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PRR12 Gene

protein-coding   GIFtS: 39
GCID: GC19P050094

Proline Rich 12

(Previous name: KIAA1205)
(Previous symbol: KIAA1205)
  Search for PRR12
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Proline Rich 121 2
KIAA12051 2 3
Proline-Rich Protein 122

External Ids:    HGNC: 292171   Entrez Gene: 574792   Ensembl: ENSG000001264647   UniProtKB: Q9ULL53   

Export aliases for PRR12 gene to outside databases

Previous GC identifers: GC19P054787 GC19P054788 GC19P046472


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for PRR12 Gene:
PRR12 (proline rich 12) is a protein-coding gene. An important paralog of this gene is QSER1.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000019.10  NC_018930.2  NT_011109.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the PRR12 gene promoter:
         p53   STAT5A   RelA   NF-kappaB   Egr-4   Egr-2   HOXA5   c-Myb   Zic3   NF-kappaB1   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for PRR12

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat PRR12


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.33   Ensembl cytogenetic band:  19q13.33   HGNC cytogenetic band: 19q13.33

PRR12 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
PRR12 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P050094:  view genomic region     (about GC identifiers)

Start:
50,094,900 bp from pter      End:
50,129,696 bp from pter
Size:
34,797 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: PRR12_HUMAN, Q9ULL5 (See protein sequence)
Recommended Name: Proline-rich protein 12  
Size: 1215 amino acids; 129991 Da
Sequence caution: Sequence=BAA86519.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Secondary accessions: E9PB06 Q8N4J6
Alternative splicing: 3 isoforms:  Q9ULL5-1   Q9ULL5-2   Q9ULL5-3   (No experimental confirmation available. Prediction based on ortholog sequences. Ref.3 (BF805116) sequence differs from that shown due to a frameshift in position 10. Contains a phosphoserine at position 651. Contains a phosphothreonine at position 738)

Explore the universe of human proteins at neXtProt for PRR12: NX_Q9ULL5

Explore proteomics data for PRR12 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See PRR12 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_065770.1  
    ENSEMBL proteins: 
     ENSP00000394510  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    2 InterPro protein domains:
     IPR017956 AT_hook_DNA-bd_motif
     IPR025451 DUF4211

    Graphical View of Domain Structure for InterPro Entry Q9ULL5

    ProtoNet protein and cluster: Q9ULL5

    UniProtKB/Swiss-Prot: PRR12_HUMAN, Q9ULL5
    Similarity: Contains 2 A.T hook DNA-binding domains


    PRR12 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
         
    PRR12 for ontologies           About GeneDecksing


    Animal Models:
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    hsa-mir-16-5p (MIRT051075), hsa-mir-744-5p (MIRT037713), hsa-mir-320a (MIRT044430), hsa-mir-92a-3p (MIRT049155), hsa-mir-615-3p (MIRT039614), hsa-mir-34a-5p (MIRT047382)

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    Selected qRT-PCR Assays for microRNAs that regulate PRR12 (see all 37):
    hsa-miR-3685 hsa-miR-323-3p hsa-miR-300 hsa-miR-128 hsa-miR-765 hsa-let-7a-2* hsa-miR-624 hsa-miR-486-3p
    Browse SwitchGear 3'UTR luciferase reporter plasmids
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    Predesigned siRNA for gene silencing in human, mouse, rat PRR12

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3
    cytosol2

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for PRR12
    Interactions:

        Search GeneGlobe Interaction Network for PRR12

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    3 Interacting proteins for PRR12 (ENSP000003945104) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    FASNENSP000003045924STRING: ENSP00000304592
    PUM1ENSP000003917234STRING: ENSP00000391723
    UBCENSP000003448184STRING: ENSP00000344818
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for PRR12



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for PRR12 gene: 
    NM_020719.1  

    Unigene Cluster for PRR12:

    Proline rich 12
    Hs.590971  [show with all ESTs]
    Unigene Representative Sequence: NM_020719
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000418929(uc002poo.4) ENST00000593853
    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate PRR12 (see all 37):
    hsa-miR-3685 hsa-miR-323-3p hsa-miR-300 hsa-miR-128 hsa-miR-765 hsa-let-7a-2* hsa-miR-624 hsa-miR-486-3p
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat PRR12
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    Primer
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    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat PRR12
      QuantiTect SYBR Green Assays in human, mouse, rat PRR12
      QuantiFast Probe-based Assays in human, mouse, rat PRR12

