PRKCD Gene
protein-coding GIFtS : 71
GCID: GC03 P053190
protein kinase C, delta
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Aliasesfor PRKCD gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Protein Kinase C, Delta 1 2 PKCD2 Tyrosine-Protein Kinase PRKCD2 3 Protein Kinase C Delta Type2 NPKC-Delta1 Protein Kinase C Delta VIII2 EC 2.7.11.133 8 EC 2.7.10.23 MAY12 EC 2.7.118
Export aliases for PRKCD gene to outside databases Previous GC identifers: GC03P052287 GC03P052446 GC03P053050 GC03P053152 GC03P053170
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Summariesfor PRKCD gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for PRKCD : Protein kinase C (PKC) is a family of serine- and threonine-specific protein kinases that can be activated by calcium and the second messenger diacylglycerol. PKC family members phosphorylate a wide variety of protein targets and are known to be involved in diverse cellular signaling pathways. PKC family members also serve as major receptors for phorbol esters, a class of tumor promoters. Each member of the PKC family has a specific expression profile and is believed to play distinct roles in cells. The protein encoded by this gene is one of the PKC family members. Studies both in human and mice demonstrate that this kinase is involved in B cell signaling and in the regulation of growth, apoptosis, and differentiation of a variety of cell types. Alternatively spliced transcript variants encoding the same protein have been observed. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: KPCD_HUMAN, Q05655 Function : Calcium-independent, phospholipid- and diacylglycerol (DAG)-dependent serine/threonine-protein kinase thatplays contrasting roles in cell death and cell survival by functioning as a pro-apoptotic protein during DNA damage-induced apoptosis, but acting as an anti-apoptotic protein during cytokine receptor-initiated cell death, is involved in tumor suppression as well as survival of several cancers, is required for oxygen radical production by NADPH oxidase and acts as positive or negative regulator in platelet functional responses. Upon DNA damage, activates the promoter of the death-promoting transcription factor BCLAF1/Btf to trigger BCLAF1-mediated p53/TP53 gene transcription and apoptosis. In response to oxidative stress, interact with and activate CHUK/IKKA in the nucleus, causing the phosphorylation of p53/TP53. In the case of ER stress or DNA damage-induced apoptosis, can form a complex with the tyrosine-protein kinase ABL1 which trigger apoptosis independently of p53/TP53. In cytosol can trigger apoptosis by activating MAPK11 or MAPK14, inhibiting AKT1 and decreasing the level of X-linked inhibitor of apoptosis protein (XIAP), whereas in nucleus induces apoptosis via the activation of MAPK8 or MAPK9. Upon ionizing radiation treatment, is required for the activation of the apoptosis regulators BAX and BAK, which trigger the mitochondrial cell death pathway. Can phosphorylate MCL1 and target it for degradation which is sufficient to trigger for BAX activation and apoptosis. Is required for the control of cell cycle progression both at G1/S and G2/M phases. Mediates phorbol 12-myristate 13-acetate (PMA)-induced inhibition of cell cycle progression at G1/S phase by up-regulating the CDK inhibitor CDKN1A/p21 and inhibiting the cyclin CCNA2 promoter activity. In response to UV irradiation can phosphorylate CDK1, which is important for the G2/M DNA damage checkpoint activation. Can protect glioma cells from the apoptosis induced by TNFSF10/TRAIL, probably by inducing increased phosphorylation and subsequent activation of AKT1. Is highly expressed in a number of cancer cells and promotes cell survival and resistance against chemotherapeutic drugs by inducing cyclin D1 (CCND1) and hyperphosphorylation of RB1, and via several pro-survival pathways, including NF-kappa-B, AKT1 and MAPK1/3 (ERK1/2). Can also act as tumor suppressor upon mitogenic stimulation with PMA or TPA. In N-formyl-methionyl-leucyl-phenylalanine (fMLP)-treated cells, is required for NCF1 (p47-phox) phosphorylation and activation of NADPH oxidase activity, and regulates TNF-elicited superoxide anion