PRKCB Gene
protein-coding GIFtS : 68
GCID: GC16 P023847
protein kinase C, beta (Previous names: protein kinase C, beta 1 ) (Previous symbols: PRKCB2, PKCB, PRKCB1 )
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Aliasesfor PRKCB gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Protein Kinase C, Beta 1 2 EC 2.7.11.133 8 PKCB1 2 3 5 Protein Kinase C, Beta 11 PRKCB11 2 3 5 Protein Kinase C Beta Type2 PRKCB21 2 Protein Kinase C, Beta 1 Polypeptide2 PKC-B2 3 EC 2.7.118 PKC-Beta1
Export aliases for PRKCB gene to outside databases Previous GC identifers: GC16P023755 GC16P021938
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Summariesfor PRKCB gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for PRKCB : Protein kinase C (PKC) is a family of serine- and threonine-specific protein kinases that can be activated by calcium and second messenger diacylglycerol. PKC family members phosphorylate a wide variety of protein targets and are known to be involved in diverse cellular signaling pathways. PKC family members also serve as major receptors for phorbol esters, a class of tumor promoters. Each member of the PKC family has a specific expression profile and is believed to play a distinct role in cells. The protein encoded by this gene is one of the PKC family members. This protein kinase has been reported to be involved in many different cellular functions, such as B cell activation, apoptosis induction, endothelial cell proliferation, and intestinal sugar absorption. Studies in mice also suggest that this kinase may also regulate neuronal functions and correlate fear-induced conflict behavior after stress. Alternatively spliced transcript variants encoding distinct isoforms have been reported. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: KPCB_HUMAN, P05771 Function : Calcium-activated, phospholipid- and diacylglycerol (DAG)-dependent serine/threonine-protein kinase involvedin various cellular processes such as regulation of the B-cell receptor (BCR) signalosome, oxidative stress-induced apoptosis, androgen receptor-dependent transcription regulation, insulin signaling and endothelial cells proliferation. Plays a key role in B-cell activation by regulating BCR-induced NF-kappa-B activation. Mediates the activation of the canonical NF-kappa-B pathway (NFKB1) by direct phosphorylation of CARD11/CARMA1 at 'Ser-559', 'Ser-644' and 'Ser-652'. Phosphorylation induces CARD11/CARMA1 association with lipid rafts and recruitment of the BCL10-MALT1 complex as well as MAP3K7/TAK1, which then activates IKK complex, resulting in nuclear translocation and activation of NFKB1. Plays a direct role in the negative feedback regulation of the BCR signaling, by down-modulating BTK function via direct phosphorylation of BTK at 'Ser-180', which results in the alteration of BTK plasma membrane localization and in turn inhibition of BTK activity. Involved in apoptosis following oxidative damage: in case of oxidative conditions, specifically phosphorylates 'Ser-36' of isoform p66Shc of SHC1, leading to mitochondrial accumulation of p66Shc, where p66Shc acts as a reactive oxygen species producer. Acts as a coactivator of androgen receptor (ANDR)-dependent transcription, by being recruited to ANDR target genes and specifically mediating phosphorylation of 'Thr-6' of histone H3 (H3T6ph), a specific tag for epigenetic transcriptional activation that prevents demethylation of histone H3 'Lys-4' (H3K4me) by LSD1/KDM1A. In insulin signaling, may function downstream of IRS1 in muscle cells and mediate insulin-dependent DNA synthesis through the RAF1-MAPK/ERK signaling cascade. May participate in the regulation of glucose transport in adipocytes by negatively modulating the insulin-stimulated translocation of the glucose transporter SLC2A4/GLUT4. Under high glucose in pancreatic beta-cells, is probably involved in the inhibition of the insulin gene transcription, via regulation of MYC expression. In endothelial cells, activation of PRKCB induces increased phosphorylation of RB1, increased VEGFA-induced cell proliferation, and inhibits PI3K/AKT-dependent nitric oxide synthase (NOS3/eNOS) regulation by insulin, which causes endothelial dysfunction. Also involved in triglyceride homeostasis (By similarity) Gene Wiki entry for PRKCB (PRKCB1)
