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Aliases & Descriptions for RNASEL
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DKFZp781D08126 2 EC 3.1.26.- 3 HPC1 5 MGC104972 2 MGC133329 2 OTTHUMP00000033148 2 PRCA1 2 , 5 RNS4 2 , 3 , 5
Descriptions 2',5'-oligoisoadenylate synthetase-dependent 2 2-5A-dependent RNase 3 RNase L 3 Ribonuclease 4 2 , 3 Ribonuclease L 2 , 3 interferon-induced 2-5A-dependent RNase 2 prostate cancer 1 1 ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) 2
Search outside databases for aliases for RNASEL genePrevious GC identifers: GC01M180070 GC01M177972 GC01M179063 GC01M179782 GC01M179274
Summaries for RNASEL (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for RNASEL : This gene encodes a component of the interferon-regulated 2-5A system that functions in theantiviral and antiproliferative roles of interferons. Mutations in this gene have been associatedwith predisposition to prostate cancer and this gene is a candidate for the hereditary prostatecancer 1 (HPC1) allele. [provided by RefSeq] UniProtKB/Swiss-Prot: RN5A_HUMAN, Q05823 Function : Endoribonuclease, mediator of interferon action, which play a role in mediatingresistance to virus infection and apoptosis. Might play a central role in the regulation of mRNAturnover
Gene Wiki entry for RNASEL
Genomic Location for RNASEL
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the RNASEL gene Entrez Gene cytogenetic band: 1q25 Ensembl cytogenetic band: 1q25.3 HGNC cytogenetic band: 1q25 RNASEL Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M180809:
(about GC identifiers )
Start:
180,809,395 bp from pter
End:
180,825,001 bp from pter
Size:
15,607 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000001.9 NT_004487.18 Proteins for RNASEL
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: RN5A_HUMAN, Q05823 (See
protein sequence )Recommended Name: 2-5A-dependent ribonuclease Size : 741 amino acids; 83533 Da
Cofactor : Manganese or magnesium. Required for optimal RNA cleavage rates
Subunit : Monomer (inactive form) or homodimer
Subcellular location : Cytoplasm. Mitochondrion
PDB structures from and Proteopedia : 1WDY (3D)
 
REFSEQ proteins: NP_066956.1 ENSEMBL proteins: ENSP00000356530 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for RNASEL: Assays for RNASEL:
Protein
Domains/ Families for RNASEL(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q05823 ProtoNet protein and cluster: Q05823
2 Blocks protein families : IPB006567 PUG IPB010513 Ribonuclease 2-5A UniProtKB/Swiss-Prot: RN5A_HUMAN, Q05823 Domain : The protein kinase domain is predicted to be catalytically inactive. It allows thehomodimerization Domain : The nine ankyrin repeats also called 2-5A sensor constitute the 2-5A binding domainSimilarity : Belongs to the protein kinase superfamilySimilarity : Contains 9 ANK repeatsSimilarity : Contains 1 KEN domainSimilarity : Contains 1 protein kinase domain
Gene Function for RNASEL
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_021133 Applied Biosystems Silencer ® siRNAs for RNASEL Sigma-Aldrich siRNA and siRNA Panels for RNASEL Sigma-Aldrich shRNA Panels and shRNA for RNASEL Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_021133                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_021133                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_021133  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_021133 UniProtKB/Swiss-Prot: RN5A_HUMAN, Q05823 Function : Endoribonuclease, mediator of interferon action, which play a role in mediatingresistance to virus infection and apoptosis. Might play a central role in the regulation of mRNAturnover Catalytic activity : Cleaves 3' of UpNp dimers, with preference for UU and UA sequences, to sets ofdiscrete products ranging from between 4 and 22 nucleotides in length Enzyme regulation : After binding to 2-5A (5'-phosphorylated 2',5'-linked oligoadenylates) thehomodimerization and subsequent activation occurs. Inhibited by RNase L inhibitor Induction : By interferonsEnzyme Number (IUBMB): EC 3.1.26.-
Genatlas biochemistry entry for RNASEL :ribonuclease L,2',5'-oligoisoadenylate dependent,interferon regulated pathway
2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Rnasel) :5/8 Gene Ontology (GO) molecular function terms (links to tree view) (see all 8
):
About this table
Pathways & Interactions for RNASEL
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for RNASEL (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for RNASEL 5/10 Interacting proteins for RNASEL (ENSP00000356530 3 ) via UniProtKB, MINT, and/or STRING (see all 10
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for RNASEL (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for RNASEL 10/14 Novoseek chemical compound relationships for RNASEL gene (see all 14
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
ecyd
85.99
42
18668243 (3), 18029773 (2), 12903334 (2), 17150838 (2) (see all 5 )
8-methyladenosine
83.89
2
12757397 (1)
oligoribonucleotide
62.32
5
8617774 (2), 14604670 (1), 10726660 (1), 10474231 (1)
phosphorothioate
46.28
5
7685081 (2), 7890727 (2), 14583476 (1)
rrna
43.86
19
8017832 (2), 11152576 (2), 12903195 (2), 12903334 (2) (see all 7 )
oligonucleotide
41.81
10
7679499 (2), 18950583 (1), 11878909 (1), 9111293 (1) (see all 8 )
atp
34.61
9
15013441 (1), 9862963 (1), 15383904 (1), 18160405 (1) (see all 7 )
ifn-alpha
29.70
11
17431428 (3), 11585831 (2)
uridine
23.28
1
8223579 (1)
ribonucleic acid
1.14
4
12752687 (1), 16000857 (1)
About this table
