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Aliases for PPM1L Gene

Aliases for PPM1L Gene

  • Protein Phosphatase, Mg2+/Mn2+ Dependent 1L 2 3 5
  • Protein Phosphatase, Mg2+/Mn2+ Dependent, 1L 2 3
  • Protein Phosphatase 2C Epsilon Isoform 2 3
  • Protein Phosphatase 2C Isoform Epsilon 3 4
  • PP2C-Epsilon 3 4
  • EC 3.1.3.16 4 63
  • PP2CE 3 4
  • Protein Phosphatase 1 (Formerly 2C)-Like 2
  • Protein Phosphatase 1-Like 4
  • PP2C Epsilon 3
  • PP2Cepsilon 2
  • PPM1-LIKE 3
  • EC 3.1.3 63

External Ids for PPM1L Gene

Previous GeneCards Identifiers for PPM1L Gene

  • GC03P161880
  • GC03P162042
  • GC03P160473
  • GC03P157872

Summaries for PPM1L Gene

Entrez Gene Summary for PPM1L Gene

  • The protein encoded by this gene is a magnesium or manganese-requiring phosphatase that is involved in several signaling pathways. The encoded protein downregulates apoptosis signal-regulating kinase 1, a protein that initiates a signaling cascade that leads to apoptosis when cells are subjected to cytotoxic stresses. This protein also is an endoplasmic reticulum transmembrane protein that helps regulate ceramide transport from the endoplasmic reticulum to the Golgi apparatus. Finally, this gene may be involved in adiposity since it is upregulated in adipose tissues. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2015]

GeneCards Summary for PPM1L Gene

PPM1L (Protein Phosphatase, Mg2+/Mn2+ Dependent 1L) is a Protein Coding gene. Among its related pathways are Metabolism and AMPK Enzyme Complex Pathway. GO annotations related to this gene include protein serine/threonine phosphatase activity. An important paralog of this gene is PPM1E.

UniProtKB/Swiss-Prot for PPM1L Gene

  • Acts as a suppressor of the SAPK signaling pathways by associating with and dephosphorylating MAP3K7/TAK1 and MAP3K5, and by attenuating the association between MAP3K7/TAK1 and MAP2K4 or MAP2K6.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PPM1L Gene

Genomics for PPM1L Gene

Regulatory Elements for PPM1L Gene

Promoters for PPM1L Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around PPM1L on UCSC Golden Path with GeneCards custom track

Genomic Location for PPM1L Gene

Chromosome:
3
Start:
160,755,532 bp from pter
End:
161,078,907 bp from pter
Size:
323,376 bases
Orientation:
Plus strand

Genomic View for PPM1L Gene

Genes around PPM1L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PPM1L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PPM1L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PPM1L Gene

Proteins for PPM1L Gene

  • Protein details for PPM1L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SGD2-PPM1L_HUMAN
    Recommended name:
    Protein phosphatase 1L
    Protein Accession:
    Q5SGD2
    Secondary Accessions:
    • Q2M3J2
    • Q96NM7

    Protein attributes for PPM1L Gene

    Size:
    360 amino acids
    Molecular mass:
    41053 Da
    Cofactor:
    Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Name=Mn(2+); Xref=ChEBI:CHEBI:29035;
    Quaternary structure:
    • Interacts with MAP3K7/TAK1 (By similarity). Interacts with MAP3K5.

    Alternative splice isoforms for PPM1L Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PPM1L Gene

Proteomics data for PPM1L Gene at MOPED

Selected DME Specific Peptides for PPM1L Gene

Post-translational modifications for PPM1L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for PPM1L Gene

Antibody Products

  • R&D Systems Antibodies for PPM1L (PP2C epsilon/PPM1L)
  • Santa Cruz Biotechnology (SCBT) Antibodies for PPM1L

Domains & Families for PPM1L Gene

Gene Families for PPM1L Gene

Protein Domains for PPM1L Gene

Suggested Antigen Peptide Sequences for PPM1L Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5SGD2

UniProtKB/Swiss-Prot:

PPM1L_HUMAN :
  • Contains 1 PPM-type phosphatase domain.
  • Belongs to the PP2C family.
Domain:
  • Contains 1 PPM-type phosphatase domain.
Family:
  • Belongs to the PP2C family.
genes like me logo Genes that share domains with PPM1L: view

Function for PPM1L Gene

Molecular function for PPM1L Gene

UniProtKB/Swiss-Prot CatalyticActivity:
[a protein]-serine/threonine phosphate + H(2)O = [a protein]-serine/threonine + phosphate.
UniProtKB/Swiss-Prot Function:
Acts as a suppressor of the SAPK signaling pathways by associating with and dephosphorylating MAP3K7/TAK1 and MAP3K5, and by attenuating the association between MAP3K7/TAK1 and MAP2K4 or MAP2K6.

