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PPP4R1L Gene

protein-coding   GIFtS: 41
GCID: GC20M056806

Protein Phosphatase 4, Regulatory Subunit 1-Like


(Previous symbol: C20orf192)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Protein Phosphatase 4, Regulatory Subunit 1-Like1 2
C20orf1921 2 3
PRO10852

External Ids:    HGNC: 157551   Entrez Gene: 553702   Ensembl: ENSG000001242247   UniProtKB: Q9P1A23   

Export aliases for PPP4R1L gene to outside databases

Previous GC identifers: GC20M056534 GC20M057444 GC20M057491 GC20M057492 GC20M056239 GC20M056246 GC20M053590


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for PPP4R1L Gene:
PPP4R1L (protein phosphatase 4, regulatory subunit 1-like) is a protein-coding gene. An important paralog of this gene is PPP4R1.

UniProtKB/Swiss-Prot: PP4RL_HUMAN, Q9P1A2
Function: May be a regulatory subunit of serine/threonine-protein phosphatase 4




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000020.10  NC_018931.2  NT_011362.11  
Regulatory elements:
   Regulatory transcription factor binding sites in the PPP4R1L gene promoter:
         SRF   AP-1   SRF (504 AA)   c-Ets-1   CREB   deltaCREB   COMP1   Meis-1a   Pax-4a   Meis-1   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for PPP4R1L

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat PPP4R1L


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 20q13.32   Ensembl cytogenetic band:  20q13.32   HGNC cytogenetic band: 20q13.32

PPP4R1L Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
PPP4R1L gene location

GeneLoc information about chromosome 20         GeneLoc Exon Structure

GeneLoc location for GC20M056806:  view genomic region     (about GC identifiers)

Start:
56,806,188 bp from pter      End:
56,884,495 bp from pter
Size:
78,308 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: PP4RL_HUMAN, Q9P1A2 (See protein sequence)
Recommended Name: Putative serine/threonine-protein phosphatase 4 regulatory subunit 1-like  
Size: 415 amino acids; 45908 Da
Caution: Could be the product of a pseudogene
Sequence caution: Sequence=AAF69597.1; Type=Miscellaneous discrepancy; Note=Wrong choice of frame;
Secondary accessions: B4DRM4 Q9BZ17 Q9BZ18

Explore the universe of human proteins at neXtProt for PPP4R1L: NX_Q9P1A2

Explore proteomics data for PPP4R1L at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See PPP4R1L Protein Expression from SPIRE MOPED, PaxDB, and MaxQB


    ENSEMBL proteins: 
     ENSP00000435205   ENSP00000402088   ENSP00000435897   ENSP00000244070   ENSP00000388468  
     ENSP00000335579  

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    antibodies-online proteins for PPP4R1L (2 products) 

     
    antibodies-online peptides for PPP4R1L

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    antibodies-online antibodies for PPP4R1L (14 products) 

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    antibodies-online kits for PPP4R1L (2 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    3 InterPro protein domains:
     IPR011989 ARM-like
     IPR021133 HEAT_type_2
     IPR016024 ARM-type_fold

    Graphical View of Domain Structure for InterPro Entry Q9P1A2

    ProtoNet protein and cluster: Q9P1A2

    1 Blocks protein domain: IPB000357 HEAT repeat

    UniProtKB/Swiss-Prot: PP4RL_HUMAN, Q9P1A2
    Similarity: Contains 4 HEAT repeats


    Find genes that share domains with PPP4R1L           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: PP4RL_HUMAN, Q9P1A2
    Function: May be a regulatory subunit of serine/threonine-protein phosphatase 4

         Gene Ontology (GO): 3 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
    GO:0005488binding ----
    GO:0005515protein binding ----
         
    Find genes that share ontologies with PPP4R1L           About GenesLikeMe


    Phenotypes:
         4 GenomeRNAi human phenotypes for PPP4R1L:
     Apoptosis resistance  G0/1 arrest  Increased G1 DNA content  Upregulation of NF-kappaB path 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for PPP4R1L

    miRNA
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    miRTarBase miRNAs that target PPP4R1L:
    hsa-mir-335-5p (MIRT018259)

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    nucleus2
    mitochondrion1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--

    Find genes that share ontologies with PPP4R1L           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for PPP4R1L
    Interactions:

        Search GeneGlobe Interaction Network for PPP4R1L

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--

    Find genes that share ontologies with PPP4R1L           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for PPP4R1L (PP4RL)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for PPP4R1L gene: 
    NM_018498.2  

    Unigene Cluster for PPP4R1L:

    Protein phosphatase 4, regulatory subunit 1-like
    Hs.473179  [show with all ESTs]
    Unigene Representative Sequence: AL833409
    12 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000497138(uc002xyw.3) ENST00000457990 ENST00000467784 ENST00000493688
    ENST00000606437 ENST00000473210 ENST00000495058 ENST00000475130 ENST00000244070(uc002xyy.1)
    ENST00000422302 ENST00000462333 ENST00000334187(uc010gjn.1)
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      QuantiFast Probe-based Assays in human, mouse, rat PPP4R1L

    Additional mRNA sequence: 

    AK299330.1 AL833409.1 BC100979.1 BC100980.1 NR_003505.3 

    8 DOTS entries:

    DT.97807532  DT.40259633  DT.70105293  DT.95203896  DT.92026381  DT.120822198  DT.120822208  DT.424297 

    Selected AceView cDNA sequences (see all 38):

