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Aliases for PQLC2L Gene

Aliases for PQLC2L Gene

  • PQ Loop Repeat Containing 2-Like 2 3
  • PQ-Loop Repeat-Containing Protein 2-Like 3 4
  • C3orf55 3 4
  • Putative Uncharacterized Protein PQLC2L 3
  • Chromosome 3 Open Reading Frame 55 2

External Ids for PQLC2L Gene

Previous HGNC Symbols for PQLC2L Gene

  • C3orf55

Summaries for PQLC2L Gene

GeneCards Summary for PQLC2L Gene

PQLC2L (PQ Loop Repeat Containing 2-Like) is a Protein Coding gene. An important paralog of this gene is PQLC2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PQLC2L Gene

Genomics for PQLC2L Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for PQLC2L Gene

Start:
157,543,246 bp from pter
End:
157,677,749 bp from pter
Size:
134,504 bases
Orientation:
Plus strand

Genomic View for PQLC2L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PQLC2L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PQLC2L Gene

No data available for Regulatory Elements for PQLC2L Gene

Proteins for PQLC2L Gene

  • Protein details for PQLC2L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A1A4F0-CC055_HUMAN
    Recommended name:
    Putative uncharacterized protein PQLC2L
    Protein Accession:
    A1A4F0
    Secondary Accessions:
    • C9JP04
    • C9JXB5
    • Q8N6Q6

    Protein attributes for PQLC2L Gene

    Size:
    135 amino acids
    Molecular mass:
    15626 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH29129.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305};

    Alternative splice isoforms for PQLC2L Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PQLC2L Gene

Proteomics data for PQLC2L Gene at MOPED

Post-translational modifications for PQLC2L Gene

No Post-translational modifications

No data available for DME Specific Peptides for PQLC2L Gene

Domains for PQLC2L Gene

Protein Domains for PQLC2L Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PQLC2L: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PQLC2L Gene

Function for PQLC2L Gene

Phenotypes for PQLC2L Gene

GenomeRNAi human phenotypes for PQLC2L:
genes like me logo Genes that share phenotypes with PQLC2L: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for PQLC2L Gene

Localization for PQLC2L Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PQLC2L Gene

Pathways for PQLC2L Gene

SuperPathways for PQLC2L Gene

No Data Available

Interacting Proteins for PQLC2L Gene

Gene Ontology (GO) - Biological Process for PQLC2L Gene

None

No data available for Pathways by source for PQLC2L Gene

Transcripts for PQLC2L Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PQLC2L

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for PQLC2L
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PQLC2L Gene

No ASD Table

Relevant External Links for PQLC2L Gene

GeneLoc Exon Structure for
PQLC2L
ECgene alternative splicing isoforms for
PQLC2L

Expression for PQLC2L Gene

mRNA expression in normal human tissues for PQLC2L Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for PQLC2L Gene

genes like me logo Genes that share expressions with PQLC2L: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for PQLC2L Gene

Orthologs for PQLC2L Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for PQLC2L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C3orf55 36
  • 94 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C3orf55 36
  • 32 (a)
OneToOne
chicken
(Gallus gallus)
Aves C3orf55 36
  • 7 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 12 (a)
OneToMany
-- 36
  • 24 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea laat-1 36
  • 10 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes -- 36
  • 9 (a)
ManyToMany
-- 36
  • 8 (a)
ManyToMany
RTC2 36
  • 9 (a)
ManyToMany
Species with no ortholog for PQLC2L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for PQLC2L Gene

ENSEMBL:
Gene Tree for PQLC2L (if available)
TreeFam:
Gene Tree for PQLC2L (if available)

Paralogs for PQLC2L Gene

Paralogs for PQLC2L Gene

genes like me logo Genes that share paralogs with PQLC2L: view

Variants for PQLC2L Gene

Sequence variations from dbSNP and Humsavar for PQLC2L Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs16887 -- 157,657,018(+) AGATT(C/T)AACTC intron-variant
rs16888 -- 157,657,298(-) GCAAG(G/T)GTATC intron-variant
rs749422 -- 157,545,906(-) AGGTG(C/T)TGCTT intron-variant
rs792746 -- 157,657,444(+) CTAGA(A/G)CACAG intron-variant
rs792747 -- 157,658,106(+) cttga(C/T)tggct intron-variant

Relevant External Links for PQLC2L Gene

HapMap Linkage Disequilibrium report
PQLC2L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for PQLC2L Gene

Disorders for PQLC2L Gene

No disorders were found for PQLC2L Gene.

No data available for UniProtKB/Swiss-Prot for PQLC2L Gene

Publications for PQLC2L Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Cystinosin, MPDU1, SWEETs and KDELR belong to a well-defined protein family with putative function of cargo receptors involved in vesicle trafficking. (PMID: 22363504) Saudek V. (PLoS ONE 2012) 2 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4
  5. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier L.D. … Marra M. (Genome Res. 1996) 3

Products for PQLC2L Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate PQLC2L
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for PQLC2L
    • Block miRNA regulation of PQLC2L using miScript Target Protectors

    Sources for PQLC2L Gene

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