Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PRKDC Gene

Aliases for PRKDC Gene

  • Protein Kinase, DNA-Activated, Catalytic Polypeptide 2 3 5
  • DNA-PK Catalytic Subunit 3 4
  • EC 2.7.11.1 4 61
  • DNA-PKcs 3 4
  • HYRC1 3 4
  • DNPK1 3 4
  • HYRC 3 4
  • P460 3 4
  • Hyper-Radiosensitivity Of Murine Scid Mutation, Complementing 1 3
  • DNA-Dependent Protein Kinase Catalytic Subunit 3
  • DNA-Dependent Protein Kinase 2
  • DNAPK 3
  • IMD26 3
  • XRCC7 3
  • P350 3

External Ids for PRKDC Gene

Previous HGNC Symbols for PRKDC Gene

  • HYRC
  • HYRC1

Previous GeneCards Identifiers for PRKDC Gene

  • GC08P047830
  • GC08M048689
  • GC08M048408
  • GC08M048735
  • GC08M048848
  • GC08M048685

Summaries for PRKDC Gene

Entrez Gene Summary for PRKDC Gene

  • This gene encodes the catalytic subunit of the DNA-dependent protein kinase (DNA-PK). It functions with the Ku70/Ku80 heterodimer protein in DNA double strand break repair and recombination. The protein encoded is a member of the PI3/PI4-kinase family.[provided by RefSeq, Jul 2010]

GeneCards Summary for PRKDC Gene

PRKDC (Protein Kinase, DNA-Activated, Catalytic Polypeptide) is a Protein Coding gene. Diseases associated with PRKDC include Immunodeficiency 26, With Or Without Neurologic Abnormalities and Artemis Deficiency. Among its related pathways are DNA Double-Strand Break Repair and DNA damage_NHEJ mechanisms of DSBs repair. GO annotations related to this gene include poly(A) RNA binding and protein kinase activity. An important paralog of this gene is ATR.

UniProtKB/Swiss-Prot for PRKDC Gene

  • Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA non-homologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act as a scaffold protein to aid the localization of DNA repair proteins to the site of damage. Found at the ends of chromosomes, suggesting a further role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Also involved in modulation of transcription. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates Ser-139 of histone variant H2AX/H2AFX, thereby regulating DNA damage response mechanism. Phosphorylates DCLRE1C, c-Abl/ABL1, histone H1, HSPCA, c-jun/JUN, p53/TP53, PARP1, POU2F1, DHX9, SRF, XRCC1, XRCC1, XRCC4, XRCC5, XRCC6, WRN, MYC and RFA2. Can phosphorylate C1D not only in the presence of linear DNA but also in the presence of supercoiled DNA. Ability to phosphorylate p53/TP53 in the presence of supercoiled DNA is dependent on C1D. Contributes to the determination of the circadian period length by antagonizing phosphorylation of CRY1 Ser-588 and increasing CRY1 protein stability, most likely through an indirect machanism. Interacts with CRY1 and CRY2; negatively regulates CRY1 phosphorylation.

Tocris Summary for PRKDC Gene

  • DNA-dependent protein kinase (DNA-PK) is a nuclear protein serine/threonine kinase that is a molecular sensor of DNA damage. DNA-PK is involved in the ligation step of the non-homologous end joining (NHEJ) pathway of DNA double strand break (DSB) repair.

Gene Wiki entry for PRKDC Gene

No data available for CIViC summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PRKDC Gene

