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Aliases for PRPS1L1 Gene

Aliases for PRPS1L1 Gene

  • Phosphoribosyl Pyrophosphate Synthetase 1-Like 1 2 3
  • PRPS3 3 4 6
  • Phosphoribosyl Pyrophosphate Synthase 1-Like 1 3 4
  • Phosphoribosyl Pyrophosphate Synthase III 3 4
  • PRPS1-Like 1 3 4
  • EC 2.7.6.1 4 63
  • PRS-III 3 4
  • PRPSL 3 4
  • Ribose-Phosphate Diphosphokinase Catalytic Chain III 3
  • Phosphoribosylpyrophosphate Synthetase Subunit III 3
  • Ribose-Phosphate Pyrophosphokinase III 3
  • Ribose-Phosphate Pyrophosphokinase 3 3
  • PRPS1 3

External Ids for PRPS1L1 Gene

Previous HGNC Symbols for PRPS1L1 Gene

  • PRPSL

Previous GeneCards Identifiers for PRPS1L1 Gene

  • GC07U990077
  • GC07M017810
  • GC07M017839
  • GC07M018032

Summaries for PRPS1L1 Gene

Entrez Gene Summary for PRPS1L1 Gene

  • This intronless gene is specifically expressed in the testis, and encodes a protein that is highly homologous to the two subunits of phosphoribosylpyrophosphate synthetase encoded by human X-linked genes, PRPS1 and PRPS2. These enzymes convert pyrimidine, purine or pyridine bases to the corresponding ribonucleoside monophosphates. In vitro transcription/translation and site-directed mutagenesis studies indicate that translation of this mRNA initiates exclusively at a non-AUG (ACG) codon. [provided by RefSeq, Jul 2008]

GeneCards Summary for PRPS1L1 Gene

PRPS1L1 (Phosphoribosyl Pyrophosphate Synthetase 1-Like 1) is a Protein Coding gene. Among its related pathways are Apoptotic Pathways in Synovial Fibroblasts and Apoptotic Pathways in Synovial Fibroblasts. GO annotations related to this gene include protein homodimerization activity and kinase activity. An important paralog of this gene is PRPSAP1.

UniProtKB/Swiss-Prot for PRPS1L1 Gene

  • Catalyzes the synthesis of phosphoribosylpyrophosphate (PRPP) that is essential for nucleotide synthesis

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PRPS1L1 Gene

Genomics for PRPS1L1 Gene

Regulatory Elements for PRPS1L1 Gene

Genomic Location for PRPS1L1 Gene

Start:
18,026,774 bp from pter
End:
18,027,863 bp from pter
Size:
1,090 bases
Orientation:
Minus strand

Genomic View for PRPS1L1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PRPS1L1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRPS1L1 Gene

Proteins for PRPS1L1 Gene

  • Protein details for PRPS1L1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P21108-PRPS3_HUMAN
    Recommended name:
    Ribose-phosphate pyrophosphokinase 3
    Protein Accession:
    P21108
    Secondary Accessions:
    • Q6P5P6

    Protein attributes for PRPS1L1 Gene

    Size:
    318 amino acids
    Molecular mass:
    34839 Da
    Cofactor:
    Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
    Quaternary structure:
    • Homodimer. The active form is probably a hexamer composed of 3 homodimers (By similarity).

neXtProt entry for PRPS1L1 Gene

Proteomics data for PRPS1L1 Gene at MOPED

Post-translational modifications for PRPS1L1 Gene

  • Ubiquitination at Lys5, Lys18, Lys29, and Lys194
  • Modification sites at PhosphoSitePlus

Other Protein References for PRPS1L1 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

Antibody Products

Domains for PRPS1L1 Gene

Protein Domains for PRPS1L1 Gene

Suggested Antigen Peptide Sequences for PRPS1L1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P21108

UniProtKB/Swiss-Prot:

PRPS3_HUMAN :
  • P21108
Family:
  • Belongs to the ribose-phosphate pyrophosphokinase family.
genes like me logo Genes that share domains with PRPS1L1: view