production in neutrophils, by direct phosphorylation and activation of NCF1 or indirectly through MAPK1/3 (ERK1/2) signaling pathways. May also play a role in the regulation of NADPH oxidase activity in eosinophil after stimulation with IL5, leukotriene B4 or PMA. In collagen-induced platelet aggregation, acts a negative regulator of filopodia formation and actin polymerization by interacting with and negatively regulating VASP phosphorylation. Downstream of PAR1, PAR4 and CD36/GP4 receptors, regulates differentially platelet dense granule secretion; acts as a positive regulator in PAR-mediated granule secretion, whereas it negatively regulates CD36/GP4-mediated granule release. Phosphorylates MUC1 in the C-terminal and regulates the interaction between MUC1 and beta-catenin. The catalytic subunit phosphorylates 14-3-3 proteins (YWHAB, YWHAZ and YWHAH) in a sphingosine-dependent fashion (By similarity) summary
for PRKCD : Protein kinase C (PKC) refers to a family of serine/threonine protein kinases grouped by their activationmechanism. Classical or conventional PKCs (cPKC alpha-, betaI- , betaII- and gamma-) are activated byphosphatidylserine in a calcium dependent manner and can bind diacylglycerol (DAG). The Ca2+ insensitivenovel PKCs (nPKCs epsilon-, delta-, theta- and eta- isotypes) are also activated by DAG andphosphatidylserine. The atypical PKCs (aPKCs iota- and zeta-) are insensitive to Ca2+, DAG and phorbolesters. All PKCs isoforms consist of a highly conserved catalytic domain connected to a regulatory domainvia a hinge region. The physiological roles of PKCs are vast. This due to PKC phosphorylation and activationof multiple target proteins, which are involved in signal transduction pathways including, but not limitedto, receptor desensitization, modulation of membrane structure events, regulation of transcription,regulation of cell growth, immune responses, and in learning and memory. Gene Wiki entry for PRKCD
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Genomic Viewsfor PRKCD gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000003.11 NC_018914.1 NT_022517.18 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the PRKCD gene promoter: p53 AP-1 STAT3 Other transcription factors Search SABiosciences Chromatin IP Primers for PRKCD Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat PRKCD
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 3p21.31 Ensembl cytogenetic band: 3p21.1 HGNC cytogenetic band: 3p21.31 PRKCD Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03P053190: view genomic region
(about GC identifiers )
Start:
53,190,025 bp from pter
End:
53,226,733 bp from pter
Size:
36,709 bases
Orientation:
plus strand
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Proteinsfor PRKCD gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: KPCD_HUMAN, Q05655 (See
protein sequence )Recommended Name: Protein kinase C delta type Size : 676 amino acids; 77505 Da
Subunit : Interacts with PDPK1 (via N-terminus region), RAD9A, CDCP1, MUC1 and VASP
Subcellular location : Cytoplasm. Cytoplasm, perinuclear region. Nucleus. Endoplasmic reticulum. Mitochondrion. Cellmembrane; Peripheral membrane protein
2 PDB 3D structures from and Proteopedia for PRKCD :1YRK (3D)
  2YUU (3D)
 
Secondary accessions : B0KZ81 B2R834 Q15144 Q86XJ6Alternative splicing : 2 isoforms : Q05655-1 Q05655-2 (Antiapoptotic isoform, resistant to caspase-3 cleavage)Explore the universe of human proteins at neXtProt for PRKCD: NX_Q05655 Post-translational modifications:
Autophosphorylated and/or phosphorylated at Thr-507, within the activation loop; phosphorylation at Thr-507 is not a prerequisite for enzymatic activity. Autophosphorylated at Ser-299, Ser-302 and Ser-304. Upon TNFSF10/TRAIL treatment, phosphorylated at Tyr-155; phosphorylation is required for its translocation to the endoplasmic reticulum and cleavage by caspase-3. Phosphorylated at Tyr-313, Tyr-334 and Tyr-567; phosphorylation of Tyr-313 and Tyr-567 following thrombin stimulation potentiates its kinase activity. Phosphorylated by protein kinase PDPK1; phosphorylation is inhibited by the apoptotic C-terminus cleavage product of PKN21
