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Aliases for PPP1R13L Gene

Aliases for PPP1R13L Gene

  • Protein Phosphatase 1 Regulatory Subunit 13 Like 2 3 5
  • Protein Phosphatase 1, Regulatory (Inhibitor) Subunit 13 Like 2 3
  • Inhibitor Of ASPP Protein 3 4
  • PPP1R13B-Like Protein 3 4
  • Protein IASPP 3 4
  • IASPP 3 4
  • NKIP1 3 4
  • RAI 3 4
  • Protein Phosphatase 1, Regulatory Subunit 13 Like 2
  • Inhibitor Of Apoptosis Stimulating Protein Of P53 3
  • NFkB Interacting Protein 1 3
  • NFkB-Interacting Protein 1 4
  • RelA-Associated Inhibitor 3
  • Retinoic Acid Induced 4 3
  • PPP1R13BL 4
  • RAI4 3

External Ids for PPP1R13L Gene

Previous GeneCards Identifiers for PPP1R13L Gene

  • GC19M050575
  • GC19M045883
  • GC19M042315

Summaries for PPP1R13L Gene

Entrez Gene Summary for PPP1R13L Gene

  • IASPP is one of the most evolutionarily conserved inhibitors of p53 (TP53; MIM 191170), whereas ASPP1 (MIM 606455) and ASPP2 (MIM 602143) are activators of p53.[supplied by OMIM, Mar 2008]

GeneCards Summary for PPP1R13L Gene

PPP1R13L (Protein Phosphatase 1 Regulatory Subunit 13 Like) is a Protein Coding gene. Among its related pathways are Regulation of TP53 Activity and Gene Expression. GO annotations related to this gene include identical protein binding and transcription corepressor activity. An important paralog of this gene is TP53BP2.

UniProtKB/Swiss-Prot for PPP1R13L Gene

  • Regulator that plays a central role in regulation of apoptosis and transcription via its interaction with NF-kappa-B and p53/TP53 proteins. Blocks transcription of HIV-1 virus by inhibiting the action of both NF-kappa-B and SP1. Also inhibits p53/TP53 function, possibly by preventing the association between p53/TP53 and ASPP1 or ASPP2, and therefore suppressing the subsequent activation of apoptosis.

Gene Wiki entry for PPP1R13L Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PPP1R13L Gene

Genomics for PPP1R13L Gene

Regulatory Elements for PPP1R13L Gene

Enhancers for PPP1R13L Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F045438 1.6 FANTOM5 Ensembl ENCODE 13.7 -39.5 -39530 14.2 CREB3L1 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 MEF2D ZNF610 CD3EAP ERCC1 RTN2 CCDC61 RELB PPM1N FBXO46 ZNF180 IGFL4 LOC105372421
GH19F045472 0.2 ENCODE 12 -66.6 -66576 1.3 RFX1 MTA2 SMAD5 NR4A1 HLF BMI1 ZBTB7A ZFHX2 SMARCA4 POLR2A PPP1R13L CD3EAP RTN2 VASP ERCC1 PPM1N GC19P045469 GC19P045474
GH19F045474 0.8 ENCODE 12 -68.5 -68539 0.2 BCOR ZMYM3 REST CEBPG CHD7 ZBTB40 POLR2A ADNP PPP1R13L CD3EAP RTN2 VASP GC19P045474 GC19P045469
GH19F045475 0.9 ENCODE 12 -68.4 -68369 0.1 BCOR POLR2A ADNP ZMYM3 REST PPP1R13L CD3EAP RTN2 VASP GC19P045469 GC19P045474
GH19F045471 0.6 ENCODE 12 -65.3 -65289 0.2 ZFHX2 PRDM1 EGR2 PPP1R13L CD3EAP RTN2 VASP GC19P045469 GC19P045474
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around PPP1R13L on UCSC Golden Path with GeneCards custom track

Promoters for PPP1R13L Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001419481 349 4000 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 YY1 ZNF207

Transcription factor binding sites by QIAGEN in the PPP1R13L gene promoter:

Genomic Location for PPP1R13L Gene

Chromosome:
19
Start:
45,379,634 bp from pter
End:
45,406,349 bp from pter
Size:
26,716 bases
Orientation:
Minus strand

Genomic View for PPP1R13L Gene

Genes around PPP1R13L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PPP1R13L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PPP1R13L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PPP1R13L Gene

Proteins for PPP1R13L Gene

  • Protein details for PPP1R13L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WUF5-IASPP_HUMAN
    Recommended name:
    RelA-associated inhibitor
    Protein Accession:
    Q8WUF5
    Secondary Accessions:
    • Q2PNZ9
    • Q5DU71
    • Q5I1X4
    • Q6P1R7
    • Q6PKF8
    • Q9Y290