Transcripts for RNASEL(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_021133 Sigma-Aldrich siRNA and siRNA Panels for RNASEL Sigma-Aldrich shRNA Panels and shRNA for RNASEL Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_021133
REFSEQ mRNAs for RNASEL gene: NM_021133.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_021133
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_021133                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_021133                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_021133  
Additional cDNA sequence: AK315231.1 BC090934.1 BC114433.1 BC115697.1 CR627369.1 DQ352452.1
4 DOTS entries : DT.211589 DT.86837487 DT.92002335 DT.425435
24/57 AceView cDNA sequences (see all 57
):BX280477 CR627369 BQ216121 NM_021133 C01514 AW016315 AA046353 BX502854 BQ030219 BP336508 BQ003187 CF527913 BG427155 BE049527 AA902343 AA257976 AA377605 AW968304 BP335764 CF143886 BI259008 AI669749 BE778138 CA447181
highest scoring ESTs for RNASEL :AI669749 AW501465 BU940316 BX502854 CF143886 AA046353 AA257976 AA258106 AA377605 AA779940
Unigene Cluster for RNASEL: Ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) Hs.518545 [show with all ESTs ] Unigene Representative Sequence: BC090934 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation : ENST00000367559
Expression for RNASEL
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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RNASEL expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for RNASEL 1 / 2 / 3
5 probe-sets matching RNASEL gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AATCATTGTGSOURCE GeneReport for Unigene cluster: Hs.518545 UniProtKB/Swiss-Prot: RN5A_HUMAN, Q05823 Tissue specificity : Highly expressed in spleen and thymus followed by prostate, testis, uterus,small intestine, colon and peripheral blood leukocytes
Orthologs for RNASEL
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for RNASEL gene from 5 species
About this table Species with no ortholog for RNASEL ENSEMBL Gene Tree for RNASEL Paralogs for RNASEL (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for RNASEL (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for RNASEL (up to first 250kb)
Disorders & Mutations for RNASEL
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 180435 disorders : 601518 UniProtKB/Swiss-Prot: RN5A_HUMAN, Q05823
Defects in RNASEL may be the cause of susceptibility to hereditary prostate cancer 1(HPC1) [MIM:176807, 601518]
10/26 Novoseek disease relationships for RNASEL gene (see all 26
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
prostate cancer, hereditary, 1
94.00
11
12590567 (1), 11799394 (1), 15604285 (1), 16241858 (1) (see all 8 )
chronic fatigue syndrome
69.85
16
7893988 (2), 8148461 (2), 15924878 (2), 16277015 (2) (see all 11 )
prostate cancer
64.96
112
12590567 (6), 16537704 (6), 18189233 (5), 18767027 (4) (see all 43 )
virus infection
57.16
20
18029773 (2), 7679499 (2), 1374726 (1), 16235172 (1) (see all 13 )
parainfluenza
44.66
2
9858317 (1), 17535916 (1)
fibrosarcoma
35.49
2
17055253 (2)
vesicular stomatitis
31.24
1
9858317 (1)
malignant glioma
24.98
1
11586885 (1)
immunodeficiency
19.34
7
9847332 (2), 7890727 (1), 18160405 (1)
herpes simplex
19.05
3
19042034 (1), 17205688 (1)
About this table Human Gene Mutation Database : RNASEL Genetic Association Database: RNASEL Human Genome Epidemiology Navigator: RNASEL (31 documents)
Medical News for RNASEL (Possibly Related Articles in
Doctor's Guide )
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Publications for RNASEL (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/229 PubMed articles for RNASEL gene (see all 229
): Germline alterations of the RNASEL gene, a candidate HPC1 gene at 1q25, in patients and families with prostate cancer. (PubMed id 11941539) 1, 3, 4, 6 Roekman A.... Schleutker J. (2002) The 2-5A system in viral infection and apoptosis. (PubMed id 9856285) 1, 3, 4 Castelli J.... Youle R.J. (1998) Alternative function of a protein kinase homology domain in 2', 5'- oligoadenylate dependent RNase L. (PubMed id 9862963) 1, 3, 4 Dong B. and Silverman R.H. (1999) Mutation screening and association study of RNASEL as a prostate cancer susceptibility gene. (PubMed id 15714208) 1, 3, 6 Maier C....Paiss T. (2005) Germline mutations in the ribonuclease L gene in families showing linkage with HPC1. (PubMed id 11799394) 1, 3, 4 Carpten J.... Trent J. (2002) Basis for regulated RNA cleavage by functional analysis of RNase L and Ire1p. (PubMed id 11333017) 1, 3, 4 Dong B.... Silverman R.H. (2001) The 2-5A/RNase L/RNase L inhibitor (RNI) pathway regulates mitochondrial mRNAs stability in interferon alpha-treated H9 cells. (PubMed id 11585831) 1, 3, 4 Le Roy F....Salehzada T. (2001) Genetic analysis of the RNASEL gene in hereditary, familial, and sporadic prostate cancer. (PubMed id 15534086) 1, 3, 6 Wiklund F....Gronberg H. (2004) Role of genetic polymorphisms of the RNASEL gene on familial prostate cancer risk in a Japanese population. (PubMed id 12915880) 1, 3, 6 Nakazato H....Yamanaka H. (2003) Intrinsic molecular activities of the interferon-induced 2-5A- dependent RNase. (PubMed id 7514601) 1, 3, 4 Dong B....Silverman R.H. (1994)
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Genome Databases showing RNASEL
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing RNASEL
(According to HUGE )
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Specialized Databases showing RNASEL (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for RNASEL (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for RNASEL:
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