Genomics for PRKDC Gene

Regulatory Elements for PRKDC Gene

Enhancers for PRKDC Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G048626 1.7 FANTOM5 Ensembl ENCODE dbSUPER 31.6 -668.8 -668810 4.6 TBP PKNOX1 NFIB ZFP64 RAD21 GTF3C2 POLR3A GATA2 RCOR1 FOS PRKDC SNAI2 ENSG00000253688 RPL29P19 EFCAB1 GC08P048636 LOC105375823
GH08G047959 1.2 ENCODE 28.5 -0.5 -454 3.5 MLX CREB3L1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 ZNF610 PRKDC SNAI2 RPL10AP2 RPL29P19 MCM4 PIR48725
GH08G048007 1.1 ENCODE 18.6 -48.7 -48677 2.5 HDGF HNRNPUL1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 PRKDC SNAI2 RPL29P19 ENSG00000255366 GC08M047394 PIR60583
GH08G048553 1.4 FANTOM5 ENCODE dbSUPER 12.7 -595.6 -595595 4.8 SUZ12 SIN3A MAX CEBPG ZIC2 RAD21 FOSL1 POLR2A GATA2 ZNF548 SNAI2 PRKDC LOC101929268 ENSG00000253688
GH08G047997 1.2 FANTOM5 ENCODE 11.8 -38.6 -38608 3.5 HDAC1 FEZF1 RAD21 TCF12 ZNF121 ZNF143 EGR2 ZNF654 CEBPB ZEB2 PRKDC MCM4 ENSG00000255366 LOC105375819 UBE2V2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PRKDC on UCSC Golden Path with GeneCards custom track

Promoters for PRKDC Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000224278 -117 2601 MLX CREB3L1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 ZNF610

Genomic Location for PRKDC Gene

Chromosome:
8
Start:
47,773,108 bp from pter
End:
47,960,183 bp from pter
Size:
187,076 bases
Orientation:
Minus strand

Genomic View for PRKDC Gene

Genes around PRKDC on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PRKDC Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRKDC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRKDC Gene

Proteins for PRKDC Gene

  • Protein details for PRKDC Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P78527-PRKDC_HUMAN
    Recommended name:
    DNA-dependent protein kinase catalytic subunit
    Protein Accession:
    P78527
    Secondary Accessions:
    • P78528
    • Q13327
    • Q13337
    • Q14175
    • Q59H99
    • Q7Z611
    • Q96SE6
    • Q9UME3

    Protein attributes for PRKDC Gene

    Size:
    4128 amino acids
    Molecular mass:
    469089 Da
    Quaternary structure:
    • DNA-PK is a heterotrimer of PRKDC and the Ku p70/YRCC6-p86/XRCC5 dimer. Formation of this complex may be promoted by interaction with ILF3. Associates with the DNA-bound Ku heterodimer, but it can also bind to and be activated by free DNA. The DNA-PK heterotrimer associates with the LIG4-XRCC4 complex to form the core of the non-homologous end joining (NHEJ) complex. Additional components of the NHEJ complex include NHEJ1/XLF and C9ORF142/PAXX. Interacts with DNA-PKcs-interacting protein (KIP) with the region upstream the kinase domain. PRKDC alone also interacts with and phosphorylates DCLRE1C, thereby activating the latent endonuclease activity of this protein. Interacts with C1D. Interacts with TTI1 and TELO2. Interacts with CIB1. Interacts with SETX (PubMed:23149945). Interacts with NR4A3; the DNA-dependent protein kinase complex DNA-PK phosphorylates and activates NR4A3 and prevents NR4A3 ubiquitinylation and degradation (PubMed:25852083). Interacts with BRAT1.

    Three dimensional structures from OCA and Proteopedia for PRKDC Gene

    Alternative splice isoforms for PRKDC Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PRKDC Gene

Selected DME Specific Peptides for PRKDC Gene

P78527:
  • YHCAAYNCAI
  • FPPLADRF
  • LRLRRRF
  • AAQKGFN
  • KMKQYKDELLASCL
  • NTEEVFRPYA
  • GIVDPVDSTLRDFCG
  • KDNSVGIQLLG
  • FEHPLSEC
  • PLISGFYKL
  • CGRPQTECRHK
  • ETRLPSNT
  • FMQNYSSID
  • LKSRFTK
  • AACELLHS
  • CLASLQQP
  • WKVPTYKDY
  • LACDVDQVTRQLYEPLVMQLIHW
  • SLYSPKIE
  • GIHYMVVE
  • KFYGELA
  • EGNELTK
  • YNYSKCT
  • SLVEQFVFEALV
  • TMDVFVKEP
  • ELAKLYRS
  • ATQFLPVPELMPFRLTRQ
  • KFYQGFLF
  • LSFAVPF
  • EFLRNELE
  • KRAVFRHNLEIIKT