Enzyme Numbers (IUBMB) for PPM1L Gene

Gene Ontology (GO) - Molecular Function for PPM1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IEA --
genes like me logo Genes that share ontologies with PPM1L: view
genes like me logo Genes that share phenotypes with PPM1L: view

Animal Models for PPM1L Gene

MGI Knock Outs for PPM1L:

Animal Model Products

miRNA for PPM1L Gene

miRTarBase miRNAs that target PPM1L

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for PPM1L Gene

Localization for PPM1L Gene

Subcellular locations from UniProtKB/Swiss-Prot for PPM1L Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PPM1L Gene COMPARTMENTS Subcellular localization image for PPM1L gene
Compartment Confidence
endoplasmic reticulum 5
extracellular 5
cytosol 3
nucleus 3
golgi apparatus 2
mitochondrion 2
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for PPM1L Gene

Pathways & Interactions for PPM1L Gene

genes like me logo Genes that share pathways with PPM1L: view

Pathways by source for PPM1L Gene

SIGNOR curated interactions for PPM1L Gene

Inactivates:

Gene Ontology (GO) - Biological Process for PPM1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0044281 small molecule metabolic process TAS --
genes like me logo Genes that share ontologies with PPM1L: view

Drugs & Compounds for PPM1L Gene

(2) Drugs for PPM1L Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Manganese Pharma 32
Magnesium Nutra 0

(2) Additional Compounds for PPM1L Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
phosphoric acid
  • Acide phosphorique (FRENCH)
  • Acido fosforico [Italian]
  • Acidum phosphoricum
  • Diphosphate tetrasodium
  • Fosforzuuroplossingen [Dutch]
7664-38-2
Water
  • Dihydrogen oxide
  • Steam
7732-18-5
genes like me logo Genes that share compounds with PPM1L: view

Transcripts for PPM1L Gene

Unigene Clusters for PPM1L Gene

Protein phosphatase, Mg2+/Mn2+ dependent, 1L:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PPM1L Gene

No ASD Table

Relevant External Links for PPM1L Gene

GeneLoc Exon Structure for
PPM1L
ECgene alternative splicing isoforms for
PPM1L

Expression for PPM1L Gene

mRNA expression in normal human tissues for PPM1L Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PPM1L Gene

This gene is overexpressed in Muscle - Skeletal (x4.2).

Protein differential expression in normal tissues from HIPED for PPM1L Gene

This gene is overexpressed in Peripheral blood mononuclear cells (18.9), Frontal cortex (13.7), Liver (8.2), and Islet of Langerhans (7.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for PPM1L Gene



SOURCE GeneReport for Unigene cluster for PPM1L Gene Hs.389027

mRNA Expression by UniProt/SwissProt for PPM1L Gene

Q5SGD2-PPM1L_HUMAN
Tissue specificity: Ubiquitous. Highly expressed in heart, placenta, lung, liver, kidney and pancreas.
genes like me logo Genes that share expression patterns with PPM1L: view

Protein tissue co-expression partners for PPM1L Gene

Primer Products

In Situ Assay Products

Orthologs for PPM1L Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for PPM1L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PPM1L 35
  • 99.54 (n)
  • 100 (a)
PPM1L 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia PPM1L 36
  • 99 (a)
OneToOne
PPM1L 35
  • 94.07 (n)
  • 99.17 (a)
dog
(Canis familiaris)
Mammalia PPM1L 35
  • 95.19 (n)
  • 99.72 (a)
PPM1L 36
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ppm1l 16
Ppm1l 36
  • 99 (a)
OneToOne
Ppm1l 35
  • 91.2 (n)
  • 99.17 (a)
oppossum
(Monodelphis domestica)
Mammalia PPM1L 36
  • 98 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PPM1L 36
  • 83 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ppm1l 35
  • 91.02 (n)
  • 99.44 (a)
chicken
(Gallus gallus)
Aves PPM1L 36
  • 98 (a)
OneToOne
PPM1L 35
  • 84.72 (n)
  • 97.5 (a)
lizard
(Anolis carolinensis)
Reptilia PPM1L 36
  • 97 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.26315 35
tropical clawed frog
(Silurana tropicalis)
Amphibia ppm1l 35
  • 82.87 (n)
  • 93.06 (a)
Str.16930 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.6639 35
zebrafish
(Danio rerio)
Actinopterygii Dr.7261 35
ppm1la 35
  • 77.75 (n)
  • 88.27 (a)
ppm1la 36
  • 88 (a)
OneToMany
ppm1lb 36
  • 70 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008536 35
  • 55.08 (n)
  • 51.83 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG7115 35
  • 52.34 (n)
  • 47.04 (a)
CG7115 36
  • 30 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PTC1 36
  • 31 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G24940 35
  • 50.28 (n)
  • 47.11 (a)
rice
(Oryza sativa)
Liliopsida Os06g0698300 35
  • 50.14 (n)
  • 45.45 (a)
Species with no ortholog for PPM1L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for PPM1L Gene

