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Aliases for PPM1F Gene

Aliases for PPM1F Gene

  • Protein Phosphatase, Mg2+/Mn2+ Dependent 1F 2 3 5
  • Ca(2+)/Calmodulin-Dependent Protein Kinase Phosphatase 2 3 4
  • Partner Of PIX 2 2 3 4
  • Protein Phosphatase 1F (PP2C Domain Containing) 2 3
  • CaM-Kinase Phosphatase 3 4
  • Protein Fem-2 Homolog 3 4
  • CaMKPase 3 4
  • HFEM-2 3 4
  • POPX2 3 4
  • Protein Phosphatase, Mg2+/Mn2+ Dependent, 1F 2
  • Protein Phosphatase 1F 3
  • PP2C Phosphatase 3
  • EC 3.1.3.16 4
  • KIAA0015 4
  • CAMKP 3
  • FEM-2 3

External Ids for PPM1F Gene

Previous GeneCards Identifiers for PPM1F Gene

  • GC22M018973
  • GC22M020598
  • GC22M022273
  • GC22M005230

Summaries for PPM1F Gene

Entrez Gene Summary for PPM1F Gene

  • The protein encoded by this gene is a member of the PP2C family of Ser/Thr protein phosphatases. PP2C family members are known to be negative regulators of cell stress response pathways. This phosphatase can interact with Rho guanine nucleotide exchange factors (PIX), and thus block the effects of p21-activated kinase 1 (PAK), a protein kinase mediating biological effects downstream of Rho GTPases. Calcium/calmodulin-dependent protein kinase II gamma (CAMK2G/CAMK-II) is found to be one of the substrates of this phosphatase. The overexpression of this phosphatase or CAMK2G has been shown to mediate caspase-dependent apoptosis. An alternatively spliced transcript variant has been identified, but its full-length nature has not been determined. [provided by RefSeq, Jul 2008]

GeneCards Summary for PPM1F Gene

PPM1F (Protein Phosphatase, Mg2+/Mn2+ Dependent 1F) is a Protein Coding gene. Among its related pathways are Regulation of CFTR activity (norm and CF) and Development Dopamine D2 receptor transactivation of EGFR. GO annotations related to this gene include phosphatase activity and calmodulin-dependent protein phosphatase activity. An important paralog of this gene is PPM1E.

UniProtKB/Swiss-Prot for PPM1F Gene

  • Dephosphorylates and concomitantly deactivates CaM-kinase II activated upon autophosphorylation, and CaM-kinases IV and I activated upon phosphorylation by CaM-kinase kinase. Promotes apoptosis.

Gene Wiki entry for PPM1F Gene

Additional gene information for PPM1F Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PPM1F Gene

Genomics for PPM1F Gene

Regulatory Elements for PPM1F Gene

Enhancers for PPM1F Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H021936 1.7 FANTOM5 ENCODE dbSUPER 19.6 +8.1 8131 17 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 ZNF143 ENSG00000224086 TOP3BP1 TOP3B LZTR1 IGLV5-52 PPIL2 ENSG00000234630 ENSG00000272779 THAP7 THAP7-AS1
GH22H021814 1.8 FANTOM5 Ensembl ENCODE dbSUPER 16 +135.6 135562 6 PKNOX1 PTBP1 BMI1 BATF SCRT2 FOS ATF7 ETV6 RUNX3 IKZF2 ENSG00000224086 LZTR1 PPM1F ENSG00000272779 IGLV5-52 ENSG00000234630 PPIL2 YPEL1 TOP3B THAP7
GH22H021760 1.2 ENCODE dbSUPER 21.6 +188.6 188591 7 HDGF PKNOX1 SIN3A BMI1 FEZF1 BATF ZNF366 SCRT2 FOS ATF7 ENSG00000224086 PPM1F TOP3B TOP3BP1 YPEL1 RNA5SP493
GH22H021927 0.6 dbSUPER 29.8 +24.5 24535 1 TSC22D4 HDAC8 NR2F2 POLR2A ID3 HNF4A ZNF24 HMGN3 ENSG00000224086 PPM1F TOP3B YPEL1 GC22P021950
GH22H021712 1.5 FANTOM5 Ensembl ENCODE 11.9 +239.4 239448 1 RB1 TBL1XR1 ZSCAN4 INSM2 KLF17 RAD21 GATA2 SCRT2 ZNF143 SMARCA5 PPIL2 IGLV5-52 YPEL1 TOP3B LZTR1 ENSG00000224086 PPM1F ENSG00000234630 RN7SL280P GC22M021698
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PPM1F on UCSC Golden Path with GeneCards custom track

