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Aliases for PRKD3 Gene

Aliases for PRKD3 Gene

  • Protein Kinase D3 2 3 5
  • Protein Kinase C Nu Type 3 4
  • Protein Kinase EPK2 3 4
  • EC 2.7.11.13 4 63
  • NPKC-NU 3 4
  • PRKCN 3 4
  • EPK2 3 4
  • Protein Kinase C, Nu 2
  • EC 2.7.11 63
  • PKC-NU 3
  • PKD3 3

External Ids for PRKD3 Gene

Previous HGNC Symbols for PRKD3 Gene

  • PRKCN

Previous GeneCards Identifiers for PRKD3 Gene

  • GC02M037389
  • GC02M037477
  • GC02M037217

Summaries for PRKD3 Gene

Entrez Gene Summary for PRKD3 Gene

  • This gene belongs to the multigene protein kinase D family of serine/threonine kinases, which bind diacylglycerol and phorbol esters. Members of this family are characterized by an N-terminal regulatory domain comprised of a tandem repeat of cysteine-rich zinc-finger motifs and a pleckstrin domain. The C-terminal region contains the catalytic domain and is distantly related to calcium-regulated kinases. Catalytic activity of this enzyme promotes its nuclear localization. This protein has been implicated in a variety of functions including negative regulation of human airway epithelial barrier formation, growth regulation of breast and prostate cancer cells, and vesicle trafficking. [provided by RefSeq, Jan 2015]

GeneCards Summary for PRKD3 Gene

PRKD3 (Protein Kinase D3) is a Protein Coding gene. Among its related pathways are Insulin secretion and Ras signaling pathway. GO annotations related to this gene include transferase activity, transferring phosphorus-containing groups and protein tyrosine kinase activity. An important paralog of this gene is PRKD1.

UniProtKB/Swiss-Prot for PRKD3 Gene

  • Converts transient diacylglycerol (DAG) signals into prolonged physiological effects, downstream of PKC. Involved in resistance to oxidative stress (By similarity).

Tocris Summary for PRKD3 Gene

  • The protein kinase D (PKD) family of serine/threonine protein kinases has three members: PKD1-3. They occupy a unique position in signaling pathways initiated by diacylglycerol and protein kinase C. PKDs are involved in cell survival, migration, differentiation and proliferation.

Gene Wiki entry for PRKD3 Gene

No data available for PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PRKD3 Gene

Genomics for PRKD3 Gene

Regulatory Elements for PRKD3 Gene

Enhancers for PRKD3 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around PRKD3 on UCSC Golden Path with GeneCards custom track

Promoters for PRKD3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around PRKD3 on UCSC Golden Path with GeneCards custom track

Genomic Location for PRKD3 Gene

Chromosome:
2
Start:
37,250,502 bp from pter
End:
37,324,808 bp from pter
Size:
74,307 bases
Orientation:
Minus strand

Genomic View for PRKD3 Gene

Genes around PRKD3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PRKD3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRKD3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRKD3 Gene

Proteins for PRKD3 Gene

  • Protein details for PRKD3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O94806-KPCD3_HUMAN
    Recommended name:
    Serine/threonine-protein kinase D3
    Protein Accession:
    O94806
    Secondary Accessions:
    • D6W587
    • Q53TR7
    • Q8NEL8

    Protein attributes for PRKD3 Gene

    Size:
    890 amino acids
    Molecular mass:
    100471 Da
    Cofactor:
    Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for PRKD3 Gene

    Alternative splice isoforms for PRKD3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PRKD3 Gene

Proteomics data for PRKD3 Gene at MOPED

Post-translational modifications for PRKD3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for PRKD3 Gene

Antibody Products

  • R&D Systems Antibodies for PRKD3 (PRKD3/nPKC nu)
  • Cell Signaling Technology (CST) Antibodies for PRKD3 (PRKD3)

Domains & Families for PRKD3 Gene

Gene Families for PRKD3 Gene

Suggested Antigen Peptide Sequences for PRKD3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O94806

UniProtKB/Swiss-Prot:

KPCD3_HUMAN :
  • Contains 1 PH domain.
  • Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. PKD subfamily.
  • Contains 2 phorbol-ester/DAG-type zinc fingers.
Domain:
  • Contains 1 PH domain.
  • Contains 1 protein kinase domain.
Family:
  • Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. PKD subfamily.
Similarity:
  • Contains 2 phorbol-ester/DAG-type zinc fingers.
genes like me logo Genes that share domains with PRKD3: view

Function for PRKD3 Gene

Molecular function for PRKD3 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
ATP + a protein = ADP + a phosphoprotein.
UniProtKB/Swiss-Prot EnzymeRegulation:
Activated by DAG and phorbol esters. Phorbol-ester/DAG-type domains 1 and 2 bind both DAG and phorbol ester with high affinity and mediate translocation to the cell membrane. Autophosphorylation of Ser-735 and phosphorylation of Ser-731 by PKC relieves auto-inhibition by the PH domain.
UniProtKB/Swiss-Prot Function:
Converts transient diacylglycerol (DAG) signals into prolonged physiological effects, downstream of PKC. Involved in resistance to oxidative stress (By similarity).