No data available for Gene Families for PRPS1L1 Gene

Function for PRPS1L1 Gene

Molecular function for PRPS1L1 Gene

GENATLAS Biochemistry: phosphoribosyl pyrophosphate synthetase 1-like 1
UniProtKB/Swiss-Prot CatalyticActivity: ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate
UniProtKB/Swiss-Prot EnzymeRegulation: Activated by magnesium and inorganic phosphate
UniProtKB/Swiss-Prot Function: Catalyzes the synthesis of phosphoribosylpyrophosphate (PRPP) that is essential for nucleotide synthesis

Enzyme Numbers (IUBMB) for PRPS1L1 Gene

Gene Ontology (GO) - Molecular Function for PRPS1L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000287 magnesium ion binding IEA --
GO:0004749 ribose phosphate diphosphokinase activity NAS 2168892
GO:0005524 ATP binding ISS --
GO:0016301 kinase activity IEA --
GO:0042803 protein homodimerization activity ISS --
genes like me logo Genes that share ontologies with PRPS1L1: view

Phenotypes for PRPS1L1 Gene

genes like me logo Genes that share phenotypes with PRPS1L1: view

Animal Model Products

CRISPR Products

miRNA for PRPS1L1 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PRPS1L1

In Situ Assay Products

Flow Cytometry Products

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for PRPS1L1 Gene

Localization for PRPS1L1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PRPS1L1 Gene COMPARTMENTS Subcellular localization image for PRPS1L1 gene
Compartment Confidence
cytosol 3

Gene Ontology (GO) - Cellular Components for PRPS1L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with PRPS1L1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for PRPS1L1 Gene

Pathways for PRPS1L1 Gene

genes like me logo Genes that share pathways with PRPS1L1: view

Pathways by source for PRPS1L1 Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

UniProtKB/Swiss-Prot P21108-PRPS3_HUMAN

  • Pathway: Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route I): step 1/1

Gene Ontology (GO) - Biological Process for PRPS1L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process IEA --
GO:0008584 male gonad development --
GO:0009116 nucleoside metabolic process --
GO:0009156 ribonucleoside monophosphate biosynthetic process IEA --
GO:0009165 nucleotide biosynthetic process IEA --
genes like me logo Genes that share ontologies with PRPS1L1: view

Compounds for PRPS1L1 Gene

(6) HMDB Compounds for PRPS1L1 Gene

Compound Synonyms Cas Number PubMed IDs
Adenosine monophosphate
  • 5'-AMP
61-19-8
Adenosine triphosphate
  • 5'-(tetrahydrogen triphosphate) Adenosine
56-65-5
D-Ribose 5-phosphate
  • D-Ribose 5-phosphate
3615-55-2
D-Ribulose 5-phosphate
  • D-Ribulose 5-phosphate
4151-19-3
Magnesium
  • Magnesium
7439-95-4

(1) Novoseek inferred chemical compound relationships for PRPS1L1 Gene

Compound -log(P) Hits PubMed IDs
prpp 92.2 6
genes like me logo Genes that share compounds with PRPS1L1: view

Transcripts for PRPS1L1 Gene

mRNA/cDNA for PRPS1L1 Gene

(10) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for PRPS1L1 Gene

Phosphoribosyl pyrophosphate synthetase 1-like 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PRPS1L1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PRPS1L1 Gene

No ASD Table

Relevant External Links for PRPS1L1 Gene

GeneLoc Exon Structure for
PRPS1L1
ECgene alternative splicing isoforms for
PRPS1L1

Expression for PRPS1L1 Gene

mRNA expression in normal human tissues for PRPS1L1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PRPS1L1 Gene

This gene is overexpressed in Testis (52.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for PRPS1L1 Gene

SOURCE GeneReport for Unigene cluster for PRPS1L1 Gene Hs.169284

mRNA Expression by UniProt/SwissProt for PRPS1L1 Gene

P21108-PRPS3_HUMAN
Tissue specificity: Testis
genes like me logo Genes that share expressions with PRPS1L1: view