Post-translational modifications for PRKDC Gene

  • Autophosphorylated on Ser-2056, Thr-2609, Thr-2638 and Thr-2647. Ser-2056 and Thr-2609 are DNA damage-inducible phosphorylation sites (inducible with ionizing radiation, IR) dephosphorylated by PPP5C. Autophosphorylation induces a conformational change that leads to remodeling of the DNA-PK complex, requisite for efficient end processing and DNA repair.
  • Polyubiquitinated by RNF144A, leading to proteasomal degradation.
  • S-nitrosylated by GAPDH.
  • Ubiquitination at posLast=108108, posLast=117117, posLast=148148, Lys205, posLast=225225, Lys236, posLast=254254, Lys263, Lys310, Lys337, posLast=374374, posLast=471471, Lys493, Lys520, posLast=525525, Lys681, posLast=689689, posLast=692692, posLast=700700, Lys801, Lys828, posLast=838838, posLast=868868, Lys881, Lys963, Lys1042, Lys1051, posLast=10571057, posLast=10741074, posLast=11931193, Lys1209, Lys1334, posLast=13611361, Lys1407, posLast=14121412, Lys1422, posLast=14561456, posLast=14891489, posLast=16171617, Lys1627, posLast=16421642, posLast=17441744, Lys1807, Lys1857, Lys1869, Lys1875, Lys1895, posLast=19131913, posLast=19171917, Lys1973, Lys1985, posLast=21022102, Lys2127, posLast=21322132, posLast=22592259, Lys2313, posLast=23342334, Lys2359, posLast=23692369, posLast=24182418, Lys2433, Lys2441, posLast=26832683, posLast=26942694, posLast=27152715, Lys2717, Lys2738, posLast=27642764, posLast=27862786, Lys2806, Lys2835, posLast=29082908, Lys2928, posLast=29502950, posLast=30673067, Lys3128, posLast=31473147, posLast=31583158, posLast=31723172, Lys3192, Lys3196, posLast=32483248, posLast=32573257, posLast=32603260, Lys3302, posLast=33183318, posLast=33553355, posLast=33723372, posLast=34263426, posLast=34553455, Lys3621, posLast=36313631, Lys3655, Lys3669, posLast=36913691, posLast=37103710, Lys3753, posLast=38253825, Lys3840, Lys3845, Lys3849, Lys3860, posLast=38843884, Lys4007, Lys4014, Lys4023, Lys4036, Lys4050, posLast=40704070, and Lys4105
  • Modification sites at PhosphoSitePlus

Other Protein References for PRKDC Gene

Domains & Families for PRKDC Gene

Suggested Antigen Peptide Sequences for PRKDC Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P78527

UniProtKB/Swiss-Prot:

PRKDC_HUMAN :
  • Belongs to the PI3/PI4-kinase family.
Family:
  • Belongs to the PI3/PI4-kinase family.
genes like me logo Genes that share domains with PRKDC: view

No data available for Gene Families for PRKDC Gene

Function for PRKDC Gene

Molecular function for PRKDC Gene

GENATLAS Biochemistry:
DNA dependent serine/threonine protein kinase catalytic subunit,dimerizing with Ku antigen (see KUP70 (CLU),KUP80),involved in DNA double-strand break repair by end joining (non homologous recombination) and V(D)J recombination,same as HYRC1
UniProtKB/Swiss-Prot CatalyticActivity:
ATP + a protein = ADP + a phosphoprotein.
UniProtKB/Swiss-Prot EnzymeRegulation:
Inhibited by wortmannin. Activity of the enzyme seems to be attenuated by autophosphorylation.
UniProtKB/Swiss-Prot Function:
Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA non-homologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act as a scaffold protein to aid the localization of DNA repair proteins to the site of damage. Found at the ends of chromosomes, suggesting a further role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Also involved in modulation of transcription. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates Ser-139 of histone variant H2AX/H2AFX, thereby regulating DNA damage response mechanism. Phosphorylates DCLRE1C, c-Abl/ABL1, histone H1, HSPCA, c-jun/JUN, p53/TP53, PARP1, POU2F1, DHX9, SRF, XRCC1, XRCC1, XRCC4, XRCC5, XRCC6, WRN, MYC and RFA2. Can phosphorylate C1D not only in the presence of linear DNA but also in the presence of supercoiled DNA. Ability to phosphorylate p53/TP53 in the presence of supercoiled DNA is dependent on C1D. Contributes to the determination of the circadian period length by antagonizing phosphorylation of CRY1 Ser-588 and increasing CRY1 protein stability, most likely through an indirect machanism. Interacts with CRY1 and CRY2; negatively regulates CRY1 phosphorylation.