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Genomic Viewsfor PRKCB gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000016.9 NC_018927.1 NT_010393.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the PRKCB gene promoter: AML1a Other transcription factors Search SABiosciences Chromatin IP Primers for PRKCB Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat PRKCB
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 16p11.2 Ensembl cytogenetic band: 16p12.2 HGNC cytogenetic band: 16p12 PRKCB Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16P023847: view genomic region
(about GC identifiers )
Start:
23,847,300 bp from pter
End:
24,231,932 bp from pter
Size:
384,633 bases
Orientation:
plus strand
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Proteinsfor PRKCB gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: KPCB_HUMAN, P05771 (See
protein sequence )Recommended Name: Protein kinase C beta type Size : 671 amino acids; 76869 Da
Cofactor : Binds 3 calcium ions per subunit. The ions are bound to the C2 domain (By similarity)
Subunit : Interacts with PDK1 (By similarity). Interacts in vitro with PRKCBP1. Interacts with PHLPP1 and PHLPP2; bothproteins mediate its dephosphorylation. Interacts with KDM1A/LSD1, PKN1 and ANDR
Subcellular location : Cytoplasm (By similarity). Nucleus. Membrane; Peripheral membrane protein (By similarity)
1 PDB 3D structure from and Proteopedia for PRKCB :2I0E (3D)
 
Secondary accessions : C5IFJ8 D3DWF5 O43744 P05127 Q15138 Q93060 Q9UE49 Q9UE50 Q9UEH8 Q9UJ30 Q9UJ33Alternative splicing : 2 isoforms : P05771-1 P05771-2 (Contains a phosphothreonine at position 641. Contains a phosphoserine at position 660)Explore the universe of human proteins at neXtProt for PRKCB: NX_P05771 Post-translational modifications:
Phosphorylation on Thr-500 within the activation loop renders it competent to autophosphorylate. Subsequent autophosphorylation of Thr-642 maintains catalytic competence, and autophosphorylation on Ser-661 appears to release the kinase into the cytosol. Autophosphorylation on other sites i.e. in the N-terminal and hinge regions have no effect on enzyme activity. Phosphorylation at Tyr-662 by SYK induces binding with GRB2 and contributes to the activation of MAPK/ERK signaling cascade (By similarity)1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_P05771 4/50 DME Specific Peptides for PRKCB (P05771 ) (see all 50 )PRKCB Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_002729.2 NP_997700.1 ENSEMBL proteins: ENSP00000318315 ENSP00000305355 ENSP00000454428 ENSP00000459227 ENSP00000457980 ENSP00000458564 Reactome Protein details: P05771 Human Recombinant Protein Products: Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view) : About this table
PRKCB for ontologies About GeneDecksing PRKCB Antibody Products: Assay Products for PRKCB:
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Protein
Domains / Familiesfor PRKCB gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
PRKCB for domains About GeneDecksing 5/14 InterPro domains/families (see all 14 ):
Graphical View of Domain Structure for InterPro Entry P05771 ProtoNet protein and cluster: P05771
3 Blocks protein families : IPB000008 C2 domain IPB000961 Protein kinase C-terminal domain IPB002219 Protein kinase C UniProtKB/Swiss-Prot: KPCB_HUMAN, P05771 Similarity : Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamilySimilarity : Contains 1 AGC-kinase C-terminal domainSimilarity : Contains 1 C2 domainSimilarity : Contains 2 phorbol-ester/DAG-type zinc fingersSimilarity : Contains 1 protein kinase domain