Proteolytically cleaved into a catalytic subunit and a regulatory subunit by caspase-3 during apoptosis which results in kinase activation (By similarity)1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q05655 4/24 DME Specific Peptides for PRKCD (Q05655 ) (see all 24 )PRKCD Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_006245.2 NP_997704.1 ENSEMBL proteins: ENSP00000419726 ENSP00000378217 ENSP00000331602 ENSP00000418106 ENSP00000419629 Reactome Protein details: Q05655 Human Recombinant Protein Products: Gene Ontology (GO): 5/11 cellular component terms (GO ID links to tree view) (see all 11 ): About this table
PRKCD for ontologies About GeneDecksing PRKCD Antibody Products: Assay Products for PRKCD:
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Protein
Domains / Familiesfor PRKCD gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
PRKCD for domains About GeneDecksing 5/12 InterPro domains/families (see all 12 ):
Graphical View of Domain Structure for InterPro Entry Q05655 ProtoNet protein and cluster: Q05655
3 Blocks protein families : IPB000008 C2 domain IPB000961 Protein kinase C-terminal domain IPB002219 Protein kinase C UniProtKB/Swiss-Prot: KPCD_HUMAN, Q05655 Domain : The C1 domain, containing the phorbol ester/DAG-type region 1 (C1A) and 2 (C1B), is the diacylglycerol sensorDomain : The C2 domain is a non-calcium binding domain. It binds proteins containing phosphotyrosine in asequence-specific manner Similarity : Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamilySimilarity : Contains 1 AGC-kinase C-terminal domainSimilarity : Contains 1 C2 domainSimilarity : Contains 2 phorbol-ester/DAG-type zinc fingersSimilarity : Contains 1 protein kinase domain
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Functionfor PRKCD gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: KPCD_HUMAN, Q05655 Function : Calcium-independent, phospholipid- and diacylglycerol (DAG)-dependent serine/threonine-protein kinase thatplays contrasting roles in cell death and cell survival by functioning as a pro-apoptotic protein during DNA damage-induced apoptosis, but acting as an anti-apoptotic protein during cytokine receptor-initiated cell death, is involved in tumor suppression as well as survival of several cancers, is required for oxygen radical production by NADPH oxidase and acts as positive or negative regulator in platelet functional responses. Upon DNA damage, activates the promoter of the death-promoting transcription factor BCLAF1/Btf to trigger BCLAF1-mediated p53/TP53 gene transcription and apoptosis. In response to oxidative stress, interact with and activate CHUK/IKKA in the nucleus, causing the phosphorylation of p53/TP53. In the case of ER stress or DNA damage-induced apoptosis, can form a complex with the tyrosine-protein kinase ABL1 which trigger apoptosis independently of p53/TP53. In cytosol can trigger apoptosis by activating MAPK11 or MAPK14, inhibiting AKT1 and decreasing the level of X-linked inhibitor of apoptosis protein (XIAP), whereas in nucleus induces apoptosis via the activation of MAPK8 or MAPK9. Upon ionizing radiation treatment, is required for the activation of the apoptosis regulators BAX and BAK, which trigger the mitochondrial cell death pathway. Can phosphorylate MCL1 and target it for degradation which is sufficient to trigger for BAX activation and apoptosis. Is required for the control of cell cycle progression both at G1/S and G2/M phases. Mediates phorbol 12-myristate 13-acetate (PMA)-induced inhibition of cell cycle progression at G1/S phase by up-regulating the CDK inhibitor CDKN1A/p21 and inhibiting the cyclin CCNA2 promoter activity. In response to UV irradiation can phosphorylate CDK1, which is important for the G2/M DNA damage checkpoint activation. Can protect glioma cells from the apoptosis induced by TNFSF10/TRAIL, probably by inducing increased phosphorylation and subsequent activation of AKT1. Is highly expressed in a number of cancer cells and promotes cell survival and resistance against chemotherapeutic drugs by inducing cyclin D1 (CCND1) and hyperphosphorylation of RB1, and via several pro-survival pathways, including NF-kappa-B, AKT1 and MAPK1/3 (ERK1/2). Can also act as tumor suppressor