Promoters for PPM1F Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000144076 378 1001 ATF1 ARID4B SIN3A GLIS2 ZNF143 ZNF207 RUNX3 SP3 SP5 ZC3H11A

Genomic Location for PPM1F Gene

Chromosome:
22
Start:
21,919,419 bp from pter
End:
21,952,878 bp from pter
Size:
33,460 bases
Orientation:
Minus strand

Genomic View for PPM1F Gene

Genes around PPM1F on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PPM1F Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PPM1F Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PPM1F Gene

Proteins for PPM1F Gene

  • Protein details for PPM1F Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P49593-PPM1F_HUMAN
    Recommended name:
    Protein phosphatase 1F
    Protein Accession:
    P49593
    Secondary Accessions:
    • A8K6G3
    • B7Z2C3
    • Q96PM2

    Protein attributes for PPM1F Gene

    Size:
    454 amino acids
    Molecular mass:
    49831 Da
    Cofactor:
    Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Name=Mn(2+); Xref=ChEBI:CHEBI:29035;
    Quaternary structure:
    • Associates with FEM1B.
    SequenceCaution:
    • Sequence=BAA02803.2; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for PPM1F Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PPM1F Gene

Post-translational modifications for PPM1F Gene

  • Ubiquitination at Lys334
  • Modification sites at PhosphoSitePlus

Other Protein References for PPM1F Gene

No data available for DME Specific Peptides for PPM1F Gene

Domains & Families for PPM1F Gene

Gene Families for PPM1F Gene

HGNC:
Human Protein Atlas (HPA):
  • Enzymes
  • Plasma proteins
  • Predicted intracellular proteins

Protein Domains for PPM1F Gene

Graphical View of Domain Structure for InterPro Entry

P49593

UniProtKB/Swiss-Prot:

PPM1F_HUMAN :
  • Belongs to the PP2C family.
Family:
  • Belongs to the PP2C family.
genes like me logo Genes that share domains with PPM1F: view

Function for PPM1F Gene

Molecular function for PPM1F Gene

UniProtKB/Swiss-Prot CatalyticActivity:
[a protein]-serine/threonine phosphate + H(2)O = [a protein]-serine/threonine + phosphate.
UniProtKB/Swiss-Prot Function:
Dephosphorylates and concomitantly deactivates CaM-kinase II activated upon autophosphorylation, and CaM-kinases IV and I activated upon phosphorylation by CaM-kinase kinase. Promotes apoptosis.

Enzyme Numbers (IUBMB) for PPM1F Gene

Phenotypes From GWAS Catalog for PPM1F Gene

Gene Ontology (GO) - Molecular Function for PPM1F Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004721 phosphoprotein phosphatase activity IEA --
GO:0004722 protein serine/threonine phosphatase activity IMP,IEA 20016286
GO:0005515 protein binding IPI 11559703
GO:0016787 hydrolase activity IEA --
GO:0016791 phosphatase activity IDA 15140879
genes like me logo Genes that share ontologies with PPM1F: view
genes like me logo Genes that share phenotypes with PPM1F: view

Animal Models for PPM1F Gene

MGI Knock Outs for PPM1F:

Animal Model Products

  • Taconic Biosciences Mouse Models for PPM1F

CRISPR Products

miRNA for PPM1F Gene

miRTarBase miRNAs that target PPM1F

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for PPM1F
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for PPM1F Gene

