PRR20C Gene
protein-coding GIFtS: 28
GCID: GC13P057728
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proline rich 20C
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Aliases
for PRR20C gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Proline Rich 20C1 2 | | FLJ40296 Protein Family Member2 | | Proline-Rich Protein 20C2 |
Export aliases for PRR20C gene to outside databasesPrevious GC identifers: GC13P056627 GC13P057717 |
Summaries
for PRR20C gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for PRR20C:
This gene is one of five identical loci in a cluster on chromosome 13q21.1. The predicted protein is proline-rich andcontains several dopamine D4 receptor signatures and PRINTS domains. (provided by RefSeq, Oct 2008)
|
Genomic Views
for PRR20C gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for PRR20C
Other transcription factors
Search SABiosciences Chromatin IP Primers for PRR20C
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PRR20C |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 13q21.1 Ensembl cytogenetic band: 13q21.1 HGNC cytogenetic band: 13q21.1PRR20C Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 13 GeneLoc Exon Structure GeneLoc location for GC13P057728: view genomic region
(about GC identifiers)
Start:
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57,728,195 bp from pter |
End:
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57,731,216 bp from pter |
Size:
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3,022 bases |
Orientation:
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plus strand |
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Proteins
for PRR20C gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: PR20C_HUMAN, P86479 (See
protein sequence)Recommended Name: Proline-rich protein 20C Size: 221 amino acids; 23262 Da
Secondary accessions: Q8N7V5Explore the universe of human proteins at neXtProt for PRR20C: NX_P86479
PRR20C Protein expression data from MOPED and PaxDb: --
REFSEQ proteins: NP_001123877.1
ENSEMBL proteins: ENSP00000438757
Human Recombinant Protein Products for PRR20C:
PRR20C Antibody Products:
Assay Products for PRR20C: |
Protein
Domains /
Families
for PRR20C gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: P86479 |
Function
for PRR20C gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Animal Models:
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for PRR20C
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for PRR20C
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: PRR20C (NM_001130405) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PRR20C | |  | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat PRR20C |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PRR20C |
|
Pathways & Interactions
for PRR20C gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for PRR20C
|
Drugs & Compounds
for PRR20C gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for PRR20C
Search CenterWatch for drugs/clinical trials and news about PRR20C / PR20C
|
Transcripts
for PRR20C gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for PRR20C gene: NM_001130405.1 1 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000544357(uc010thf.1)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for PRR20C
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for PRR20C
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: PRR20C (NM_001130405) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PRR20C | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat PRR20C |
GeneLoc Exon Structure
|
Expression
for PRR20C gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| PRR20C expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
Genevestigator expression for PRR20C
SABiosciences Custom PCR Arrays for PRR20C
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for PRR20C
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat PRR20C | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat PRR20C | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat PRR20C | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PRR20C |
Orthologs
for PRR20C gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
--
ENSEMBL Gene Tree for PRR20C (if available)
TreeFam Gene Tree for PRR20C (if available) |
Paralogs
for PRR20C gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for PRR20C gene
- PRR20B1 2 PRR20E1 2 PRR20D1 2 PRR20A1 2
4 SIMAP similar genes for PRR20C using alignment to 1 protein entry: PR20C_HUMAN:PRR20A PRR20B PRR20D PRR20E
PRR20C for paralogs About GeneDecksing
|
Genomic Variants
for PRR20C gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 13 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for PRR20C (57728195 - 57731216 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 17 variations for PRR20C
15/17 CNVs (see all 17): 35175 76365 3015 31929 86850 76360 86849 35176 71722 3909 4805 39134 0169 33974 33977 | SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for PRR20C gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
PRR20C for disorders About GeneDecksing
2  diseases for PRR20C: About MalaCardsfacioscapulohumeral muscular dystrophy muscular dystrophy
1 disease from the University of Copenhagen DISEASES database for PRR20C:Facioscapulohumeral muscular dystrophy Export disorders for PRR20C gene to outside databases
|
Publications
for PRR20C gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed article for PRR20C gene integrated from 9 sources:
(articles sorted by number of sources associating them with PRR20C) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The DNA sequence and analysis of human chromosome 13. (PubMed id 15057823)1, 2 Dunham A.... Ross M.T. (2004)
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External Searches for PRR20C gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
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Genome Databases showing PRR20C gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing PRR20C gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing PRR20C gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for PRR20C | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for PRR20C gene:
Search GeneIP for patents involving PRR20C
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for PRR20C gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 | |
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| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for PRR20C | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for PRR20C | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for PRR20C | | | Browse OriGene Protein Over-expression Lysates | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for PRR20C | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for PRR20C | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for PRR20C | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for PRR20C | | OriGene Custom Protein Services for PRR20C | | | OriGene Custom Immunoassay Development | | |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat PRR20C | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing PRR20C | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PRR20C | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat PRR20C | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat PRR20C | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat PRR20C |
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 |  |  |  | |
| | | | Search Tocris compounds for PRR20C |
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 | | | PRR20C Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PRR20C |
|  |  |  |  | | | | Search ThermoFisher Antibodies for PRR20C |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat PRR20C |
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