Enzyme Numbers (IUBMB) for PRKD3 Gene

Gene Ontology (GO) - Molecular Function for PRKD3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004697 protein kinase C activity IEA --
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with PRKD3: view
genes like me logo Genes that share phenotypes with PRKD3: view

Animal Model Products

  • Taconic Biosciences Mouse Models for PRKD3

CRISPR Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PRKD3 Gene

Localization for PRKD3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PRKD3 Gene

Cytoplasm. Membrane. Note=Translocation to the cell membrane is required for kinase activation.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PRKD3 Gene COMPARTMENTS Subcellular localization image for PRKD3 gene
Compartment Confidence
nucleus 5
cytosol 4
mitochondrion 2
plasma membrane 2
endoplasmic reticulum 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for PRKD3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
genes like me logo Genes that share ontologies with PRKD3: view

Pathways & Interactions for PRKD3 Gene

genes like me logo Genes that share pathways with PRKD3: view

SIGNOR curated interactions for PRKD3 Gene

Other effect:

Gene Ontology (GO) - Biological Process for PRKD3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006468 protein phosphorylation IEA --
genes like me logo Genes that share ontologies with PRKD3: view

Drugs & Compounds for PRKD3 Gene

(9) Drugs for PRKD3 Gene - From: ApexBio, DGIdb, HMDB, Tocris, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Adenosine triphosphate Approved Nutra 0
CID 2011756 Pharma PKD inhibitor, Pan protein kinase D (PKD) inhibitor; cell permeable 0
CID 755673 Pharma PKD inhibitor, Selective protein kinase D inhibitor 0
bryostatin Pharma inhibitor 0
BRYOSTATIN-1 Pharma 0

(7) Additional Compounds for PRKD3 Gene - From: HMDB and Tocris

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
ADP
  • Adenosindiphosphorsaeure
  • Adenosine 5'-pyrophosphate
  • Adenosine diphosphate
  • Adenosine pyrophosphate
  • Adenosine-5'-diphosphate
Full agonist, Agonist 58-64-0
Diglycerides Group A
  • 1,2-Dimyristoyl-rac-glycerol
  • DAG(14:0/14:0)
  • DAG(28:0)
  • DG(14:0/14:0)
  • DG(28:0)
Diglycerides Group B
  • 1-Palmitoleoyl-2-arachidonyl-sn-glycerol
  • DAG(16:1/20:0)
  • DAG(16:1n7/20:0)
  • DAG(16:1w7/20:0)
  • DAG(36:1)
Diglycerides Group C
  • 1-Myristoyl-3-stearoyl-sn-glycerol
  • 1-Tetradecanoyl-3-octadecanoyl-sn-glycerol
  • DAG(14:0/0:0/18:0)
  • DAG(32:0)
  • DG(32:0)
Diglycerides Group D
  • 1,2-Didocosahexaenoyl-rac-glycerol
  • DAG(22:6/22:6)
  • DAG(22:6n3/22:6n3)
  • DAG(22:6w3/22:6w3)
  • DAG(44:12)

(4) Tocris Compounds for PRKD3 Gene

Compound Action Cas Number
CID 2011756 Pan protein kinase D (PKD) inhibitor; cell permeable 638156-11-3
CID 755673 Selective protein kinase D inhibitor 521937-07-5
CRT 0066101 Potent protein kinase D (PKD) inhibitor
kb NB 142-70 Selective PKD inhibitor; analog of CID 755673 (Cat. No. 3327) 1233533-04-4

(2) ApexBio Compounds for PRKD3 Gene

Compound Action Cas Number
CID 2011756 PKD inhibitor 638156-11-3
CID 755673 PKD inhibitor 521937-07-5
genes like me logo Genes that share compounds with PRKD3: view

Drug Products

Transcripts for PRKD3 Gene

Unigene Clusters for PRKD3 Gene

Protein kinase D3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PRKD3 Gene

No ASD Table

Relevant External Links for PRKD3 Gene

GeneLoc Exon Structure for
PRKD3
ECgene alternative splicing isoforms for
PRKD3

Expression for PRKD3 Gene

mRNA expression in normal human tissues for PRKD3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for PRKD3 Gene

This gene is overexpressed in Lymph node (35.6), Placenta (8.6), Pancreas (8.2), and Platelet (7.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for PRKD3 Gene



SOURCE GeneReport for Unigene cluster for PRKD3 Gene Hs.660757

mRNA Expression by UniProt/SwissProt for PRKD3 Gene

O94806-KPCD3_HUMAN
Tissue specificity: Ubiquitous.
genes like me logo Genes that share expression patterns with PRKD3: view

Protein tissue co-expression partners for PRKD3 Gene

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for PRKD3 Gene

Orthologs for PRKD3 Gene

This gene was present in the common ancestor of animals.

