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Aliases for PPIAL4C Gene

Aliases for PPIAL4C Gene

  • Peptidylprolyl Isomerase A Like 4C 2 3
  • Peptidylprolyl Isomerase A (Cyclophilin A)-Like 4C 3 5
  • PPIase A-Like 4C 3 4
  • Cyclophilin Homolog Overexpressed In Liver Cancer 3
  • Chromosome One-Amplified Sequence 2 3
  • Chromosome 1-Amplified Sequence 2 3
  • PPIase A-Like 4A 3
  • EC 5.2.1.8 4
  • COAS-2 3

External Ids for PPIAL4C Gene

Previous GeneCards Identifiers for PPIAL4C Gene

  • GC01P147821

Summaries for PPIAL4C Gene

GeneCards Summary for PPIAL4C Gene

PPIAL4C (Peptidylprolyl Isomerase A Like 4C) is a Protein Coding gene. GO annotations related to this gene include peptidyl-prolyl cis-trans isomerase activity. An important paralog of this gene is PPIAL4A.

UniProtKB/Swiss-Prot for PPIAL4C Gene

  • PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PPIAL4C Gene

Genomics for PPIAL4C Gene

Regulatory Elements for PPIAL4C Gene

Enhancers for PPIAL4C Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around PPIAL4C on UCSC Golden Path with GeneCards custom track

Genomic Location for PPIAL4C Gene

Chromosome:
1
Start:
149,583,823 bp from pter
End:
149,584,607 bp from pter
Size:
785 bases
Orientation:
Plus strand

Genomic View for PPIAL4C Gene

Genes around PPIAL4C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PPIAL4C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PPIAL4C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PPIAL4C Gene

Proteins for PPIAL4C Gene

  • Protein details for PPIAL4C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A0B4J2A2-PAL4C_HUMAN
    Recommended name:
    Peptidyl-prolyl cis-trans isomerase A-like 4C
    Protein Accession:
    A0A0B4J2A2
    Secondary Accessions:
    • A1L431
    • A2BFH1

    Protein attributes for PPIAL4C Gene

    Size:
    164 amino acids
    Molecular mass:
    18156 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • It is one of six related genes or pseudogenes found in a cluster, thought to result from gene duplication, on chromosome 1.

neXtProt entry for PPIAL4C Gene

Proteomics data for PPIAL4C Gene at MOPED

Post-translational modifications for PPIAL4C Gene

No Post-translational modifications

Other Protein References for PPIAL4C Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for PPIAL4C Gene

Domains & Families for PPIAL4C Gene

Suggested Antigen Peptide Sequences for PPIAL4C Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A0A0B4J2A2

UniProtKB/Swiss-Prot:

PAL4C_HUMAN :
  • Contains 1 PPIase cyclophilin-type domain.
  • Belongs to the cyclophilin-type PPIase family. PPIase A subfamily.
Domain:
  • Contains 1 PPIase cyclophilin-type domain.
Family:
  • Belongs to the cyclophilin-type PPIase family. PPIase A subfamily.
genes like me logo Genes that share domains with PPIAL4C: view

No data available for Gene Families for PPIAL4C Gene

Function for PPIAL4C Gene

Molecular function for PPIAL4C Gene

UniProtKB/Swiss-Prot CatalyticActivity:
Peptidylproline (omega=180) = peptidylproline (omega=0).
UniProtKB/Swiss-Prot Function:
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity).