upon mitogenic stimulation with PMA or TPA. In N-formyl-methionyl-leucyl-phenylalanine (fMLP)-treated cells, is required for NCF1 (p47-phox) phosphorylation and activation of NADPH oxidase activity, and regulates TNF-elicited superoxide anion production in neutrophils, by direct phosphorylation and activation of NCF1 or indirectly through MAPK1/3 (ERK1/2) signaling pathways. May also play a role in the regulation of NADPH oxidase activity in eosinophil after stimulation with IL5, leukotriene B4 or PMA. In collagen-induced platelet aggregation, acts a negative regulator of filopodia formation and actin polymerization by interacting with and negatively regulating VASP phosphorylation. Downstream of PAR1, PAR4 and CD36/GP4 receptors, regulates differentially platelet dense granule secretion; acts as a positive regulator in PAR-mediated granule secretion, whereas it negatively regulates CD36/GP4-mediated granule release. Phosphorylates MUC1 in the C-terminal and regulates the interaction between MUC1 and beta-catenin. The catalytic subunit phosphorylates 14-3-3 proteins (YWHAB, YWHAZ and YWHAH) in a sphingosine-dependent fashion (By similarity) Catalytic activity : ATP + a protein = ADP + a phosphoproteinCatalytic activity : ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphateEnzyme regulation : Novel PKCs (PRKCD, PRKCE, PRKCH and PRKCQ) are calcium-insensitive, but activated by diacylglycerol(DAG) and phosphatidylserine. Three specific sites; Thr-507 (activation loop of the kinase domain), Ser-645 (turn motif) and Ser-664 (hydrophobic region), need to be phosphorylated for its full activation. Activated by caspase-3 (CASP3) cleavage during apoptosis. After cleavage, the pseudosubstrate motif in the regulatory subunit is released from the substrate recognition site of the catalytic subunit, which enables PRKCD to become constitutively activated. The catalytic subunit which displays properties of a sphingosine-dependent protein kinase is activated by D-erythro-sphingosine (Sph) or N,N-dimethyl-D-erythrosphingosine (DMS) or N,N,N-trimethyl-D-erythrosphingosine (TMS), but not by ceramide or Sph-1-P and is strongly inhibited by phosphatidylserine (By similarity)
Genatlas biochemistry entry for PRKCD : protein kinase C,delta polypeptide,involved in proheparin-binding EGF-like growth factor (HBEGF) ectodomain shedding upon TPA stimulation Enzyme Numbers (IUBMB): EC 2.7.11.13 1 2 EC 2.7.11 2 EC 2.7.10.2 1 Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PRKCD (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PRKCD (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): PRKCD (NM_006254 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PRKCD Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PRKCD
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PRKCD
Gene Ontology (GO): 5/13 molecular function terms (GO ID links to tree view) (see all 13 ): About this table
PRKCD for ontologies About GeneDecksing 6 GenomeRNAi human phenotypes for PRKCD :Animal Models: Mouse knock-outs for PRKCD: Prkcd tm1Kin Prkcd tm1Msg 13 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Prkcd) :
PRKCD for phenotypes About GeneDecksing
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Pathways & Interactionsfor PRKCD gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/120 super-pathways (see all 120 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Signaling by FGFR 2 ErbB4 Pathway 3 DAG and IP3 signaling 4 CCR3 Pathway in Eosinophils 5 Translation_Translation regulation by Alpha-1 adrenergic receptors
Pathway sources See GeneCards unified pathways Show all pathways 5/22 EMD Millipore Pathways for PRKCD (see all 22 )2 R&D Systems Pathways for PRKCD 5/84 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for PRKCD (see all 84 )1
Cell Signaling Technology (CST) Pathway for PRKCD 2 Tocris Bioscience Pathways for PRKCD 5/22 GeneGo (Thomson Reuters) Pathways for PRKCD (see all 22 )5/37 BioSystems Pathways for PRKCD (see all 37 ) 5/48
Reactome Pathways for PRKCD (see all 48 )2 PharmGKB Pathways for PRKCD 5/8
Kegg Pathways (Kegg details for PRKCD) (see all 8 ):