Enzyme Numbers (IUBMB) for PRKDC Gene

Gene Ontology (GO) - Molecular Function for PRKDC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003690 double-stranded DNA binding IDA,IEA 22504299
GO:0003723 RNA binding IDA 22658674
GO:0004672 protein kinase activity IDA,IMP 22504299
GO:0004674 protein serine/threonine kinase activity TAS --
genes like me logo Genes that share ontologies with PRKDC: view

Phenotypes for PRKDC Gene

MGI mutant phenotypes for PRKDC:
inferred from 14 alleles
GenomeRNAi human phenotypes for PRKDC:
genes like me logo Genes that share phenotypes with PRKDC: view

Human Phenotype Ontology for PRKDC Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for PRKDC Gene

MGI Knock Outs for PRKDC:

Animal Model Products

miRNA for PRKDC Gene

miRTarBase miRNAs that target PRKDC

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for PRKDC

Flow Cytometry Products

No data available for Transcription Factor Targets and HOMER Transcription for PRKDC Gene

Localization for PRKDC Gene

Subcellular locations from UniProtKB/Swiss-Prot for PRKDC Gene

Nucleus. Nucleus, nucleolus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PRKDC gene
Compartment Confidence
nucleus 5
cytosol 5
extracellular 4
plasma membrane 1

Gene Ontology (GO) - Cellular Components for PRKDC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000784 nuclear chromosome, telomeric region IDA 19135898
GO:0005634 nucleus IEA,IDA 22504299
GO:0005654 nucleoplasm TAS --
GO:0005667 transcription factor complex IDA 19303849
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with PRKDC: view

Pathways & Interactions for PRKDC Gene

genes like me logo Genes that share pathways with PRKDC: view

SIGNOR curated interactions for PRKDC Gene

Activates:
Inactivates:
Is activated by:
Is inactivated by:
Other effect:

Gene Ontology (GO) - Biological Process for PRKDC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000723 telomere maintenance IEA --
GO:0001756 somitogenesis IEA --
GO:0001933 negative regulation of protein phosphorylation ISS --
GO:0002326 B cell lineage commitment IEA --
GO:0002328 pro-B cell differentiation IEA --
genes like me logo Genes that share ontologies with PRKDC: view

Drugs & Compounds for PRKDC Gene

(19) Drugs for PRKDC Gene - From: DrugBank, ApexBio, DGIdb, FDA Approved Drugs, HMDB, Tocris, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Caffeine Approved Nutra Antagonist, Target A1 and A2B antagonist. CNS stimulant 396
Cafcit Injection Approved September 1999 Pharma 0
Adenosine triphosphate Approved Nutra 0
SF1126 Investigational Pharma inhibitor, Target Kinase Inhibitors 0
Wortmannin Pharma PI3K inhibitor,selective and irreversible 0

(6) Additional Compounds for PRKDC Gene - From: Novoseek, Tocris, and HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
ADP
  • Adenosindiphosphorsaeure
  • Adenosine 5'-pyrophosphate
  • Adenosine diphosphate
  • Adenosine pyrophosphate
  • Adenosine-5'-diphosphate
Full agonist, Agonist 58-64-0
NU 7441
503468-95-9

(4) Tocris Compounds for PRKDC Gene

Compound Action Cas Number
DMNB DNA-PK inhibitor 20357-25-9
KU 0060648 Dual DNA-PK and PI 3-K inhibitor 881375-00-4
NU 7026 Selective DNA-PK inhibitor 154447-35-5
NU 7441 Potent and selective DNA-PK inhibitor 503468-95-9

