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Aliases for PRELID2 Gene

Aliases for PRELID2 Gene

  • PRELI Domain Containing 2 2 3
  • PRELI Domain-Containing Protein 2 3
  • CTC-806A22.1 3

External Ids for PRELID2 Gene

Summaries for PRELID2 Gene

GeneCards Summary for PRELID2 Gene

PRELID2 (PRELI Domain Containing 2) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PRELID2 Gene

Genomics for PRELID2 Gene

Genomic Location for PRELID2 Gene

Start:
145,471,799 bp from pter
End:
145,835,369 bp from pter
Size:
363,571 bases
Orientation:
Minus strand

Genomic View for PRELID2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PRELID2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRELID2 Gene

Regulatory Elements for PRELID2 Gene

Proteins for PRELID2 Gene

  • Protein details for PRELID2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N945-PRLD2_HUMAN
    Recommended name:
    PRELI domain-containing protein 2
    Protein Accession:
    Q8N945
    Secondary Accessions:
    • G5EA01
    • Q96EQ3

    Protein attributes for PRELID2 Gene

    Size:
    189 amino acids
    Molecular mass:
    21905 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BQ425760; Type=Frameshift; Positions=143, 169; Evidence={ECO:0000305};

    Alternative splice isoforms for PRELID2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PRELID2 Gene

Proteomics data for PRELID2 Gene at MOPED

Post-translational modifications for PRELID2 Gene

No Post-translational modifications

Other Protein References for PRELID2 Gene

No data available for DME Specific Peptides for PRELID2 Gene

Domains for PRELID2 Gene

Protein Domains for PRELID2 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

PRLD2_HUMAN
Domain:
  • Contains 1 PRELI/MSF1 domain.:
    • Q8N945
genes like me logo Genes that share domains with PRELID2: view

No data available for Gene Families for PRELID2 Gene

Function for PRELID2 Gene

Gene Ontology (GO) - Molecular Function for PRELID2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1990050 phosphatidic acid transporter activity IBA --
genes like me logo Genes that share ontologies with PRELID2: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for PRELID2 Gene

Localization for PRELID2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PRELID2 Gene COMPARTMENTS Subcellular localization image for PRELID2 gene
Compartment Confidence
cytosol 2
mitochondrion 2
nucleus 2
endoplasmic reticulum 1
extracellular 1

Gene Ontology (GO) - Cellular Components for PRELID2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion --
GO:0005758 mitochondrial intermembrane space IBA --
genes like me logo Genes that share ontologies with PRELID2: view

Pathways for PRELID2 Gene

SuperPathways for PRELID2 Gene

No Data Available

Interacting Proteins for PRELID2 Gene

Gene Ontology (GO) - Biological Process for PRELID2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015914 phospholipid transport IBA --
genes like me logo Genes that share ontologies with PRELID2: view

No data available for Pathways by source for PRELID2 Gene

Transcripts for PRELID2 Gene

Unigene Clusters for PRELID2 Gene

PRELI domain containing 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PRELID2 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b · 9c
SP1: - - -
SP2: - - -
SP3: - - - - -
SP4: - - -
SP5: -

Relevant External Links for PRELID2 Gene

GeneLoc Exon Structure for
PRELID2
ECgene alternative splicing isoforms for
PRELID2

Expression for PRELID2 Gene

mRNA expression in normal human tissues for PRELID2 Gene

mRNA differential expression in normal tissues according to GTEx for PRELID2 Gene

This gene is overexpressed in Colon - Transverse (6.4).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for PRELID2 Gene

SOURCE GeneReport for Unigene cluster for PRELID2 Gene Hs.314261

genes like me logo Genes that share expressions with PRELID2: view

Orthologs for PRELID2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for PRELID2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PRELID2 36
  • 99.25 (n)
  • 100 (a)
PRELID2 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LOC524741 36
  • 90.09 (n)
  • 89.19 (a)
PRELID2 37
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PRELID2 36
  • 92.66 (n)
  • 94.92 (a)
PRELID2 37
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Prelid2 36
  • 88.14 (n)
  • 88.7 (a)
Prelid2 16
Prelid2 37
  • 89 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia PRELID2 37
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PRELID2 37
  • 84 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Prelid2 36
  • 88.51 (n)
  • 88.14 (a)
lizard
(Anolis carolinensis)
Reptilia PRELID2 37
  • 68 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.8114 36
tropical clawed frog
(Silurana tropicalis)
Amphibia prelid2 36
  • 64.77 (n)
  • 60.8 (a)
Str.15586 36
Species with no ortholog for PRELID2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for PRELID2 Gene

ENSEMBL:
Gene Tree for PRELID2 (if available)
TreeFam:
Gene Tree for PRELID2 (if available)

Paralogs for PRELID2 Gene

Selected SIMAP similar genes for PRELID2 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for PRELID2 Gene

genes like me logo Genes that share paralogs with PRELID2: view

No data available for Paralogs for PRELID2 Gene

Variants for PRELID2 Gene

Sequence variations from dbSNP and Humsavar for PRELID2 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs104186 -- 145,832,859(+) TTCAC(A/C)AGTGC intron-variant
rs180291 -- 145,768,664(-) ACCTC(A/C)TAGGG intron-variant
rs186858 -- 145,825,201(+) agcct(C/T)ggtga intron-variant
rs189294 -- 145,823,383(+) ATGAG(A/G)TTAAG intron-variant
rs191436 -- 145,804,496(+) cagag(A/C)tagac intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PRELID2 Gene

Variant ID Type Subtype PubMed ID
nsv462474 CNV Loss 19166990
esv23730 CNV Gain 19812545

Relevant External Links for PRELID2 Gene

HapMap Linkage Disequilibrium report
PRELID2

Disorders for PRELID2 Gene

Relevant External Links for PRELID2

Genetic Association Database (GAD)
PRELID2
Human Genome Epidemiology (HuGE) Navigator
PRELID2
genes like me logo Genes that share disorders with PRELID2: view

No data available for UniProtKB/Swiss-Prot for PRELID2 Gene

Publications for PRELID2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49
  4. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 49
  5. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 49

Products for PRELID2 Gene

Sources for PRELID2 Gene

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