PRKCD for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for PRKCD STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/248 Interacting proteins for PRKCD (Q05655 1 , 2 , 3 ENSP00000331602 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 248 )Interactant Interaction Details GeneCard External ID(s) CDCP1 Q9H5V8 2 , 3 , ENSP00000296129 4 MINT-62341 MINT-62334 MINT-62336 MINT-62333 MINT-62332 MINT-62339 I2D:
score=3 STRING: ENSP00000296129 NCF1 P14598 2 , 3 , ENSP00000289473 4 MINT-3973536 I2D:
score=2 STRING: ENSP00000289473 PPM1A P35813 2 , 3 , ENSP00000327255 4 MINT-8387176 I2D:
score=2 STRING: ENSP00000327255 ABL1 P00519 2 , 3 , ENSP00000361423 4 MINT-1955124 I2D:
score=1 STRING: ENSP00000361423 SRC P12931 2 , 3 , ENSP00000350941 4 MINT-62340 MINT-62338 I2D:
score=3 STRING: ENSP00000350941
About this table Gene Ontology (GO): 5/62 biological process terms (GO ID links to tree view) (see all 62 ): About this table
PRKCD for ontologies About GeneDecksing
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Drugs & Compoundsfor PRKCD gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
PRKCD for compounds About GeneDecksing
Enzo Life Sciences drugs & compounds for PRKCD
Compounds for PRKCD available from Tocris Bioscience About this table Compound Action
CAS
# Phorbol 12,13-dibutyrate Protein kinase C activator [37558-16-0] Go 6976 Potent protein kinase C inhibitor; selective for alpha and beta isozymes [136194-77-9] GF 109203X Protein kinase C inhibitor [133052-90-1] Rottlerin Reported PKCdelta inhibitor [82-08-6] PKC (19-36) Pseudosubstrate peptide; inhibitor of PKC [113731-96-7]
10/846 HMDB Compounds for PRKCD (see all 846 ) About this table 1 DrugBank Compound for PRKCD About this table 10/44 Novoseek chemical compound relationships for PRKCD gene (see all 44 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
rottlerin
96.1
34
17133362 (2), 17927688 (2), 10618482 (1), 16698440 (1) (see all 29 )
n-benzyladriamycin-14-valerate
82.7
1
11297449 (1)
nsc-606985
82.6
2
19747914 (1), 19322780 (1)
pkcs
82.5
2
20236250 (1), 16424000 (1)
bryostatin 1
70.4
6
10194341 (2), 8077702 (1), 10626804 (1), 14725904 (1)
phorbol
61.3
5
10713064 (1), 11595128 (1), 16183650 (1), 10818086 (1) (see all 5 )
tyrosine
60.6
36
7568083 (4), 10698304 (2), 15811957 (1), 11381116 (1) (see all 29 )
12-o-tetradecanoylphorbol 13-acetate
55.1
6
7830075 (2), 17964626 (1)
phosphatidylinositol
48.6
5
11549843 (1), 8663229 (1), 11912175 (1), 19074768 (1) (see all 5 )
serine
48.5
4
11438522 (1), 9857052 (1), 9305920 (1), 16424000 (1)
Search CenterWatch for drugs/clinical trials and news about PRKCD / KPCD
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Transcriptsfor PRKCD gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for PRKCD gene (2 alternative transcripts): NM_006254.3 NM_212539.1 Unigene Cluster for PRKCD:
Protein kinase C, delta Hs.155342 [show with all ESTs ] Unigene Representative Sequence: NM_006254 6 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000478843 ENST00000394729 (uc003dgl.3 uc003dgm.3 ) ENST00000330452 (uc010hmt.1 )ENST00000477794 ENST00000487897 ENST00000464818 (uc003dgn.2 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PRKCD (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PRKCD (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): PRKCD (NM_006254 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PRKCD Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PRKCD
Additional cDNA sequence: AK130150.1 AK294272.1 AK313216.1 BC043350.1 BC127261.1 D10495.1 DQ516383.1 L07860.1 L07861.1 Z22521.1
8 DOTS entries : DT.447562 DT.92327244
DT.100008116 DT.95092309 DT.100026851 DT.120850705 DT.91834194 DT.91713047 24/254 AceView cDNA sequences (see all 254 ):
BE889730 BF446364 BQ086286 BM914479 BP336675 CK822956 BM967192 BM755813 CF141981 AI126073 BQ712651 NM_006254 BX378948 BM975717 CR596063 NM_212539 BF445845 BQ706214 CD518507 AI312882 BF939213 BF446886 AI127149 BI858343 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for PRKCD About this scheme ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b ^ 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17 ^ 18 ^ 19 ^ 20a · 20b SP1 :       -             -                     -               SP2 :     -   -             -                     -               SP3 :                   -                                   SP4 :                                                     SP5 :                                                    
