PPIAL4D Gene
protein-coding GIFtS: 28
GCID: GC01M148202 (predicted)
|
|
peptidylprolyl isomerase A (cyclophilin A)-like 4D
| |
Aliases
for PPIAL4D gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Peptidylprolyl Isomerase A (Cyclophilin A)-Like 4D1 2 | | PPIase A-Like 4D2 3 | | Peptidyl-Prolyl Cis-Trans Isomerase A-Like 4D2 | | EC 5.2.1.83 |
Export aliases for PPIAL4D gene to outside databasesPrevious GC identifer: GC01M146569 |
Summaries
for PPIAL4D gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
UniProtKB/Swiss-Prot: PAL4D_HUMAN, F5H284Function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidicpeptide bonds in oligopeptides (By similarity)
|
Genomic Views
for PPIAL4D gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000001.10 NC_018912.1 NT_113799.1
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for PPIAL4D
Other transcription factors
Search SABiosciences Chromatin IP Primers for PPIAL4D
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PPIAL4D |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 1q21.2 Ensembl cytogenetic band: 1q21.2 HGNC cytogenetic band: 1q21PPIAL4D Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M148202: view genomic region
(about GC identifiers)
Start:
|
148,201,752 bp from pter |
End:
|
148,202,536 bp from pter |
Size:
|
785 bases |
Orientation:
|
minus strand |
|
Proteins
for PPIAL4D gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: PAL4D_HUMAN, F5H284 (See
protein sequence)Recommended Name: Peptidyl-prolyl cis-trans isomerase A-like 4D Size: 164 amino acids; 18167 Da
Subcellular location: Cytoplasm (By similarity)
Miscellaneous: It is one of seven related genes or pseudogenes found in a cluster, thought to result from geneduplication, on chromosome 1Explore the universe of human proteins at neXtProt for PPIAL4D: NX_F5H284
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_F5H284
PPIAL4D Protein expression data from MOPED and PaxDb: --
REFSEQ proteins: NP_001157733.1
ENSEMBL proteins: ENSP00000439444
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005737 | cytoplasm |
IEA | -- |
PPIAL4D for ontologies About GeneDecksing
PPIAL4D Antibody Products:
Assay Products for PPIAL4D: |
Protein
Domains /
Families
for PPIAL4D gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
PPIAL4D for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry F5H284ProtoNet protein and cluster: F5H284 UniProtKB/Swiss-Prot: PAL4D_HUMAN, F5H284Similarity: Belongs to the cyclophilin-type PPIase family. PPIase A subfamilySimilarity: Contains 1 PPIase cyclophilin-type domain |
Function
for PPIAL4D gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: PAL4D_HUMAN, F5H284Function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidicpeptide bonds in oligopeptides (By similarity)Catalytic activity: Peptidylproline (omega=180) = peptidylproline (omega=0)Enzyme Number (IUBMB): EC 5.2.1.81
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for PPIAL4D
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for PPIAL4D
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: PPIAL4D (NM_001164261) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PPIAL4D | |  | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat PPIAL4D |
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity |
IEA | -- |
PPIAL4D for ontologies About GeneDecksing
|
Pathways & Interactions
for PPIAL4D gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for PPIAL4D
Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006457 | protein folding |
IEA | -- |
PPIAL4D for ontologies About GeneDecksing
|
Drugs & Compounds
for PPIAL4D gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for PPIAL4D
Search CenterWatch for drugs/clinical trials and news about PPIAL4D / PAL4D
|
Transcripts
for PPIAL4D gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for PPIAL4D gene: NM_001164261.1 Unigene Cluster for PPIAL4D: Peptidylprolyl isomerase A (cyclophilin A)-like 4D Hs.730589 Unigene Representative Sequence: NM_0011642611 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000544708(uc010pag.2)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for PPIAL4D
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for PPIAL4D
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: PPIAL4D (NM_001164261) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PPIAL4D | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat PPIAL4D |
GeneLoc Exon Structure
|
Expression
for PPIAL4D gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| PPIAL4D expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
SOURCE GeneReport for Unigene cluster: Hs.730589
SABiosciences Custom PCR Arrays for PPIAL4D
Primer
Products: | | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat PPIAL4D | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat PPIAL4D | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat PPIAL4D |
Orthologs
for PPIAL4D gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for PPIAL4D gene from 7/20 species (see all 20) About this table
ENSEMBL Gene Tree for PPIAL4D (if available)
TreeFam Gene Tree for PPIAL4D (if available) |
Paralogs
for PPIAL4D gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for PPIAL4D gene
- PPIAL4F PPIAL4E PPIAL4C1 2 PPIAL4A1 2 PPIAL4B1 2 PPIAL4G1 2 PPIE2 PPIF2
- PPIA2
PPIAL4D for paralogs About GeneDecksing
|
Genomic Variants
for PPIAL4D gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 1 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for PPIAL4D (148201752 - 148202536 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 16 variations for PPIAL4D
15/16 CNVs (see all 16): 69999 48119 8924 3313 6785 48120 2326 37600 8328 84544 69978 48117 69979 34420 8329 | SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for PPIAL4D gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
PPIAL4D for disorders About GeneDecksing
1  disease for PPIAL4D: About MalaCardsmalaria
Export disorders for PPIAL4D gene to outside databases
|
Publications
for PPIAL4D gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed article for PPIAL4D gene integrated from 9 sources:
(articles sorted by number of sources associating them with PPIAL4D) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)2 Gregory S.G.... Bentley D.R. (2006)
|
External Searches for PPIAL4D gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing PPIAL4D gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing PPIAL4D gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing PPIAL4D gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for PPIAL4D | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for PPIAL4D gene:
Search GeneIP for patents involving PPIAL4D
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for PPIAL4D gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 |
| | | | |
 |
 |
|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat PPIAL4D | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing PPIAL4D | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PPIAL4D | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat PPIAL4D | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat PPIAL4D | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat PPIAL4D |
| |
 |  |  |  | |
| | | | Search Tocris compounds for PPIAL4D |
| |  |  |  |  | | | | |
 |
 |
 |
 | | | | |  |  |  | | | | Search ThermoFisher Antibodies for PPIAL4D |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat PPIAL4D |
|
|
|
|