Localization for PPM1F Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PPM1F gene
Compartment Confidence
cytosol 5
nucleus 3
plasma membrane 2
cytoskeleton 1
mitochondrion 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nucleoplasm (2)
  • Plasma membrane (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for PPM1F Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol IDA,IEA 11559703
GO:0043234 protein complex IDA 11864573
GO:0048471 perinuclear region of cytoplasm IEA --
genes like me logo Genes that share ontologies with PPM1F: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for PPM1F Gene

Pathways & Interactions for PPM1F Gene

genes like me logo Genes that share pathways with PPM1F: view

Pathways by source for PPM1F Gene

SIGNOR curated interactions for PPM1F Gene

Inactivates:

Gene Ontology (GO) - Biological Process for PPM1F Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006469 negative regulation of protein kinase activity IDA 11864573
GO:0006470 protein dephosphorylation IEA --
GO:0006915 apoptotic process IEA --
GO:0010628 positive regulation of gene expression IMP 20016286
GO:0010634 positive regulation of epithelial cell migration IMP 20016286
genes like me logo Genes that share ontologies with PPM1F: view

Drugs & Compounds for PPM1F Gene

(7) Drugs for PPM1F Gene - From: HMDB and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Phosphoric acid Approved Pharma 0
Water Approved Pharma 0
Manganese Approved Nutra 35
calcium Nutra 0
Magnesium Nutra 0

(1) Additional Compounds for PPM1F Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Phosphate
  • NFB Orthophosphate
  • O-Phosphoric acid
  • Ortho-phosphate
  • Orthophosphate (PO43-)
  • Orthophosphate(3-)
14265-44-2
genes like me logo Genes that share compounds with PPM1F: view

Transcripts for PPM1F Gene

Unigene Clusters for PPM1F Gene

Protein phosphatase, Mg2+/Mn2+ dependent, 1F:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for PPM1F
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for PPM1F Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c · 5d ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b · 12c
SP1: - - - - - - - -
SP2: - - -
SP3: - - - - - -
SP4: - - - - -
SP5: - - - - - - -
SP6: -
SP7: - -
SP8: -

Relevant External Links for PPM1F Gene

GeneLoc Exon Structure for
PPM1F
ECgene alternative splicing isoforms for
PPM1F

Expression for PPM1F Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PPM1F Gene

mRNA differential expression in normal tissues according to GTEx for PPM1F Gene

This gene is overexpressed in Whole Blood (x6.7).

Protein differential expression in normal tissues from HIPED for PPM1F Gene

This gene is overexpressed in Peripheral blood mononuclear cells (10.3) and Lymph node (9.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for PPM1F Gene



Protein tissue co-expression partners for PPM1F Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of PPM1F Gene:

PPM1F

SOURCE GeneReport for Unigene cluster for PPM1F Gene:

Hs.112728

Evidence on tissue expression from TISSUES for PPM1F Gene

  • Nervous system(4.8)
  • Bone marrow(4.2)
genes like me logo Genes that share expression patterns with PPM1F: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for PPM1F Gene

Orthologs for PPM1F Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for PPM1F Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PPM1F 33 34
  • 99.41 (n)
dog
(Canis familiaris)
Mammalia PPM1F 33 34
  • 84.62 (n)
mouse
(Mus musculus)
Mammalia Ppm1f 33 16 34
  • 82.96 (n)
rat
(Rattus norvegicus)
Mammalia Ppm1f 33
  • 82.52 (n)
cow
(Bos Taurus)
Mammalia PPM1F 33 34
  • 80.54 (n)
oppossum
(Monodelphis domestica)
Mammalia PPM1F 34
  • 58 (a)
OneToOne
chicken
(Gallus gallus)
Aves PPM1F 33 34
  • 63.1 (n)
lizard
(Anolis carolinensis)
Reptilia PPM1F 34
  • 50 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ppm1f 33
  • 59.77 (n)
zebrafish
(Danio rerio)
Actinopterygii ppm1f 33 34
  • 55.94 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP002147 33
  • 51.14 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG10376 33 34
  • 49.42 (n)
worm
(Caenorhabditis elegans)
Secernentea fem-2 34
  • 22 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PTC1 34
  • 32 (a)
OneToMany
rice
(Oryza sativa)
Liliopsida Os06g0526800 33
  • 48.79 (n)
Species where no ortholog for PPM1F was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PPM1F Gene