    Protein attributes for PPP1R13L Gene

    Size:
    828 amino acids
    Molecular mass:
    89091 Da
    Quaternary structure:
    • Interacts with RELA NF-kappa-B subunit and with SP1 via its C-terminus part. Interacts with p53/TP53, TP63 and TP73.
    SequenceCaution:
    • Sequence=AAD27004.1; Type=Frameshift; Positions=439, 483, 562, 591; Evidence={ECO:0000305}; Sequence=AAD27005.1; Type=Frameshift; Positions=483, 562, 591; Evidence={ECO:0000305}; Sequence=AAD27005.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for PPP1R13L Gene

neXtProt entry for PPP1R13L Gene

Post-translational modifications for PPP1R13L Gene

  • Ubiquitination at Lys 541
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for PPP1R13L Gene

Domains & Families for PPP1R13L Gene

Gene Families for PPP1R13L Gene

Protein Domains for PPP1R13L Gene

Suggested Antigen Peptide Sequences for PPP1R13L Gene

Graphical View of Domain Structure for InterPro Entry

Q8WUF5

UniProtKB/Swiss-Prot:

IASPP_HUMAN :
  • The N-terminal region is required for cytoplasmic localization.
  • Belongs to the ASPP family.
  • Contains 2 ANK repeats.
Domain:
  • The N-terminal region is required for cytoplasmic localization.
  • Contains 1 SH3 domain.
Family:
  • Belongs to the ASPP family.
Similarity:
  • Contains 2 ANK repeats.
genes like me logo Genes that share domains with PPP1R13L: view

Function for PPP1R13L Gene

Molecular function for PPP1R13L Gene

UniProtKB/Swiss-Prot Function:
Regulator that plays a central role in regulation of apoptosis and transcription via its interaction with NF-kappa-B and p53/TP53 proteins. Blocks transcription of HIV-1 virus by inhibiting the action of both NF-kappa-B and SP1. Also inhibits p53/TP53 function, possibly by preventing the association between p53/TP53 and ASPP1 or ASPP2, and therefore suppressing the subsequent activation of apoptosis.

Gene Ontology (GO) - Molecular Function for PPP1R13L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003714 transcription corepressor activity TAS 10336463
GO:0005515 protein binding IPI 17906639
GO:0008134 transcription factor binding IEA --
GO:0042802 identical protein binding IPI 23623661
GO:0098641 cadherin binding involved in cell-cell adhesion IDA 25468996
genes like me logo Genes that share ontologies with PPP1R13L: view
genes like me logo Genes that share phenotypes with PPP1R13L: view

Animal Models for PPP1R13L Gene

MGI Knock Outs for PPP1R13L:

Animal Model Products

miRNA for PPP1R13L Gene

miRTarBase miRNAs that target PPP1R13L

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for PPP1R13L Gene

Localization for PPP1R13L Gene

Subcellular locations from UniProtKB/Swiss-Prot for PPP1R13L Gene

Cytoplasm. Nucleus. Note=Predominantly cytoplasmic but also nuclear. {ECO:0000269 PubMed:15489900}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PPP1R13L Gene COMPARTMENTS Subcellular localization image for PPP1R13L gene
Compartment Confidence
nucleus 5
extracellular 4
cytosol 3

Gene Ontology (GO) - Cellular Components for PPP1R13L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus TAS 10336463
GO:0005654 nucleoplasm TAS --
GO:0005737 cytoplasm IDA --
GO:0005913 cell-cell adherens junction IDA 25468996
GO:0030054 cell junction IDA --
genes like me logo Genes that share ontologies with PPP1R13L: view

Pathways & Interactions for PPP1R13L Gene

genes like me logo Genes that share pathways with PPP1R13L: view

Gene Ontology (GO) - Biological Process for PPP1R13L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IEA --
GO:0003215 cardiac right ventricle morphogenesis IEA --
GO:0003229 ventricular cardiac muscle tissue development IEA --
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with PPP1R13L: view

No data available for SIGNOR curated interactions for PPP1R13L Gene

Drugs & Compounds for PPP1R13L Gene

(1) Drugs for PPP1R13L Gene - From: PharmGKB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Platinum compounds Pharma 0
genes like me logo Genes that share compounds with PPP1R13L: view

Transcripts for PPP1R13L Gene

Unigene Clusters for PPP1R13L Gene

Protein phosphatase 1, regulatory subunit 13 like:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PPP1R13L Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b
SP1:
SP2:
SP3: -

Relevant External Links for PPP1R13L Gene

GeneLoc Exon Structure for
PPP1R13L
ECgene alternative splicing isoforms for
PPP1R13L

Expression for PPP1R13L Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PPP1R13L Gene

mRNA differential expression in normal tissues according to GTEx for PPP1R13L Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x6.8), Skin - Not Sun Exposed (Suprapubic) (x6.8), and Esophagus - Mucosa (x5.2).

Protein differential expression in normal tissues from HIPED for PPP1R13L Gene

This gene is overexpressed in Cervix (30.3), Urine (14.8), and Pancreas (7.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for PPP1R13L Gene



NURSA nuclear receptor signaling pathways regulating expression of PPP1R13L Gene:

PPP1R13L

SOURCE GeneReport for Unigene cluster for PPP1R13L Gene:

Hs.466937

mRNA Expression by UniProt/SwissProt for PPP1R13L Gene:

Q8WUF5-IASPP_HUMAN
Tissue specificity: Highly expressed in heart, placenta and prostate. Weakly expressed in brain, liver, skeletal muscle, testis and peripheral blood leukocyte.
genes like me logo Genes that share expression patterns with PPP1R13L: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Protein tissue co-expression partners for PPP1R13L Gene

Orthologs for PPP1R13L Gene

This gene was present in the common ancestor of animals.