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Functionfor PRKCB gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: KPCB_HUMAN, P05771 Function : Calcium-activated, phospholipid- and diacylglycerol (DAG)-dependent serine/threonine-protein kinase involvedin various cellular processes such as regulation of the B-cell receptor (BCR) signalosome, oxidative stress-induced apoptosis, androgen receptor-dependent transcription regulation, insulin signaling and endothelial cells proliferation. Plays a key role in B-cell activation by regulating BCR-induced NF-kappa-B activation. Mediates the activation of the canonical NF-kappa-B pathway (NFKB1) by direct phosphorylation of CARD11/CARMA1 at 'Ser-559', 'Ser-644' and 'Ser-652'. Phosphorylation induces CARD11/CARMA1 association with lipid rafts and recruitment of the BCL10-MALT1 complex as well as MAP3K7/TAK1, which then activates IKK complex, resulting in nuclear translocation and activation of NFKB1. Plays a direct role in the negative feedback regulation of the BCR signaling, by down-modulating BTK function via direct phosphorylation of BTK at 'Ser-180', which results in the alteration of BTK plasma membrane localization and in turn inhibition of BTK activity. Involved in apoptosis following oxidative damage: in case of oxidative conditions, specifically phosphorylates 'Ser-36' of isoform p66Shc of SHC1, leading to mitochondrial accumulation of p66Shc, where p66Shc acts as a reactive oxygen species producer. Acts as a coactivator of androgen receptor (ANDR)-dependent transcription, by being recruited to ANDR target genes and specifically mediating phosphorylation of 'Thr-6' of histone H3 (H3T6ph), a specific tag for epigenetic transcriptional activation that prevents demethylation of histone H3 'Lys-4' (H3K4me) by LSD1/KDM1A. In insulin signaling, may function downstream of IRS1 in muscle cells and mediate insulin-dependent DNA synthesis through the RAF1-MAPK/ERK signaling cascade. May participate in the regulation of glucose transport in adipocytes by negatively modulating the insulin-stimulated translocation of the glucose transporter SLC2A4/GLUT4. Under high glucose in pancreatic beta-cells, is probably involved in the inhibition of the insulin gene transcription, via regulation of MYC expression. In endothelial cells, activation of PRKCB induces increased phosphorylation of RB1, increased VEGFA-induced cell proliferation, and inhibits PI3K/AKT-dependent nitric oxide synthase (NOS3/eNOS) regulation by insulin, which causes endothelial dysfunction. Also involved in triglyceride homeostasis (By similarity) Catalytic activity : ATP + a protein = ADP + a phosphoproteinEnzyme regulation : Classical (or conventional) PKCs (PRKCA, PRKCB and PRKCG) are activated by calcium anddiacylglycerol (DAG) in the presence of phosphatidylserine. Three specific sites; Thr-500 (activation loop of the kinase domain), Thr-642 (turn motif) and Ser-661 (hydrophobic region), need to be phosphorylated for its full activation. Specifically inhibited by enzastaurin (LY317615) Enzyme Numbers (IUBMB): EC 2.7.11.13 1 2 EC 2.7.11 2
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PRKCB (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PRKCB (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): PRKCB (NM_002738 ) Sino Biological Human cDNA Clone for PRKCB DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PRKCB Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PRKCB
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PRKCB
Gene Ontology (GO): 5/12 molecular function terms (GO ID links to tree view) (see all 12 ): About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003682 chromatin binding
IDA -- GO:0004674 protein serine/threonine kinase activity
TAS -- GO:0004697 protein kinase C activity
IEA -- GO:0005080 protein kinase C binding
IPI -- GO:0005246 calcium channel regulator activity
IEA --
PRKCB for ontologies About GeneDecksing 4 GenomeRNAi human phenotypes for PRKCB :Animal Models: 7 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Prkcb) :
PRKCB for phenotypes About GeneDecksing
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Pathways & Interactionsfor PRKCB gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/82 super-pathways (see all 82 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Wnt Signaling Pathway 2 Development VEGF signaling via VEGFR2 - generic cascades 3 Signaling by GPCR 4 Glutamate Binding, Activation of AMPA Receptors and Synaptic Plasticity 5 Transmission across Chemical Synapses