(9) ApexBio Compounds for PRKDC Gene

Compound Action Cas Number
Daun02 Cell viability inhibitor,DNA synthisis inhibitor 290304-24-4
DMNB 20357-25-9
ETP-46464 ATR inhibitor,potent and selective 1345675-02-6
KU-0060648 Dual DNA-PK/PI3-K inhibitor, ATP-competitive 881375-00-4
NU 7026 DNPK inhibitor,ATP-competitive and potent 154447-35-5
NU7441 (KU-57788) DNA-PK inhibitor 503468-95-9
PI-103 Class I PI3K, mTOR and DNA-PK inhibitor 371935-74-9
Torin 2 MTOR inhibitor,highly potent and selective 1223001-51-1
Wortmannin PI3K inhibitor,selective and irreversible 19545-26-7
genes like me logo Genes that share compounds with PRKDC: view

Drug Products

Transcripts for PRKDC Gene

Unigene Clusters for PRKDC Gene

Protein kinase, DNA-activated, catalytic polypeptide:
Representative Sequences:

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for PRKDC

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PRKDC Gene

No ASD Table

Relevant External Links for PRKDC Gene

GeneLoc Exon Structure for
PRKDC
ECgene alternative splicing isoforms for
PRKDC

Expression for PRKDC Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PRKDC Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for PRKDC Gene

This gene is overexpressed in Bone (14.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for PRKDC Gene



Protein tissue co-expression partners for PRKDC Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of PRKDC Gene:

PRKDC

SOURCE GeneReport for Unigene cluster for PRKDC Gene:

Hs.491682

Evidence on tissue expression from TISSUES for PRKDC Gene

  • Nervous system(4.8)
  • Lung(4.7)
  • Liver(4.5)
  • Intestine(2.8)
  • Spleen(2.4)
  • Blood(2)
  • Kidney(2)

Phenotype-based relationships between genes and organs from Gene ORGANizer for PRKDC Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
Systems:
  • digestive
  • immune
  • lymphatic
  • nervous
  • respiratory
  • skeleton
Organs:
Head and neck:
  • brain
  • head
  • mouth
  • skull
Thorax:
  • bronchus
  • lung
General:
  • blood
  • bone marrow
  • white blood cell
genes like me logo Genes that share expression patterns with PRKDC: view

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for PRKDC Gene

Orthologs for PRKDC Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for PRKDC Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PRKDC 34 35
  • 99.61 (n)
dog
(Canis familiaris)
Mammalia PRKDC 34 35
  • 85.29 (n)
mouse
(Mus musculus)
Mammalia Prkdc 34 16 35
  • 81.24 (n)
rat
(Rattus norvegicus)
Mammalia Prkdc 34
  • 81.02 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 80 (a)
OneToMany
-- 35
  • 79 (a)
OneToMany
-- 35
  • 75 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 79 (a)
OneToMany
-- 35
  • 77 (a)
OneToMany
-- 35
  • 71 (a)
OneToMany
cow
(Bos Taurus)
Mammalia PRKDC 34 35
  • 78.87 (n)
chicken
(Gallus gallus)
Aves PRKDC 34 35
  • 70.37 (n)
lizard
(Anolis carolinensis)
Reptilia PRKDC 35
  • 67 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia prkdc 34
  • 66.03 (n)
African clawed frog
(Xenopus laevis)
Amphibia prkdc-A 34
zebrafish
(Danio rerio)
Actinopterygii wu:fa96e12 34
  • 61.39 (n)
PRKDC 35
  • 58 (a)
OneToOne
wufa96e12 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003967 34
  • 40.86 (n)
fruit fly
(Drosophila melanogaster)
Insecta mei-41 35
  • 14 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea atl-1 35
  • 14 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes MEC1 35
  • 15 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 39 (a)
OneToOne
Species where no ortholog for PRKDC was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PRKDC Gene

ENSEMBL:
Gene Tree for PRKDC (if available)
TreeFam:
Gene Tree for PRKDC (if available)