In Situ Assay Products

Orthologs for PRPS1L1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for PRPS1L1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PRPS1L1 35
  • 98.64 (n)
  • 96.86 (a)
cow
(Bos Taurus)
Mammalia PRPS1L1 35
  • 88.22 (n)
  • 86.12 (a)
PRPS1L1 36
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PRPS1L1 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Prps1l1 35
  • 87.42 (n)
  • 91.51 (a)
Prps1l1 16
Prps1l1 36
  • 92 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 91 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 83 (a)
ManyToMany
rat
(Rattus norvegicus)
Mammalia Prps1l1 35
  • 86.37 (n)
  • 91.51 (a)
chicken
(Gallus gallus)
Aves -- 36
  • 91 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 81 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii prps1a 36
  • 91 (a)
ManyToMany
prps1b 36
  • 93 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CG6767 36
  • 70 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea R151.2 36
  • 57 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PRS2 36
  • 60 (a)
ManyToMany
PRS3 36
  • 58 (a)
ManyToMany
PRS4 36
  • 60 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2559 36
  • 84 (a)
OneToMany
Species with no ortholog for PRPS1L1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for PRPS1L1 Gene

ENSEMBL:
Gene Tree for PRPS1L1 (if available)
TreeFam:
Gene Tree for PRPS1L1 (if available)

Paralogs for PRPS1L1 Gene

Paralogs for PRPS1L1 Gene

Selected SIMAP similar genes for PRPS1L1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with PRPS1L1: view

Variants for PRPS1L1 Gene

Sequence variations from dbSNP and Humsavar for PRPS1L1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs1126434 -- 18,027,681(-) AAGAA(A/G)TTCAG reference, synonymous-codon
rs1126437 -- 18,027,651(-) GAAAT(C/T)GGTGA synonymous-codon, reference
rs3800961 -- 18,027,459(-) ATCTC(C/T)GCCAA synonymous-codon, reference
rs3800962 - 18,026,946(-) GATGA(G/T)AAGAT reference, missense
rs6461371 -- 18,029,184(+) TGTAA(A/G)ATAAC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for PRPS1L1 Gene

Variant ID Type Subtype PubMed ID
nsv887808 CNV Gain 21882294

Relevant External Links for PRPS1L1 Gene

HapMap Linkage Disequilibrium report
PRPS1L1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PRPS1L1 Gene

Disorders for PRPS1L1 Gene

(2) University of Copenhagen DISEASES for PRPS1L1 Gene

Relevant External Links for PRPS1L1

Genetic Association Database (GAD)
PRPS1L1
genes like me logo Genes that share disorders with PRPS1L1: view

No data available for UniProtKB/Swiss-Prot for PRPS1L1 Gene

Publications for PRPS1L1 Gene

  1. A human testis-specific mRNA for phosphoribosylpyrophosphate synthetase that initiates from a non-AUG codon. (PMID: 2168892) Taira M. … Tatibana M. (J. Biol. Chem. 1990) 2 3 4 23
  2. Promoter regions of the human X-linked housekeeping genes PRPS1 and PRPS2 encoding phosphoribosylpyrophosphate synthetase subunit I and II isoforms. (PMID: 1314091) Ishizuka T. … Tatibana M. (Biochim. Biophys. Acta 1992) 3 23
  3. Cloning of cDNAs for human phosphoribosylpyrophosphate synthetases 1 and 2 and X chromosome localization of PRPS1 and PRPS2 genes. (PMID: 1962753) Becker M.A. … Roessler B.J. (Genomics 1990) 23
  4. Mutations in PRPS1, which encodes the phosphoribosyl pyrophosphate synthetase enzyme critical for nucleotide biosynthesis, cause hereditary peripheral neuropathy with hearing loss and optic neuropathy (cmtx5). (PMID: 17701900) Kim H.-J. … Kim J.-W. (Am. J. Hum. Genet. 2007) 23
  5. Loss-of-function mutations in the PRPS1 gene cause a type of nonsyndromic X-linked sensorineural deafness, DFN2. (PMID: 20021999) Liu X. … Yuan H. (Am. J. Hum. Genet. 2010) 23

Products for PRPS1L1 Gene

  • Pathway & Disease-focused RT² Profiler PCR Arrays
  • QIAGEN qRT-PCR Assays for microRNAs that regulate PRPS1L1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for PRPS1L1
    • Block miRNA regulation of PRPS1L1 using miScript Target Protectors
    • antibodies-online proteins for PRPS1L1
    • antibodies-online antibodies for PRPS1L1
    • antibodies-online kits for PRPS1L1

    Sources for PRPS1L1 Gene

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