ECgene alternative splicing isoforms for PRKCD
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Expression for PRKCD gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section PRKCD expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GGGGACTGGT
About this image PRKCD expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Heart Endocardium Cushion Mesenchymal Cells Endocardium Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See PRKCD Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for PRKCD SOURCE GeneReport for Unigene cluster: Hs.155342 SABiosciences Expression via Pathway-Focused PCR Arrays including PRKCD : Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for PRKCDBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat PRKCD QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat PRKCD QIAGEN QuantiFast Probe-based Assays in human , mouse , rat PRKCD In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PRKCD
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Orthologsfor PRKCD gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for PRKCD gene from 6/21 species (see all 21 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
PRKCD1
protein kinase C, delta
76.88(n) 85.57(a)
 
415905 NM_001006133.1 NP_001006133.1
lizard (Anolis carolinensis)
Reptilia
PRKCD6
--
83(a)
1 ↔ 1
2(155711992-155751256)
African clawed frog (Xenopus laevis)
Amphibia
AB109739.12
--
79.63(n)
 
AB109739.1
zebrafish (Danio rerio)
Actinopterygii
wufb09d102
Danio rerio mRNA similar to protein kinase C, delta more
75.7(n)
 
BC049327.1
fruit fly (Drosophila melanogaster)
Insecta
Pkc&dgr;3 Pkcdelta1
protein amino acid phosphorylation protein serine/threonine more 3 Protein kinase C delta1
55(a) 3 60.22(n) 1 57.47(a) 1
 
32191 1 NM_078616.3 1 NP_511171.3 1
worm (Caenorhabditis elegans)
Secernentea
tpa-11 , 3
protein kinase C3 Protein TPA-11
48(a) (best of 3)3 55.19(n) 1 51.17(a) 1
 
IV(92052-110151)3 176825 1 NM_067459.2 1 NP_499860.1 1
ENSEMBL Gene Tree for PRKCD (if available)TreeFam Gene Tree for PRKCD (if available)
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Paralogsfor PRKCD gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for PRKCD gene PRKCQ 2 PRKCH 2 PRKCB 2 PRKCI 2 PRKCE 2 PKN1 2 PRKCA 2 PRKCZ 2 PKN3 2 PRKCG 2 PKN2 2 15 SIMAP similar genes for PRKCD using alignment to 4 protein entries: KPCD_HUMAN (see all proteins ):PRKCQ PKN2 PRKCH AKT2 AKT3 PKN3 PRKCE PRKCI AKT1 PKN1 PRKD1 PRKCZ PRKCA PRKCG PRKCB
PRKCD for paralogs About GeneDecksing
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Genomic Variantsfor PRKCD gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 3 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for PRKCD (53190025 - 53226733 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for PRKCD 1 CNV : 51119
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing PRKCD
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Disorders
/ Diseasesfor PRKCD gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
PRKCD for disorders About GeneDecksing
OMIM gene information: 176977
OMIM disorders : --20/65 diseases for PRKCD (see all 65 ): About MalaCards pneumonic plague abdominal aortic aneurysm aortic aneurysm myeloid leukemia acute myeloid leukemia plague kaposi's sarcoma diabetic retinopathy brain ischemia parkinson's disease renal cell carcinoma squamous cell carcinoma pituitary tumor pulmonary fibrosis ischemia colon cancer hepatitis c adenocarcinoma carcinoma thymoma 10/20 Novoseek disease relationships for PRKCD gene (see all 20 ) About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
glioma
27.2
6
19965895 (1), 8848016 (1), 15135084 (1), 19169273 (1) (see all 6 )
tumors
22.4
19
11470753 (2), 8999887 (1), 15386430 (1), 18653803 (1) (see all 16 )
colon cancer
15.4
3
15386430 (1), 15494216 (1), 18807195 (1)
mammary tumor
6.55
1
10597283 (1)
parkinson disease
4.59
3
15961393 (1), 18945348 (1), 19633700 (1)
breast cancer
1.43
4
11595128 (1), 10221776 (1), 16617167 (1), 19903772 (1)
