Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PRR29 Gene

Aliases for PRR29 Gene

  • Proline Rich 29 2 3
  • C17orf72 3 4
  • Chromosome 17 Open Reading Frame 72 2
  • Proline-Rich Protein 29 3

External Ids for PRR29 Gene

Previous HGNC Symbols for PRR29 Gene

  • C17orf72

Summaries for PRR29 Gene

GeneCards Summary for PRR29 Gene

PRR29 (Proline Rich 29) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PRR29 Gene

Genomics for PRR29 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for PRR29 Gene

Start:
63,998,351 bp from pter
End:
64,004,304 bp from pter
Size:
5,954 bases
Orientation:
Plus strand

Genomic View for PRR29 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PRR29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRR29 Gene

No data available for Regulatory Elements for PRR29 Gene

Proteins for PRR29 Gene

  • Protein details for PRR29 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C7W0-PRR29_HUMAN
    Recommended name:
    Proline-rich protein 29
    Protein Accession:
    P0C7W0
    Secondary Accessions:
    • B3KMP0
    • B4DZJ9
    • B4E2F8
    • E9PGL5
    • J3QKX4

    Protein attributes for PRR29 Gene

    Size:
    189 amino acids
    Molecular mass:
    20715 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for PRR29 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PRR29 Gene

Proteomics data for PRR29 Gene at MOPED

Post-translational modifications for PRR29 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PRR29 Gene

Domains for PRR29 Gene

Protein Domains for PRR29 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PRR29: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PRR29 Gene

Function for PRR29 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for PRR29 Gene

Localization for PRR29 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PRR29 Gene

Pathways for PRR29 Gene

SuperPathways for PRR29 Gene

No Data Available

Interacting Proteins for PRR29 Gene

Gene Ontology (GO) - Biological Process for PRR29 Gene

None

No data available for Pathways by source for PRR29 Gene

Transcripts for PRR29 Gene

mRNA/cDNA for PRR29 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PRR29

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for PRR29
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PRR29 Gene

No ASD Table

Relevant External Links for PRR29 Gene

GeneLoc Exon Structure for
PRR29
ECgene alternative splicing isoforms for
PRR29

Expression for PRR29 Gene

mRNA expression in normal human tissues for PRR29 Gene

genes like me logo Genes that share expressions with PRR29: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for PRR29 Gene

Orthologs for PRR29 Gene

This gene was present in the common ancestor of chordates.

Orthologs for PRR29 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf72 35
  • 99.47 (n)
  • 99.47 (a)
C17orf72 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C19H17orf72 35
  • 75.69 (n)
  • 65.75 (a)
dog
(Canis familiaris)
Mammalia C17orf72 36
  • 60 (a)
OneToOne
C9H17orf72 35
  • 81.24 (n)
  • 72.13 (a)
mouse
(Mus musculus)
Mammalia 2310007L24Rik 35
  • 74.23 (n)
  • 64.32 (a)
2310007L24Rik 36
  • 51 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C17orf72 36
  • 39 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1307288 35
  • 72.79 (n)
  • 64.32 (a)
lizard
(Anolis carolinensis)
Reptilia C17orf72 36
  • 30 (a)
OneToOne
Species with no ortholog for PRR29:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for PRR29 Gene

ENSEMBL:
Gene Tree for PRR29 (if available)
TreeFam:
Gene Tree for PRR29 (if available)

Paralogs for PRR29 Gene

No data available for Paralogs for PRR29 Gene

Variants for PRR29 Gene

Sequence variations from dbSNP and Humsavar for PRR29 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs9894128 -- 64,002,041(+) CTTCC(C/T)GCCTG utr-variant-3-prime, downstream-variant-500B
rs11079520 -- 64,001,974(+) TGTGT(A/G)AGAGC utr-variant-3-prime, reference, synonymous-codon, downstream-variant-500B
rs12939821 -- 64,001,926(+) TCCCT(A/G)CCCCA utr-variant-3-prime, missense, reference, downstream-variant-500B
rs115101896 -- 64,001,972(+) GTTGT(A/G)TAAGA utr-variant-3-prime, synonymous-codon, reference, downstream-variant-500B
rs181315683 -- 64,001,956(+) GGGCC(A/G)GATCT utr-variant-3-prime, missense, reference, downstream-variant-500B

Relevant External Links for PRR29 Gene

HapMap Linkage Disequilibrium report
PRR29

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for PRR29 Gene

Disorders for PRR29 Gene

No disorders were found for PRR29 Gene.

No data available for UniProtKB/Swiss-Prot for PRR29 Gene

Publications for PRR29 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 4

Products for PRR29 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate PRR29
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for PRR29
    • Block miRNA regulation of PRR29 using miScript Target Protectors

    Sources for PRR29 Gene

    Back to Top

    Content