Pathway sources See GeneCards unified pathways Show all pathways 5/14 EMD Millipore Pathways for PRKCB (see all 14 )2 R&D Systems Pathways for PRKCB 1
Cell Signaling Technology (CST) Pathway for PRKCB 3 Tocris Bioscience Pathways for PRKCB 5/15 GeneGo (Thomson Reuters) Pathways for PRKCB (see all 15 )5/25 BioSystems Pathways for PRKCB (see all 25 ) 5/20
Reactome Pathways for PRKCB (see all 20 )4 PharmGKB Pathways for PRKCB 5/36
Kegg Pathways (Kegg details for PRKCB) (see all 36 ):
PRKCB for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for PRKCB STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/219 Interacting proteins for PRKCB (P05771 2 , 3 ENSP00000305355 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 219 )About this table Gene Ontology (GO): 5/23 biological process terms (GO ID links to tree view) (see all 23 ): About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0006351 transcription, DNA-dependent
IEA -- GO:0006357 regulation of transcription from RNA polymerase II promoter
IMP -- GO:0006468 protein phosphorylation
TAS 3755548 GO:0006816 calcium ion transport
IEA -- GO:0006874 cellular calcium ion homeostasis
IEA --
PRKCB for ontologies About GeneDecksing
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Drugs & Compoundsfor PRKCB gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
PRKCB for compounds About GeneDecksing
Enzo Life Sciences drugs & compounds for PRKCB
Compounds for PRKCB available from Tocris Bioscience About this table Compound Action
CAS
# CGP 53353 Selective inhibitor of PKCbetaII [145915-60-2] [Glu27]-PKC (19-36) Inactive control peptide for PKC (19-36) (Cat. No. 4058) [309247-49-2] Go 6976 Potent protein kinase C inhibitor; selective for alpha and beta isozymes [136194-77-9] GF 109203X Protein kinase C inhibitor [133052-90-1] PKC (19-36) Pseudosubstrate peptide; inhibitor of PKC [113731-96-7]
10/846 HMDB Compounds for PRKCB (see all 846 ) About this table 2 DrugBank Compounds for PRKCB About this table 10/65 Novoseek chemical compound relationships for PRKCB gene (see all 65 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
ruboxistaurin
95.7
34
16384948 (3), 16307493 (2), 19825373 (2), 16249561 (1) (see all 23 )
ly333531
94.2
23
12540629 (2), 15067074 (1), 10452527 (1), 11356718 (1) (see all 16 )
ly317615
91.8
10
19112601 (1), 18462865 (1), 14593497 (1), 17766700 (1) (see all 6 )
hispidin
81.8
4
16374459 (1), 16936115 (1), 16441551 (1), 12566375 (1)
pkcs
79.1
7
19112601 (1), 9117107 (1), 18783200 (1), 15591124 (1) (see all 6 )
go 6976
77.6
3
15591124 (1), 16441551 (1), 9497487 (1)
12-deoxyphorbol-13-phenylacetate-20-acetate
69.3
1
8308000 (1)
bisindolylmaleimide
68.6
4
10618482 (1), 14962104 (1)
gf 109203x
67.6
8
14578299 (1), 19077250 (1), 16285992 (1), 17901075 (1) (see all 5 )
phorbol
66.2
10
8308000 (2), 11707282 (1), 8694856 (1), 9413940 (1) (see all 9 )
Search CenterWatch for drugs/clinical trials and news about PRKCB / KPCB
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Transcriptsfor PRKCB gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for PRKCB gene (2 alternative transcripts): NM_002738.6 NM_212535.2 Unigene Cluster for PRKCB:
Protein kinase C, beta Hs.460355 [show with all ESTs ] Unigene Representative Sequence: NM_002738 10 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000321728 (uc002dmd.3 ) ENST00000303531 (uc002dme.3 ) ENST00000498058 ENST00000498739 ENST00000486868 ENST00000482000 ENST00000472066 ENST00000463752 ENST00000487674 ENST00000466124 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PRKCB (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PRKCB (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): PRKCB (NM_002738 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PRKCB Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PRKCB
Additional cDNA sequence: AJ002788.1 AK057555.1 AK123381.1 AL833252.1 BC036472.1 BC045175.2 M13975.1 X06318.1 X07109.1
13 DOTS entries : DT.215913 DT.215912
DT.102834600 DT.120707986 DT.75186984 DT.120707950 DT.120707913 DT.95289505 DT.86846418 DT.92325932 DT.97801822 DT.120708022 DT.95314865 24/313 AceView cDNA sequences (see all 313 ):