ENSEMBL:
Gene Tree for PPM1F (if available)
TreeFam:
Gene Tree for PPM1F (if available)

Paralogs for PPM1F Gene

Paralogs for PPM1F Gene

(3) SIMAP similar genes for PPM1F Gene using alignment to 8 proteins:

genes like me logo Genes that share paralogs with PPM1F: view

Variants for PPM1F Gene

Sequence variations from dbSNP and Humsavar for PPM1F Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
VAR_036520 A colorectal cancer sample
VAR_036521 A breast cancer sample
rs1000031883 -- 21,934,353(+) AGCAC(A/G)TCAAC intron-variant
rs1000126366 -- 21,951,982(+) CCGTG(C/G)TGAGA intron-variant
rs1000198697 -- 21,920,589(+) GTGCT(C/G)GCACC utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for PPM1F Gene

Variant ID Type Subtype PubMed ID
dgv20e196 CNV duplication 17116639
dgv22e196 CNV deletion 17116639
dgv23e196 CNV deletion 17116639
dgv4492n100 CNV gain 25217958
dgv4493n100 CNV gain 25217958
dgv4494n100 CNV gain 25217958
dgv4495n100 CNV gain 25217958
dgv4496n100 CNV loss 25217958
dgv7997n54 CNV gain 21841781
esv2422338 CNV deletion 17116639
esv2422374 CNV duplication 17116639
esv2422476 CNV deletion 17116639
esv2758826 CNV gain+loss 17122850
esv2763701 CNV gain+loss 21179565
esv3647323 CNV loss 21293372
esv3893447 CNV gain 25118596
nsv1056286 CNV gain 25217958
nsv1058144 CNV gain 25217958
nsv1059265 CNV gain 25217958
nsv1062641 CNV gain 25217958
nsv3566 CNV insertion 18451855
nsv469782 CNV gain 16826518
nsv516394 CNV gain+loss 19592680
nsv7350 OTHER inversion 18451855
nsv828966 CNV loss 20364138
nsv834146 CNV gain 17160897

Variation tolerance for PPM1F Gene

Residual Variation Intolerance Score: 56.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.36; 76.88% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PPM1F Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PPM1F

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PPM1F Gene

Disorders for PPM1F Gene

Relevant External Links for PPM1F

Genetic Association Database (GAD)
PPM1F
Human Genome Epidemiology (HuGE) Navigator
PPM1F
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PPM1F

No disorders were found for PPM1F Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PPM1F Gene

Publications for PPM1F Gene

  1. The p21-activated kinase PAK is negatively regulated by POPX1 and POPX2, a pair of serine/threonine phosphatases of the PP2C family. (PMID: 11864573) Koh CG … Lim L (Current biology : CB 2002) 2 3 4 22 60
  2. The Caenorhabditis elegans sex-determining protein FEM-2 and its human homologue, hFEM-2, are Ca2+/calmodulin-dependent protein kinase phosphatases that promote apoptosis. (PMID: 11559703) Tan KM … Yu VC (The Journal of biological chemistry 2001) 2 3 4 22 60
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 45 60
  4. Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies. (PMID: 18839057) Lesch KP … Jacob C (Journal of neural transmission (Vienna, Austria : 1996) 2008) 3 45 60
  5. Functional interactions between phosphatase POPX2 and mDia modulate RhoA pathways. (PMID: 18230650) Xie Y … Koh CG (Journal of cell science 2008) 3 22 60

Products for PPM1F Gene

Sources for PPM1F Gene

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