Orthologs for PPP1R13L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PPP1R13L 34 35
  • 99.36 (n)
dog
(Canis familiaris)
Mammalia PPP1R13L 35
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia PPP1R13L 34 35
  • 86.43 (n)
rat
(Rattus norvegicus)
Mammalia Ppp1r13l 34
  • 82.97 (n)
mouse
(Mus musculus)
Mammalia Ppp1r13l 34 16 35
  • 82.81 (n)
oppossum
(Monodelphis domestica)
Mammalia PPP1R13L 35
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PPP1R13L 35
  • 66 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PPP1R13L 35
  • 59 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.6245 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.19607 34
zebrafish
(Danio rerio)
Actinopterygii ppp1r13l 35
  • 35 (a)
OneToOne
Dr.19303 34
fruit fly
(Drosophila melanogaster)
Insecta ASPP 35
  • 18 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea ape-1 35
  • 20 (a)
ManyToMany
mel-11 35
  • 11 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 18 (a)
OneToMany
Species where no ortholog for PPP1R13L was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PPP1R13L Gene

ENSEMBL:
Gene Tree for PPP1R13L (if available)
TreeFam:
Gene Tree for PPP1R13L (if available)

Paralogs for PPP1R13L Gene

Paralogs for PPP1R13L Gene

(5) SIMAP similar genes for PPP1R13L Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with PPP1R13L: view

Variants for PPP1R13L Gene

Sequence variations from dbSNP and Humsavar for PPP1R13L Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1005165 -- 45,405,792(+) GTCAC(C/T)CTGTC intron-variant, upstream-variant-2KB
rs1005166 -- 45,405,937(+) TCAGG(C/T)CCCTT intron-variant, upstream-variant-2KB
rs10401973 -- 45,400,148(+) CTCTA(C/T)CAGAT intron-variant
rs10402393 -- 45,400,339(+) GCCAG(C/T)ACCAT intron-variant
rs10402584 -- 45,400,270(+) CCAGG(G/T)GTGGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PPP1R13L Gene

Variant ID Type Subtype PubMed ID
dgv1054e212 CNV gain 25503493
dgv1788n106 CNV deletion 24896259
dgv3606n100 CNV gain 25217958
dgv648e199 CNV deletion 23128226
esv3556461 CNV deletion 23714750
esv3644502 CNV gain 21293372
esv3644505 CNV loss 21293372
esv6828 CNV loss 19470904
nsv1063547 CNV gain 25217958
nsv1109201 CNV deletion 24896259
nsv1151840 CNV deletion 26484159
nsv428365 CNV gain+loss 18775914
nsv442466 CNV gain 18776908
nsv458711 CNV gain 19166990
nsv579867 CNV gain 21841781
nsv833844 CNV loss 17160897
nsv833845 CNV loss 17160897
nsv833846 CNV loss 17160897
nsv954623 CNV deletion 24416366

Variation tolerance for PPP1R13L Gene

Residual Variation Intolerance Score: 13.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.82; 34.28% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PPP1R13L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PPP1R13L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PPP1R13L Gene

Disorders for PPP1R13L Gene

Relevant External Links for PPP1R13L

Genetic Association Database (GAD)
PPP1R13L
Human Genome Epidemiology (HuGE) Navigator
PPP1R13L
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PPP1R13L

No disorders were found for PPP1R13L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PPP1R13L Gene

Publications for PPP1R13L Gene

  1. Identification of a novel inhibitor of nuclear factor-kappaB, RelA- associated inhibitor. (PMID: 10336463) Yang J.-P. … Okamoto T. (J. Biol. Chem. 1999) 2 3 4 22 64
  2. A haplotype of polymorphisms in ASE-1, RAI and ERCC1 and the effects of tobacco smoking and alcohol consumption on risk of colorectal cancer: a Danish prospective case-cohort study. (PMID: 18289367) Hansen R.D. … Vogel U. (BMC Cancer 2008) 3 22 46 64
  3. Linkage disequilibrium mapping of a breast cancer susceptibility locus near RAI/PPP1R13L/iASPP. (PMID: 18588689) NexA … rglum A.D. (BMC Med. Genet. 2008) 3 22 46 64
  4. The N-terminus of a novel isoform of human iASPP is required for its cytoplasmic localization. (PMID: 15489900) Slee E.A. … Lu X. (Oncogene 2004) 3 4 22 64
  5. iASPP oncoprotein is a key inhibitor of p53 conserved from worm to human. (PMID: 12524540) Bergamaschi D. … Lu X. (Nat. Genet. 2003) 3 4 22 64

Products for PPP1R13L Gene

Sources for PPP1R13L Gene

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