Paralogs for PRKDC Gene

Paralogs for PRKDC Gene

genes like me logo Genes that share paralogs with PRKDC: view

Variants for PRKDC Gene

Sequence variations from dbSNP and Humsavar for PRKDC Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs55735910 A metastatic melanoma sample 47,881,444(+) TGTCA(A/G)CAAGT reference, missense
rs587777685 Pathogenic, Immunodeficiency 26 with or without neurologic abnormalities (IMD26) [MIM:615966] 47,820,870(+) ATGTC(A/C)GCAGG reference, missense
rs587777686 Pathogenic, Immunodeficiency 26 with or without neurologic abnormalities (IMD26) [MIM:615966] 47,789,188(+) CTAAG(A/G)CATTA reference, missense
rs758032015 A lung adenocarcinoma sample 47,943,872(+) TATCT(A/C)TTCAG intron-variant, reference, missense
rs781401034 A colorectal adenocarcinoma sample 47,898,527(+) TGATG(C/T)GGCAT reference, missense

Structural Variations from Database of Genomic Variants (DGV) for PRKDC Gene

Variant ID Type Subtype PubMed ID
esv2663658 CNV deletion 23128226
esv2759611 CNV loss 17122850
esv3617103 CNV loss 21293372
esv3617105 CNV loss 21293372
nsv478776 CNV novel sequence insertion 20440878
nsv6179 CNV deletion 18451855
nsv6180 CNV insertion 18451855
nsv831309 CNV loss 17160897
nsv8337 CNV gain 18304495

Variation tolerance for PRKDC Gene

Gene Damage Index Score: 6.58; 78.01% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PRKDC Gene

Human Gene Mutation Database (HGMD)
PRKDC
SNPedia medical, phenotypic, and genealogical associations of SNPs for
PRKDC

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PRKDC Gene

Disorders for PRKDC Gene

MalaCards: The human disease database

(9) MalaCards diseases for PRKDC Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
immunodeficiency 26, with or without neurologic abnormalities
  • immunodeficiency 26 with or without neurologic abnormalities
artemis deficiency
ataxia-telangiectasia
  • ataxia telangiectasia
alpha-thalassemia/mental retardation syndrome
  • mental retardation, x-linked
severe combined immunodeficiency
  • combined t and b cell inborn immunodeficiency
- elite association - COSMIC cancer census association via MalaCards
Search PRKDC in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

PRKDC_HUMAN
  • Immunodeficiency 26 with or without neurologic abnormalities (IMD26) [MIM:615966]: A form of severe combined immunodeficiency characterized by reduced or absent T and B cells, recurrent candidiasis, and lower respiratory tract infections. Some patients show dysmorphic features, severe growth failure, microcephaly, seizures, and impaired neurological functions. {ECO:0000269 PubMed:19075392, ECO:0000269 PubMed:23722905}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for PRKDC

Genetic Association Database (GAD)
PRKDC
Human Genome Epidemiology (HuGE) Navigator
PRKDC
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PRKDC
genes like me logo Genes that share disorders with PRKDC: view

No data available for Genatlas for PRKDC Gene

Publications for PRKDC Gene

  1. Gene for the catalytic subunit of the human DNA-activated protein kinase maps to the site of the XRCC7 gene on chromosome 8. (PMID: 7638222) Sipley J.D. … Anderson C.W. (Proc. Natl. Acad. Sci. U.S.A. 1995) 2 3 4 22 64
  2. Tagging single nucleotide polymorphisms in phosphoinositide-3-kinase-related protein kinase genes involved in DNA damage "checkpoints" and lung cancer susceptibility. (PMID: 18451257) Hu Z. … Shen H. (Clin. Cancer Res. 2008) 3 22 46 64
  3. Autophosphorylation of the DNA-dependent protein kinase catalytic subunit is required for rejoining of DNA double-strand breaks. (PMID: 12231622) Chan D.W. … Chen D.J. (Genes Dev. 2002) 3 4 22 64
  4. Frameshift mutation in PRKDC, the gene for DNA-PKcs, in the DNA repair-defective, human, glioma-derived cell line M059J. (PMID: 11418067) Anderson C.W. … Allalunis-Turner M.J. (Radiat. Res. 2001) 3 4 22 64
  5. MCM4 and PRKDC, human genes encoding proteins MCM4 and DNA-PKcs, are close neighbours located on chromosome 8q12-->q13. (PMID: 9284934) Ladenburger E.M. … Knippers R. (Cytogenet. Cell Genet. 1997) 3 4 22 64

Products for PRKDC Gene

Sources for PRKDC Gene

Content
Loading form....