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Aliases & Descriptions for PRKD1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 2.7.11.13 3 | | PKC-MU 2 | | PKC-mu 1 | | PKCM 1, 2 | | PKD 1, 2, 3 | | PKD1 3 | | PRKCM 2, 3 | | nPKC-D1 3 | | nPKC-mu 3 |
| | | Descriptions |
|---|
| Protein kinase C mu type 3 | | Protein kinase D 3 | | protein kinase C, mu 1, 2 | | protein kinase D1 2 |
|
| | Search outside databases for aliases for PRKD1 gene |
Summaries for PRKD1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for PRKD1: Members of the protein kinase C (PKC) family function in many extracellular receptor-mediated signal transduction pathways. See PRKCA (MIM 176960) for further background information. The PRKCM gene encodes a cytosolic serine-threonine kinase that binds to the trans-Golgi network and regulates the fission of transport carriers specifically destined to the cell surface.[supplied by OMIM] UniProtKB/Swiss-Prot: KPCD1_HUMAN, Q15139Function: Calcium-independent, phospholipid-dependent, serine- and threonine-specific kinase involved in resistance to oxidative stressGene Wiki entry for PRKD1 (Protein_kinase_D1) |
Genomic Location for PRKD1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the PRKD1 gene 
Entrez Gene cytogenetic band: 14q11 Ensembl cytogenetic band: 14q12 HGNC cytogenetic band: 14q11PRKD1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 14 GeneLoc Exon Structure GeneLoc location for GC14M029115:
(about GC identifiers)
Start:
|
29,115,436 bp from pter |
End:
|
29,466,699 bp from pter |
Size:
|
351,264 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000014.7 NT_026437.11
| Proteins for PRKD1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: KPCD1_HUMAN, Q15139 (See
protein sequence)Recommended Name: Serine/threonine-protein kinase D1 Size: 912 amino acids; 101704 Da
Subunit: Interacts (via N-terminus) with ADAP1/CENTA1. Interacts with Src
Secondary accessions: A6NL64 B2RAF6Post-translational modifications:
Phosphorylation of Ser-738 and/or Ser-742 in activated PKD is mediated by transphosphorylation (By similarity). Phosphorylation of Tyr-463 mediated by the Src/Abl pathway in response to oxidative stress activates the kinase1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002733.2
ENSEMBL proteins: ENSP00000333568 ENSP00000374634 ENSP00000374635 ENSP00000379907
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: PRKD1 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for PRKD1: Assays for PRKD1: | Protein
Domains/ Families for PRKD1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q15139
ProtoNet protein and cluster: Q15139 1 Blocks protein family: IPB001849 Pleckstrin-like
UniProtKB/Swiss-Prot: KPCD1_HUMAN, Q15139Similarity: Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. PKD subfamilySimilarity: Contains 1 PH domainSimilarity: Contains 2 phorbol-ester/DAG-type zinc fingersSimilarity: Contains 1 protein kinase domain | Gene Function for PRKD1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002742
Applied Biosystems Silencer® siRNAs for PRKD1
Sigma-Aldrich siRNA and siRNA Panels for PRKD1  Sigma-Aldrich shRNA Panels and shRNA for PRKD1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002742                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002742                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002742 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002742
UniProtKB/Swiss-Prot: KPCD1_HUMAN, Q15139Function: Calcium-independent, phospholipid-dependent, serine- and threonine-specific kinase involved in resistance to oxidative stressCatalytic activity: ATP + a protein = ADP + a phosphoproteinEnzyme regulation: Activated by diacylglycerol and phorbol estersEnzyme Number (IUBMB): EC 2.7.11.13 3 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Prkd1):
5/8 Gene Ontology (GO) molecular function terms (links to tree view) (see all 8
): About this table | Pathways & Interactions for PRKD1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/49 Sigma-Aldrich "Your Favorite Gene" Pathways for PRKD1 (Your Favorite Gene powered by Ingenuity) (see all 49
) 
Gene Network CentralTM Interacting Genes and Proteins Network for PRKD1 
5/62 Interacting proteins for PRKD1 (ENSP000003335683 Q151391) via UniProtKB, MINT, and/or STRING (see all 62
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for PRKD1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for PRKD1 |
Compounds for PRKD1 available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| CID 755673 | Selective protein kinase D inhibitor | [521937-07-5] | About this table
10/21 Novoseek chemical compound relationships for PRKD1 gene (see all 21
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| pkcs |
86.62 |
19 |
8538623 (2), 8078925 (2), 7851400 (2), 14645664 (2) (see all 12) |
| syntide-2 |
86.01 |
6 |
8538623 (2), 10748111 (1), 8078925 (1), 11008129 (1) |
| go 6983 |
76.01 |
3 |
14573624 (1), 15755722 (1) |
| threonine |
75.05 |
55 |
10998417 (1), 15190080 (1), 15975900 (1), 16006559 (1) (see all 38) |
| phorbol 12,13-dibutyrate |
69.02 |
21 |
9973202 (3), 10636921 (2), 14645664 (2), 10998417 (1) (see all 6) |
| phorbol |
68.41 |
12 |
10498194 (2), 11008129 (2), 10600772 (1), 16313517 (1) (see all 7) |
| bryostatin 1 |
48.64 |
6 |
18765827 (2), 10622742 (1), 9765302 (1) |