Orthologs for PRKD3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia PRKD3 35
  • 93.63 (n)
  • 97.64 (a)
PRKD3 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PRKD3 35
  • 94.61 (n)
  • 97.19 (a)
PRKD3 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Prkd3 35
  • 89.7 (n)
  • 95.96 (a)
Prkd3 16
Prkd3 36
  • 96 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia PRKD3 35
  • 100 (n)
  • 100 (a)
PRKD3 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Prkd3 35
  • 89.93 (n)
  • 95.84 (a)
oppossum
(Monodelphis domestica)
Mammalia PRKD3 36
  • 94 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PRKD3 36
  • 92 (a)
OneToOne
chicken
(Gallus gallus)
Aves PRKD3 35
  • 82.21 (n)
  • 89.78 (a)
PRKD3 36
  • 90 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PRKD3 36
  • 89 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii prkd3 35
  • 74.01 (n)
  • 84.34 (a)
prkd3 36
  • 82 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000070 35
  • 55.19 (n)
  • 60.28 (a)
fruit fly
(Drosophila melanogaster)
Insecta PKD 35
  • 55.77 (n)
  • 59.4 (a)
worm
(Caenorhabditis elegans)
Secernentea dkf-2 35
  • 55.75 (n)
  • 56.38 (a)
dkf-1 36
  • 41 (a)
ManyToMany
F48G7.9 36
  • 18 (a)
ManyToMany
R12G8.1 36
  • 33 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 50 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
Species with no ortholog for PRKD3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for PRKD3 Gene

ENSEMBL:
Gene Tree for PRKD3 (if available)
TreeFam:
Gene Tree for PRKD3 (if available)

Paralogs for PRKD3 Gene

Paralogs for PRKD3 Gene

genes like me logo Genes that share paralogs with PRKD3: view

Variants for PRKD3 Gene

Sequence variations from dbSNP and Humsavar for PRKD3 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs11896614 - 37,316,401(+) TCCAT(C/T)AGAGA intron-variant, reference, missense
rs17852819 - 37,293,178(+) ATCTG(C/T)TGAGG reference, missense, utr-variant-5-prime
rs17856887 - 37,274,435(+) TCCCT(C/T)GCCCT reference, missense
VAR_042336 A glioblastoma multiforme sample
rs34280934 - 37,289,400(+) TCTTG(A/G)AACTG intron-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for PRKD3 Gene

Variant ID Type Subtype PubMed ID
nsv828953 CNV Loss 20364138

Variation tolerance for PRKD3 Gene

Residual Variation Intolerance Score: 11.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.68; 72.99% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PRKD3 Gene

HapMap Linkage Disequilibrium report
PRKD3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PRKD3 Gene

Disorders for PRKD3 Gene

Relevant External Links for PRKD3

Genetic Association Database (GAD)
PRKD3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PRKD3

No disorders were found for PRKD3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PRKD3 Gene

Publications for PRKD3 Gene

  1. PKCnu, a new member of the protein kinase C family, composes a fourth subfamily with PKCmu. (PMID: 10231560) Hayashi A. … Saito T. (Biochim. Biophys. Acta 1999) 2 3 4 23 67
  2. The nuclear import of protein kinase D3 requires its catalytic activity. (PMID: 16380377) Rey O. … Rozengurt E. (J. Biol. Chem. 2006) 3 23
  3. Protein kinase C-independent effects of protein kinase D3 in glucose transport in L6 myotubes. (PMID: 15496505) Chen J. … Wang Q.J. (Mol. Pharmacol. 2005) 3 23
  4. Protein kinase D regulates basolateral membrane protein exit from trans-Golgi network. (PMID: 14743217) Yeaman C. … Malhotra V. (Nat. Cell Biol. 2004) 3 23
  5. Regulation of protein kinase Cnu by the B-cell antigen receptor. (PMID: 12506120) Matthews S.A. … Scharenberg A.M. (J. Biol. Chem. 2003) 3 23

Products for PRKD3 Gene

Sources for PRKD3 Gene