ENSEMBL:
Gene Tree for PPM1L (if available)
TreeFam:
Gene Tree for PPM1L (if available)

Paralogs for PPM1L Gene

Paralogs for PPM1L Gene

Pseudogenes.org Pseudogenes for PPM1L Gene

genes like me logo Genes that share paralogs with PPM1L: view

Variants for PPM1L Gene

Sequence variations from dbSNP and Humsavar for PPM1L Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs13326359 - 161,068,858(+) TCCTG(G/T)CCATG reference, missense
rs13256 -- 161,078,717(+) TGCAC(A/G)GTCAC utr-variant-3-prime
rs718757 -- 160,816,437(+) CTAAG(A/G)AAATG intron-variant
rs779055 -- 160,794,443(+) AATTT(C/T)AGGCA intron-variant
rs779057 -- 160,779,584(+) gtggc(A/G)ccatc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PPM1L Gene

Variant ID Type Subtype PubMed ID
esv2674643 CNV Deletion 23128226
esv2476287 CNV Deletion 19546169
esv2726116 CNV Deletion 23290073
esv2121069 CNV Deletion 18987734
esv994945 CNV Deletion 20482838
esv2726118 CNV Deletion 23290073
esv1469152 CNV Deletion 17803354
esv2647987 CNV Deletion 19546169
esv269656 CNV Insertion 20981092
esv32963 CNV Gain 17666407
esv2519831 CNV Deletion 19546169
nsv519474 CNV Loss 19592680
esv2665188 CNV Deletion 23128226
esv1495071 CNV Insertion 17803354
nsv507133 CNV Insertion 20534489
esv24553 CNV Loss 19812545
esv2672481 CNV Deletion 23128226
nsv517658 CNV Loss 19592680
esv2657324 CNV Deletion 23128226
nsv518915 CNV Loss 19592680

Variation tolerance for PPM1L Gene

Residual Variation Intolerance Score: 32.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.30; 25.95% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PPM1L Gene

HapMap Linkage Disequilibrium report
PPM1L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PPM1L Gene

Disorders for PPM1L Gene

Relevant External Links for PPM1L

Genetic Association Database (GAD)
PPM1L
Human Genome Epidemiology (HuGE) Navigator
PPM1L
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PPM1L

No disorders were found for PPM1L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PPM1L Gene

Publications for PPM1L Gene

  1. Regulation of the interleukin-1-induced signaling pathways by a novel member of the protein phosphatase 2C family (PP2Cepsilon). (PMID: 12556533) Li M.G. … Tamura S. (J. Biol. Chem. 2003) 2 3 23 67
  2. Protein phosphatase 2Cepsilon is an endoplasmic reticulum integral membrane protein that dephosphorylates the ceramide transport protein CERT to enhance its association with organelle membranes. (PMID: 18165232) Saito S. … Kobayashi T. (J. Biol. Chem. 2008) 3 23
  3. Molecular cloning and characterization of a novel human protein phosphatase 2C cDNA (PP2C epsilon). (PMID: 15560375) Jin F. … Mao Y. (Mol. Biol. Rep. 2004) 3 23
  4. Genome-wide analysis of methotrexate pharmacogenomics in rheumatoid arthritis shows multiple novel risk variants and leads for TYMS regulation. (PMID: 24583629) Senapati S. … Thelma B.K. (Pharmacogenet. Genomics 2014) 3
  5. Acyl-CoA binding domain containing 3 (ACBD3) recruits the protein phosphatase PPM1L to ER-Golgi membrane contact sites. (PMID: 22796112) Shinoda Y. … Kobayashi T. (FEBS Lett. 2012) 3

Products for PPM1L Gene

Sources for PPM1L Gene

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