| bisindolylmaleimide |
33.53 |
2 |
9990296 (1) |
| ceramide |
31.63 |
4 |
17591919 (2), 9799101 (1) |
| tyrosine |
27.50 |
14 |
12637538 (4), 17804414 (2), 10748111 (1), 15378608 (1) (see all 9) |
About this table
|
Transcripts for PRKD1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002742
Sigma-Aldrich siRNA and siRNA Panels for PRKD1  Sigma-Aldrich shRNA Panels and shRNA for PRKD1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002742 REFSEQ mRNAs for PRKD1 gene: NM_002742.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002742               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002742                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002742                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002742  Additional cDNA sequence: AK314170.1 BC029966.1 X75756.1 7 DOTS entries: DT.112749 DT.91750649 DT.102826234 DT.75187819 DT.120768136 DT.99972123 DT.102826237 1 AceView cDNA sequence:AW293339
highest scoring ESTs for PRKD1:X75756 AI141181 AI198975 BI825769 AA095689 AA150207 AA152269 AA234607 AA236577 AA599429 Unigene Cluster for PRKD1: Protein kinase D1 Hs.508999 [show with all ESTs]Unigene Representative Sequence: X75756
GeneLoc Exon Structure
4 Ensembl transcripts including schematic representations: ENST00000331968
ENST00000389984
ENST00000389985
ENST00000396674
|
Expression for PRKD1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| PRKD1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for PRKD1
1 / 2 / 3 3 probe-sets matching PRKD1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AACAAGTTTT
SOURCE GeneReport for Unigene cluster: Hs.508999
Expression variation in blood from EXPOLDB for PRKD1 |
Orthologs for PRKD1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for PRKD1 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for PRKD1
ENSEMBL Gene Tree for PRKD1 | Paralogs for PRKD1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for PRKD1 gene
- PRKD22 PRKD32 CHEK22
|
SNPs/Variants for PRKD1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for PRKD1 (up to first 250kb)
|
Disorders & Mutations for PRKD1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 605435
10/11 Novoseek disease relationships for PRKD1 gene (see all 11
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| arpkd |
42.98 |
1 |
14872199 (1) |
| adpkd |
39.60 |
1 |
15001556 (1) |
| prostate cancer |
28.62 |
19 |
12859948 (5), 17979146 (2), 15695390 (1), 19141652 (1) (see all 6) |
| necrosis |
0.00 |
2 |
14604983 (1), 15755722 (1) |
| psoriasis |
0.00 |
1 |
16536798 (1) |
| cancer |
0.00 |
7 |
11008129 (2), 12646240 (2), 18765827 (1) |
| carcinoma |
0.00 |
2 |
9935238 (1), 7851400 (1) |
| cysts |
0.00 |
2 |
14872199 (1), 11245774 (1) |
| tumors |
0.00 |
5 |
16083495 (1), 14604983 (1), 11978539 (1), 15755722 (1) |
| adenocarcinoma |
0.00 |
2 |
11912133 (1) |
About this table
|
Medical News for PRKD1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for PRKD1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/218 PubMed articles for PRKD1 gene (see all 218
):- PKCmu is a novel, atypical member of the protein kinase C family. (PubMed id 8119958)1, 2, 3, 4 Johannes F.-J.... Pfizenmaier K. (1994)
- Tyrosine phosphorylation of protein kinase D in the pleckstrin homology domain leads to activation. (PubMed id 12637538)1, 3, 4 Storz P.... Toker A. (2003)
- A novel tyrosine phosphorylation site in protein kinase D contributes to oxidative stress-mediated activation. (PubMed id 17804414)1, 3, 4 Doppler H. and Storz P. (2007)
- Centaurin-alpha(1) associates with and is phosphorylated by isoforms of protein kinase C. (PubMed id 12893243)3, 4 Zemlickova E.... Aitken A. (2003)
- Assignment of protein kinase C mu (PRKCM) to human chromosome band 14q11 with somatic cell hybrids and radiation hybrids. (PubMed id 10965134)2, 3 Owczarek C.M....Hertzog P.J. (2000)
- Protein kinase D specifically mediates apoptosis signal-regulating kinase 1-JNK signaling induced by H2O2 but not tumor necrosis factor. (PubMed id 15755722)1, 3 Zhang W....Min W. (2005)
- PKD: a new protein kinase C-dependent pathway in platelets. (PubMed id 12393506)1, 3 Stafford M.J....Pears C.J. (2003)
- Protein kinase D complexes with C-Jun N-terminal kinase via activation loop phosphorylation and phosphorylates the C-Jun N-terminus. (PubMed id 11948398)1, 3 Hurd C....Rozengurt E. (2002)
- Protein kinase D interaction with TLR5 is required for inflammatory signaling in response to bacterial flagellin. (PubMed id 17442957)1, 3 Ivison S.M....Steiner T.S. (2007)
- The role of protein kinase D in neurotensin secretion mediated by protein kinase C-alpha/-delta and Rho/Rho kinase. (PubMed id 15123666)1, 3 Li J....Evers B.M. (2004)
|
Search for PRKD1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing PRKD1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing PRKD1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing PRKD1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for PRKD1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for PRKD1:

 | |
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|
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| | | | Tocris compounds for PRKD1 |
|
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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