AW002912 Z45874 NM_212535 AW575552 AA262174 AW373276 Z42558 F05187 BM931124 BU730067 N50566 F06702 AA989561 BP367288 BU733787 F02882 BE676169 BX493287 AW608634 AI436426 AV728862 AI381600 AA810597 AW968002 GeneLoc Exon Structure
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Expression for PRKCB gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section PRKCB expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image PRKCB expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See PRKCB Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for PRKCB SOURCE GeneReport for Unigene cluster: Hs.460355 SABiosciences Expression via Pathway-Focused PCR Arrays including PRKCB (see all 12 ): Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for PRKCBBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat PRKCB QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat PRKCB QIAGEN QuantiFast Probe-based Assays in human , mouse , rat PRKCB In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PRKCB
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Orthologsfor PRKCB gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for PRKCB gene from 5/22 species (see all 22 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
PRKCB1
protein kinase C, beta
84.01(n) 95.27(a)
 
416567 XM_414868.3 XP_414868.3
African clawed frog (Xenopus laevis)
Amphibia
Xl.340272
Xenopus laevis transcribed sequence with moderate similarity more
82.25(n)
 
BJ069178.1
zebrafish (Danio rerio)
Actinopterygii
zgc635912
similar to protein kinase C, beta
80.58(n)
 
393953 BC055154.1
fruit fly (Drosophila melanogaster)
Insecta
Pkc53E6 inaC6
inactivation no afterpotential C
63(a) 49(a)
many ↔ manymany ↔ many
2R(12812160-12832631) 2R(12786088-12789083)
worm (Caenorhabditis elegans)
Secernentea
pkc-21
Protein PKC-2
63.91(n) 68.56(a)
 
181166 NM_001029347.1 NP_001024518.1
ENSEMBL Gene Tree for PRKCB (if available)TreeFam Gene Tree for PRKCB (if available)
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Paralogsfor PRKCB gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for PRKCB gene PRKCQ 2 PRKCH 2 PRKCI 2 PRKCE 2 PKN1 2 PRKCA 2 PRKCD 2 PRKCZ 2 PKN3 2 PRKCG 2 PKN2 2 18/46 SIMAP similar genes for PRKCB using alignment to 4 protein entries: KPCB_HUMAN (see all proteins )
(see all similar genes ):PRKCA PRKD1 PRKCG PRKCZ PRKCE KIN27 PRKCI PRKACB PRKACA AKT3 RASA4 AKT1 SGK2 RPS6KA3 RPS6KA5 RPS6KB1 CHR11SYT PKN1
PRKCB for paralogs About GeneDecksing
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Genomic Variantsfor PRKCB gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 16 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for PRKCB (23847300 - 24097300 bp, first 250kb of PRKCB)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 15 variations for PRKCB 8 CNVs : 88014 66961 88016 88015 47954 4935 66960 77229 7 Indels : 45411 61499 25629 102237 40137 41639 45410 Human Gene Mutation Database (HGMD) : PRKCB SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing PRKCB
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Disorders
/ Diseasesfor PRKCB gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
PRKCB for disorders About GeneDecksing
OMIM gene information: 176970
OMIM disorders : --20/88 diseases for PRKCB (see all 88 ): About MalaCards diffuse large b-cell lymphoma diabetic macular edema b-cell lymphomas waldenstrom macroglobulinemia malignant pleural mesothelioma familial adenomatous polyposis type 2 diabetes mellitus diabetes mellitus uterine fibroid autism spectrum disorder spina bifida membranous glomerulonephritis insulin resistance diabetic retinopathy mantle cell lymphoma diabetic neuropathy systemic lupus erythematosus macroglobulinemia myotonic dystrophy aortic aneurysm 10/47 Novoseek disease relationships for PRKCB gene (see all 47 ) About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
diabetic retinopathy
63.3
13
14737743 (1), 17472415 (1), 15209756 (1), 16200860 (1) (see all 12 )
diabetic macular edema
60.5
2
16186374 (1), 19951615 (1)
hyperglycemia
56.2
10
12540629 (2), 20184965 (1), 14986905 (1), 17494892 (1) (see all 8 )