    Additional mRNA sequence: 

    AB033031.1 BC034003.1 

    6 DOTS entries:

    DT.453962  DT.92470742  DT.97858979  DT.121408963  DT.97815244  DT.92067109 

    3 AceView cDNA sequences:

    CR593436 BC034003 AB033031 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    PRR12 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GGTCAGGGTG
    PRR12 Expression
    About this image

    PRR12 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    PRR12 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.590971
        Custom PCR Arrays for PRR12
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PRR12

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for PRR12 gene from Selected species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Prr121 , 5 proline rich 121, 5 85.43(n)1
    95.24(a)1
      7 (29.08 cM)5
    2332101  NM_175022.21  NP_778187.21 
     450277075 
    lizard
    (Anolis carolinensis)
    Reptilia PRR126
    proline rich 12
    49(a)
    1 ↔ 1
    6(80526222-80553001)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia 1377132142   -- 75.91(n)    137713214 
    zebrafish
    (Danio rerio)
    Actinopterygii wufj88e102 Transcribed sequence with weak similarity to protein more 77.92(n)    BI888447.1 


    ENSEMBL Gene Tree for PRR12 (if available)
    TreeFam Gene Tree for PRR12 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for PRR12 gene
    QSER12  

    PRR12 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for PRR12
    PGOHUM00000247663


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for PRR12 (see all 922)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1464154051,2
    C--50095048(+) GCCCA-/GCCGG 
            
    GCCGG
    1 -- int10--------
    rs1912134721,2
    --50095051(+) CAGCCA/GGGCCG 1 -- int10--------
    rs2009187081,2
    --50095072(+) GGCCG-/GGCCC 
            
    GCCCG
    1 -- int10--------
    rs1819282931,2
    --50095191(+) GCCAGC/TTCCGG 1 -- int10--------
    rs1466020011,2
    C--50095370(+) AAGGTG/TGGAAG 1 -- int10--------
    rs343195721,2
    C--50095528(+) GGGTT-/GT/TG 
            
    GTGTG
    1 -- int10--------
    rs1874316571,2
    --50095576(+) CCTTTA/GATGCC 1 -- int10--------
    rs1425626121,2
    --50095663(+) GGTGCC/TGTTGC 1 -- int10--------
    rs1176139971,2
    C,F--50095702(+) TGTGTT/GTGTGT 1 -- int11Minor allele frequency- G:0.03NA 120
    rs1905057001,2
    --50095711(+) GTGTCC/TGAGCG 1 -- int10--------

    HapMap Linkage Disequilibrium report for PRR12 (50094900 - 50129696 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for PRR12 (see all 12):    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv912269CNV Loss21882294
    nsv912266CNV Loss21882294
    dgv3972n71CNV Loss21882294
    nsv833863CNV Loss17160897
    nsv828578CNV Loss20364138
    nsv470150CNV Gain18288195
    nsv833864CNV Gain17160897
    nsv817854CNV Gain17921354
    esv21818CNV Gain19812545
    nsv9739CNV Gain+Loss18304495

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing PRR12
    DNA2.0 Custom Variant and Variant Library Synthesis for PRR12

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for PRR12 gene, integrated from 10 sources (see all 18):
    (articles sorted by number of sources associating them with PRR12)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Prediction of the coding sequences of unidentified human genes. XV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10574462)1, 2, 3 Nagase T.... Ohara O. (DNA Res. 1999)
    2. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (Cell 2006)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PubMed id 10737800)1, 2 Dias Neto E....Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000)
    5. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (Cell 2012)
    6. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (amp 2012)
    7. Toward an understanding of the protein interaction network of the human liver. (PubMed id 21988832)1 Wang J....Yang X. (Mol. Syst. Biol. 2011)
    8. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (Mol. Cell 2011)
    9. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (Sci. Signal. 2011)
    10. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (Sci. Signal. 2010)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 57479 HGNC: 29217 AceView: KIAA1205 Ensembl:ENSG00000126464 euGenes: HUgn57479
    ECgene: PRR12 H-InvDB: PRR12

    (According to HUGE)
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    HUGE: KIAA1205

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for PRR12 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for PRR12 gene:
    Search GeneIP for patents involving PRR12

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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