adenocarcinoma lung
0.901
1
12525155 (1)
gastric carcinoma
0.758
1
16598791 (1)
carcinoma squamous cell
0
4
20093486 (2), 16158048 (1), 16424000 (1)
ischemia
0
2
15167677 (1), 16111715 (1)
Human Genome Epidemiology (HuGE) Navigator: PRKCD (6 documents) Export disorders for PRKCD gene to outside databases
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Publicationsfor PRKCD gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for PRKCD gene, integrated from 9 sources (see all 731 ): (articles sorted by number of sources associating them with PRKCD) Utopia : connect your pdf to the dynamic world of online information
Assignment of the protein kinase C delta polypeptide gene (PRKCD) to human chromosome 3 and mouse chromosome 14. (PubMed id 8188219) 1 , 3, 9 Huppi K....Mischak H. (1994) Novel phosphorylation site markers of protein kinase C delta activation. (PubMed id 17603046) 1 , 2 , 9 Durgan J....Parker P.J. (2007) Protein kinase C delta regulates function of the DF3/MUC1 carcinoma antigen in beta-catenin signaling. (PubMed id 11877440) 1 , 2 , 9 Ren J.... Kufe D. (2002) Regulation of TNF-induced oxygen radical production i n human neutrophils: role of delta-PKC. (PubMed id 19801500) 1 , 2 Kilpatrick L.E....Korchak H.M. (2010) Identification of a Novel Antiapoptotic Human Protein Kinase C delta Isoform, PKCdeltaVIII in NT2 Cells. (PubMed id 18092819) 1 , 2 Jiang K.... Patel N.A. (2008) The localization of protein kinase Cdelta in different subcellular sites affects its proapoptotic and antiapoptotic functions and the activation of distinct downstream signaling pathways. (PubMed id 17579121) 1 , 2 Gomel R....Brodie C. (2007) The C2 domain of PKCdelta is a phosphotyrosine binding domain. (PubMed id 15851033) 1 , 2 Benes C.H.... Soltoff S.P. (2005) Roles of tyrosine phosphorylation and cleavage of protein kinase Cdelta in its protective effect against tumor necrosis factor-related apoptosis inducing ligand-induced apoptosis. (PubMed id 15774464) 1 , 2 Okhrimenko H....Brodie C. (2005) Protein kinase Cdelta is responsible for constitutive and DNA damage- induced phosphorylation of Rad9. (PubMed id 12628935) 1 , 2 Yoshida K.... Kufe D. (2003) Regulation of both PDK1 and the phosphorylation of PKC-zeta and -delta by a C-terminal PRK2 fragment. (PubMed id 11781095) 1 , 2 Hodgkinson C.P. and Sale G.J. (2002)
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External Searches for PRKCD gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing PRKCD gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing PRKCD gene
(According to HUGE )
About This Section --
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Specialized Databases showing PRKCD gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for PRKCD gene: Search GeneIP for patents involving PRKCD GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor PRKCD gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for PRKCD OriGene shRNA RFP for PRKCD OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for PRKCD OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for PRKCD OriGene Protein Over-expression Lysate for PRKCD Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for PRKCD OriGene 3'-UTR Clone for PRKCD OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PRKCD OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PRKCD Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for PRKCD OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for PRKCD OriGene Custom Protein Services for PRKCD OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat PRKCD QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing PRKCD QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat PRKCD QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat PRKCD QIAGEN QuantiFast Probe-based Assays in human , mouse , rat PRKCD QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat PRKCD
Antibodies & Assays for PRKCD   (PKCD)
Tocris compounds for PRKCD
Recombinant Protein for PRKCD
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PRKCD
ThermoFisher Antibodies for PRKCD
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PRKCD
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