170.1
3 DOTS entries : DT.310830 DT.95338469
DT.100673865 24/28 AceView cDNA sequences (see all 28 ):
CR615063 AA702780 NM_153362 BC037170 AY358661 AA424028 AI266636 AA423988 AI424866 AI266634 AA424073 BX350107 AA445948 CA414746 BI552165 BI913028 AA483361 AL551286 AI271571 AA452037 BX389627 AA424003 AA453213 AA742931 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for PRSS35 About this scheme ExUns: 1a · 1b ^ 2 ^ 3a · 3b SP1 :           SP2 :     -      
ECgene alternative splicing isoforms for PRSS35
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Expression for PRSS35 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section PRSS35 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image PRSS35 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See PRSS35 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for PRSS35 SOURCE GeneReport for Unigene cluster: Hs.98381 SABiosciences Custom PCR Arrays for PRSS35 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for PRSS35Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat PRSS35 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat PRSS35 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat PRSS35 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PRSS35
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Orthologsfor PRSS35 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for PRSS35 gene from 4/12 species (see all 12 ) About this table
ENSEMBL Gene Tree for PRSS35 (if available)TreeFam Gene Tree for PRSS35 (if available)
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Paralogsfor PRSS35 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for PRSS35 gene PRSS23 2 1 SIMAP similar gene for PRSS35 using alignment to 1 protein entry: PRS35_HUMAN :PRSS23
PRSS35 for paralogs About GeneDecksing
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Genomic Variantsfor PRSS35 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 6 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for PRSS35 (84222194 - 84235423 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for PRSS35: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing PRSS35
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Disorders
/ Diseasesfor PRSS35 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section PRSS35 for disorders About MalaCards
PRSS35 for disorders About GeneDecksing Human Genome Epidemiology (HuGE) Navigator: PRSS35 (2 documents) Export disorders for PRSS35 gene to outside databases
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Publicationsfor PRSS35 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for PRSS35 gene integrated from 9 sources : (articles sorted by number of sources associating them with PRSS35) Utopia : connect your pdf to the dynamic world of online information
The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 Clark H.F.... Gray A.M. (2003) The identification of novel ovarian proteases through the use of genomic and bioinformatic methodologies. (PubMed id 16870946) 1 , 9 Miyakoshi K....Hennebold J.D. (2006) Genetic variants in nuclear-encoded mitochondrial gen es influence AIDS progression. (PubMed id 20877624) 1 Hendrickson S.L....O'Brien S.J. (2010) Novel cleft susceptibility genes in chromosome 6q. (PubMed id 20511563) 1 Letra A....Vieira A.R. (2010) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 2 Ota T.... Sugano S. (2004) The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404) 2 Mungall A.J.... Beck S. (2003) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) A simple fold with variations: the pacifastin inhibit or family. (PubMed id 14990440) 9 GA!spA!ri Z....Perczel A. (2004)
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External Searches for PRSS35 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing PRSS35 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing PRSS35 gene
(According to HUGE )
About This Section --
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Specialized Databases showing PRSS35 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for PRSS35 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for PRSS35 gene: Search GeneIP for patents involving PRSS35 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor PRSS35 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for PRSS35 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for PRSS35 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for PRSS35 OriGene Protein Over-expression Lysate for PRSS35 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for PRSS35 OriGene 3'-UTR Clone for PRSS35 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PRSS35 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PRSS35 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for PRSS35 OriGene Custom Protein Services for PRSS35 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat PRSS35 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing PRSS35 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PRSS35 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat PRSS35 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat PRSS35 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat PRSS35
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PRSS35 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PRSS35
ThermoFisher Antibody for PRSS35
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PRSS35
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