diabetic nephropathies
52.2
12
12874455 (4), 12540629 (2), 17693752 (1), 18485142 (1) (see all 7 )
myeloid leukemia
46.2
3
9858570 (1), 10438532 (1), 11746831 (1)
retinopathy
41.5
4
20431074 (1), 20141354 (1), 12507628 (1)
promyelocytic leukemia
40.9
1
1445803 (1)
macular edema
40.3
1
12507628 (1)
microangiopathy diabetic
39.6
4
14757134 (2), 17160912 (1), 11304414 (1)
blindness
34.7
1
16989901 (1)
Human Genome Epidemiology (HuGE) Navigator: PRKCB (16 documents) Export disorders for PRKCB gene to outside databases
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Publicationsfor PRKCB gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for PRKCB gene, integrated from 9 sources (see all 619 ): (articles sorted by number of sources associating them with PRKCB) Utopia : connect your pdf to the dynamic world of online information
Nucleotide sequence of the 3' portion of a human gene for protein kinase C beta-I/beta-II. (PubMed id 3658678) 1 , 2 , 3 Kubo K.... Suzuki K. (1987) Autoregulation of cloned human protein kinase C beta and gamma gene promoters in U937 cells. (PubMed id 7880442) 1 , 2 , 9 Mahajna J.... Haley J. (1995) Cloning and characterization of the major promoter of the human protein kinase C beta gene. Regulation by phorbol esters. (PubMed id 1400396) 1 , 2 , 9 Obeid L.M.... Hannun Y.A. (1992) Phosphorylation of histone H3T6 by PKCbeta(I) control s demethylation at histone H3K4. (PubMed id 20228790) 1 , 2 Metzger E....SchA1le R. (2010) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801) 1 , 2 Gevaert K.... Vandekerckhove J. (2003) PKCbeta modulates antigen receptor signaling via regulation of Btk membrane localization. (PubMed id 11598012) 1 , 2 Kang S.W....Rawlings D.J. (2001) Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PubMed id 10493829) 1 , 2 Loftus B.J.... Adams M.D. (1999) Positive and negative regulation of the transcription of the human protein kinase C beta gene. (PubMed id 1556124) 1 , 2 Niino Y.S.... Suzuki K. (1992) Primary structures of human protein kinase C beta I and beta II differ only in their C-terminal sequences. (PubMed id 3666134) 1 , 2 Kubo K.... Suzuki K. (1987)
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External Searches for PRKCB gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing PRKCB gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing PRKCB gene
(According to HUGE )
About This Section --
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Specialized Databases showing PRKCB gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for PRKCB Pharmacogenomics, SNPs, Pathways NIEHS-SNPs http://egp.gs.washington.edu/data/prkcb1/
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About This Section Patent Information for PRKCB gene: Search GeneIP for patents involving PRKCB GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor PRKCB gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for PRKCB OriGene shRNA RFP for PRKCB OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for PRKCB OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for PRKCB OriGene Protein Over-expression Lysate for PRKCB Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for PRKCB OriGene 3'-UTR Clone for PRKCB OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PRKCB OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PRKCB Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for PRKCB OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for PRKCB OriGene Custom Protein Services for PRKCB OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat PRKCB QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing PRKCB QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat PRKCB QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat PRKCB QIAGEN QuantiFast Probe-based Assays in human , mouse , rat PRKCB QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat PRKCB
Tocris compounds for PRKCB
Recombinant Protein for PRKCB
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PRKCB
ThermoFisher Antibody for PRKCB
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PRKCB
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