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Aliases for PRKRIP1 Gene

Aliases for PRKRIP1 Gene

  • PRKR Interacting Protein 1 (IL11 Inducible) 2 3
  • Likely Ortholog Of Mouse C114 DsRNA-Binding Protein 2 3
  • KRAB Box Domain Containing 3 2 3
  • PRKR-Interacting Protein 1 3
  • KRBOX3 3
  • C114 3

External Ids for PRKRIP1 Gene

Summaries for PRKRIP1 Gene

GeneCards Summary for PRKRIP1 Gene

PRKRIP1 (PRKR Interacting Protein 1 (IL11 Inducible)) is a Protein Coding gene. GO annotations related to this gene include protein kinase binding and protein kinase inhibitor activity.

UniProtKB/Swiss-Prot for PRKRIP1 Gene

  • Binds double-stranded RNA. Inhibits EIF2AK2 kinase activity (By similarity).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PRKRIP1 Gene

Genomics for PRKRIP1 Gene

Genomic Location for PRKRIP1 Gene

Start:
102,363,872 bp from pter
End:
102,426,682 bp from pter
Size:
62,811 bases
Orientation:
Plus strand

Genomic View for PRKRIP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PRKRIP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRKRIP1 Gene

Regulatory Elements for PRKRIP1 Gene

Proteins for PRKRIP1 Gene

  • Protein details for PRKRIP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H875-PKRI1_HUMAN
    Recommended name:
    PRKR-interacting protein 1
    Protein Accession:
    Q9H875
    Secondary Accessions:
    • B4DGM2
    • Q8NDM6
    • Q96CF8

    Protein attributes for PRKRIP1 Gene

    Size:
    184 amino acids
    Molecular mass:
    20997 Da
    Quaternary structure:
    • Interacts with EIF2AK2.

    Alternative splice isoforms for PRKRIP1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PRKRIP1 Gene

Proteomics data for PRKRIP1 Gene at MOPED

Post-translational modifications for PRKRIP1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for PRKRIP1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for PRKRIP1 Gene

Domains for PRKRIP1 Gene

Gene Families for PRKRIP1 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for PRKRIP1 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

PKRI1_HUMAN
Family:
  • Belongs to the PRKRIP1 family.:
    • Q9H875
genes like me logo Genes that share domains with PRKRIP1: view

Function for PRKRIP1 Gene

Molecular function for PRKRIP1 Gene

UniProtKB/Swiss-Prot Function: Binds double-stranded RNA. Inhibits EIF2AK2 kinase activity (By similarity).

Gene Ontology (GO) - Molecular Function for PRKRIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003725 double-stranded RNA binding ISS --
GO:0004860 protein kinase inhibitor activity ISS --
GO:0005515 protein binding IPI 25416956
GO:0019901 protein kinase binding ISS --
genes like me logo Genes that share ontologies with PRKRIP1: view

Phenotypes for PRKRIP1 Gene

GenomeRNAi human phenotypes for PRKRIP1:
genes like me logo Genes that share phenotypes with PRKRIP1: view

miRNA for PRKRIP1 Gene

miRTarBase miRNAs that target PRKRIP1

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for PRKRIP1 Gene

Localization for PRKRIP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PRKRIP1 Gene

Nucleus, nucleolus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PRKRIP1 Gene COMPARTMENTS Subcellular localization image for PRKRIP1 gene
Compartment Confidence
nucleus 3
cytoskeleton 1
cytosol 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for PRKRIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus ISS --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with PRKRIP1: view

Pathways for PRKRIP1 Gene

SuperPathways for PRKRIP1 Gene

No Data Available

Interacting Proteins for PRKRIP1 Gene

Gene Ontology (GO) - Biological Process for PRKRIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003014 renal system process IDA 21183621
GO:0006469 negative regulation of protein kinase activity ISS --
GO:0042326 negative regulation of phosphorylation ISS --
genes like me logo Genes that share ontologies with PRKRIP1: view

No data available for Pathways by source for PRKRIP1 Gene

Transcripts for PRKRIP1 Gene

Unigene Clusters for PRKRIP1 Gene

PRKR interacting protein 1 (IL11 inducible):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PRKRIP1 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b
SP1: -
SP2: -
SP3:
SP4:
SP5: - -

Relevant External Links for PRKRIP1 Gene

GeneLoc Exon Structure for
PRKRIP1
ECgene alternative splicing isoforms for
PRKRIP1

Expression for PRKRIP1 Gene

mRNA expression in normal human tissues for PRKRIP1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for PRKRIP1 Gene

SOURCE GeneReport for Unigene cluster for PRKRIP1 Gene Hs.722104

genes like me logo Genes that share expressions with PRKRIP1: view

Orthologs for PRKRIP1 Gene

This gene was present in the common ancestor of animals.

Orthologs for PRKRIP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PRKRIP1 36
  • 99.46 (n)
  • 98.91 (a)
PRKRIP1 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia PRKRIP1 36
  • 89.86 (n)
  • 90.22 (a)
PRKRIP1 37
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PRKRIP1 36
  • 92.27 (n)
  • 97.35 (a)
PRKRIP1 37
  • 68 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Prkrip1 36
  • 90.22 (n)
  • 92.39 (a)
Prkrip1 16
Prkrip1 37
  • 91 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia PRKRIP1 37
  • 88 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PRKRIP1 37
  • 68 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Prkrip1 36
  • 90.04 (n)
  • 92.93 (a)
chicken
(Gallus gallus)
Aves PRKRIP1 36
  • 71.79 (n)
  • 75.82 (a)
PRKRIP1 37
  • 75 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.23753 36
tropical clawed frog
(Silurana tropicalis)
Amphibia prkrip1 36
  • 69.43 (n)
  • 68.28 (a)
Str.20382 36
zebrafish
(Danio rerio)
Actinopterygii neurog3 36
prkrip1 36
  • 66.47 (n)
  • 66.47 (a)
prkrip1 37
  • 62 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG8441 37
  • 29 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F37A4.2 37
  • 34 (a)
OneToOne
Species with no ortholog for PRKRIP1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PRKRIP1 Gene

ENSEMBL:
Gene Tree for PRKRIP1 (if available)
TreeFam:
Gene Tree for PRKRIP1 (if available)

Paralogs for PRKRIP1 Gene

No data available for Paralogs for PRKRIP1 Gene

Variants for PRKRIP1 Gene

Sequence variations from dbSNP and Humsavar for PRKRIP1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
VAR_039882 -
VAR_039883 -

Structural Variations from Database of Genomic Variants (DGV) for PRKRIP1 Gene

Variant ID Type Subtype PubMed ID
dgv2121e1 CNV Complex 17122850
nsv428182 CNV Gain 18775914
nsv831083 CNV Loss 17160897
nsv464664 CNV Gain 19166990
nsv464665 CNV Loss 19166990

Relevant External Links for PRKRIP1 Gene

HapMap Linkage Disequilibrium report
PRKRIP1

Disorders for PRKRIP1 Gene

No disorders were found for PRKRIP1 Gene.

No data available for UniProtKB/Swiss-Prot for PRKRIP1 Gene

Publications for PRKRIP1 Gene

  1. C114 is a novel IL-11-inducible nuclear double-stranded RNA-binding protein that inhibits protein kinase R. (PMID: 12679338) Yin Z. … Yang Y.C. (J. Biol. Chem. 2003) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome. (PMID: 15146077) Will C.L. … Luehrmann R. (RNA 2004) 3
  4. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for PRKRIP1 Gene

Sources for PRKRIP1 Gene

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