    BE463655 CD654184 AK057583 CR605633 C01463 AI247378 AL844407 AL844408 
    BU621256 BM842626 AI125386 BX422703 AI675992 AI218093 BM970884 AL833409 
    AI368196 AI478717 BG742094 BX452457 AI281001 BE245386 AV722049 BM544935 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for PPP4R1L (see all 7)    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b · 9c ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b ^ 13 ^ 14a · 14b ^ 15 ^ 16a · 16b · 16c ^ 17a · 17b ·
    SP1:                    -                                                     -     -                                                                           
    SP2:                                                                          -     -                                   -           -                           
    SP3:                                                                                                                                                            
    SP4:                                                                                                                                                            
    SP5:                                                                                                                    -           -           -               

    ExUns: 17c ^ 18
    SP1:            
    SP2:            
    SP3:            
    SP4:            
    SP5:            


    ECgene alternative splicing isoforms for PPP4R1L

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    PPP4R1L expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GTCTCCAGGG
    PPP4R1L Expression
    About this image

    PPP4R1L Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    PPP4R1L Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.473179
        Custom PCR Arrays for PPP4R1L
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PPP4R1L

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for PPP4R1L gene from Selected species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    dog
    (Canis familiaris)
    Mammalia PPP4R1L6
    protein phosphatase 4, regulatory subunit 1-like
    19(a)
    1 ↔ 1
    24(43028155-43108032)
    chicken
    (Gallus gallus)
    Aves PPP4R1L6
    protein phosphatase 4, regulatory subunit 1-like
    15(a)
    1 ↔ 1
    20(11575896-11593722)
    lizard
    (Anolis carolinensis)
    Reptilia PPP4R1L6
    protein phosphatase 4, regulatory subunit 1-like
    15(a)
    1 ↔ 1
    GL343217.1(150335-210329)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia 1420055212   -- 77.28(n)    142005521 
    zebrafish
    (Danio rerio)
    Actinopterygii PPP4R1L6
    protein phosphatase 4, regulatory subunit 1-like
    12(a)
    1 ↔ 1
    6(49475700-49499346) ENSDARG00000079289
    worm
    (Caenorhabditis elegans)
    Secernentea ppfr-16
    Protein PPFR-1, isoform c (ppfr-1) mRNA, complete ...
    4(a)
    1 → many
    I(9364175-9390093) WBGene00008878


    ENSEMBL Gene Tree for PPP4R1L (if available)
    TreeFam Gene Tree for PPP4R1L (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for PPP4R1L gene
    PPP4R12  
    1 SIMAP similar gene for PPP4R1L using alignment to 6 protein entries:     PP4RL_HUMAN (see all proteins):
    PPP4R1

    Find genes that share paralogs with PPP4R1L           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for PPP4R1L (see all 1511)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 20 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1451347761,2
    --53669050(+) TAAATG/TGTTTT 1 -- us2k10--------
    rs5650271,2
    C,F,A,H--53669090(+) CTGAAG/CCCTTA 1 -- us2k112Minor allele frequency- C:0.46NA WA CSA EA 377
    rs60703891,2
    F,H--56807423(+) GTTAAG/AGCTTA 1 -- ds50014Minor allele frequency- A:0.01NS EA 420
    rs1897234791,2
    --56807523(+) TAGCAC/TATGTT 1 -- ds50010--------
    rs60152271,2
    C,F,A,H--56807673(+) GGAAAA/G/TCTAGT 1 -- ds500111NS EA NA WA 1212
    rs22749321,2
    C,F,H--56807792(+) CCTCAC/TGTTGG 1 -- ds5001 ese323Minor allele frequency- T:0.11NS EA NA WA EU 3419
    rs1140048041,2
    F--56807889(+) GCCTGC/TTCCAA 1 -- nc-transcript-variant1Minor allele frequency- T:0.01WA 118
    rs794262461,2
    C--56807892(+) TGCTCA/CAAGAA 1 -- nc-transcript-variant0--------
    rs1828941521,2
    --56807921(+) GATGTC/TTTCCG 1 -- nc-transcript-variant0--------
    rs38187441,2
    C,F,A,H--56807969(+) AAGTCA/GTTTCA 1 -- nc-transcript-variant32Minor allele frequency- G:0.44NA NS EA WA EU 3923

    HapMap Linkage Disequilibrium report for PPP4R1L (56806188 - 56884495 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for PPP4R1L:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2722620CNV Deletion23290073

    Site Specific Mutation Identification with PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing PPP4R1L
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    Find genes that share disorders with PPP4R1L           About GenesLikeMe

    Genetic Association Database (GAD): PPP4R1L

    Export disorders for PPP4R1L gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for PPP4R1L gene integrated from 10 sources:
    (articles sorted by number of sources associating them with PPP4R1L)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2, 3 Ota T.... Sugano S. (Nat. Genet. 2004)
    2. The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052)1, 2, 3 Deloukas P....Rogers J. (Nature 2001)
    3. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (Mol. Cell 2011)
    4. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (amp 2011)
    5. A genome-wide association study identifies a novel major locus for glycemic control in type 1 diabetes, as measured by both A1C and glucose. (PubMed id 19875614)4 Paterson A.D....Bull S.B. (Diabetes 2010)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    7. Gene expression profiling in human fetal liver and identification of tissue- and developmental-stage-specific genes through compiled expression profiles and efficient cloning of full-length cDNAs. (PubMed id 11483580)1 Yu Y....He F. (Genome Res. 2001)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 55370 HGNC: 15755 AceView: PPP4R1L Ensembl:ENSG00000124224 euGenes: HUgn55370
    ECgene: PPP4R1L H-InvDB: PPP4R1L

    (According to HUGE)
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for PPP4R1L Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for PPP4R1L gene:
    Search GeneIP for patents involving PPP4R1L

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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