Enzyme Numbers (IUBMB) for PPIAL4C Gene

Phenotypes for PPIAL4C Gene

genes like me logo Genes that share phenotypes with PPIAL4C: view

Animal Model Products

CRISPR Products

No data available for Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PPIAL4C Gene

Localization for PPIAL4C Gene

Subcellular locations from UniProtKB/Swiss-Prot for PPIAL4C Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PPIAL4C Gene COMPARTMENTS Subcellular localization image for PPIAL4C gene
Compartment Confidence
extracellular 5
cytosol 3
nucleus 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for PPIAL4C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with PPIAL4C: view

Pathways & Interactions for PPIAL4C Gene

SuperPathways for PPIAL4C Gene

No Data Available

Interacting Proteins for PPIAL4C Gene

Gene Ontology (GO) - Biological Process for PPIAL4C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000413 protein peptidyl-prolyl isomerization IEA --
genes like me logo Genes that share ontologies with PPIAL4C: view

No data available for Pathways by source and SIGNOR curated interactions for PPIAL4C Gene

Drugs & Compounds for PPIAL4C Gene

No Compound Related Data Available

Transcripts for PPIAL4C Gene

mRNA/cDNA for PPIAL4C Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PPIAL4C Gene

No ASD Table

Relevant External Links for PPIAL4C Gene

GeneLoc Exon Structure for
PPIAL4C
ECgene alternative splicing isoforms for
PPIAL4C

Expression for PPIAL4C Gene

mRNA expression in normal human tissues for PPIAL4C Gene

Protein differential expression in normal tissues from HIPED for PPIAL4C Gene

This gene is overexpressed in Skin (30.7), Serum (11.1), Brain (8.5), and Lung (7.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for PPIAL4C Gene



SOURCE GeneReport for Unigene cluster for PPIAL4C Gene Hs.717306

genes like me logo Genes that share expression patterns with PPIAL4C: view

Protein tissue co-expression partners for PPIAL4C Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for PPIAL4C Gene

Orthologs for PPIAL4C Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for PPIAL4C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC100612700 35
  • 98.77 (n)
  • 96.93 (a)
Species with no ortholog for PPIAL4C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for PPIAL4C Gene

ENSEMBL:
Gene Tree for PPIAL4C (if available)
TreeFam:
Gene Tree for PPIAL4C (if available)

Paralogs for PPIAL4C Gene

(20) SIMAP similar genes for PPIAL4C Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with PPIAL4C: view

Variants for PPIAL4C Gene

Sequence variations from dbSNP and Humsavar for PPIAL4C Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs2982116 -- 149,582,410(-) tggac(A/G)cctaa upstream-variant-2KB
rs4306185 -- 149,584,103(+) CACAC(A/G)CCCTA reference, missense
rs6694367 -- 149,584,434(-) CAGAA(G/T)GAATG utr-variant-3-prime
rs200241118 -- 149,583,874(-) CACAG(C/T)GATGG utr-variant-5-prime
rs377556926 -- 149,583,540(+) TTCTT(C/T)TTTTT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for PPIAL4C Gene

Variant ID Type Subtype PubMed ID
nsv428212 CNV Gain 18775914
nsv872203 CNV Gain 21882294
dgv102e1 CNV Complex 17122850
dgv103e1 CNV Complex 17122850
dgv104e1 CNV Complex 17122850
esv25174 CNV Gain 19812545
nsv872204 CNV Loss 21882294
nsv831281 CNV Gain 17160897
nsv872205 CNV Gain 21882294
esv2512286 CNV Gain 19546169
nsv7181 OTHER Inversion 18451855
dgv117e1 CNV Complex 17122850
nsv428235 CNV Gain 18775914
dgv7e55 CNV Loss 17911159
esv2750807 CNV Gain 17911159
dgv122e1 CNV Complex 17122850
esv33539 CNV Gain+Loss 17666407
dgv123e1 CNV Complex 17122850
dgv125e1 CNV Complex 17122850
dgv126e1 CNV Complex 17122850
nsv872306 CNV Gain 21882294
nsv8302 CNV Gain 18304495
nsv470736 CNV Gain 18288195
esv2750809 CNV Gain 17911159
nsv872378 CNV Gain 21882294
nsv872384 CNV Gain 21882294
dgv19n16 CNV Insertion 17901297
esv2658545 CNV Deletion 23128226
dgv20n16 CNV Deletion 17901297
dgv380n71 CNV Gain+Loss 21882294
dgv381n71 CNV Gain 21882294
nsv872398 CNV Gain 21882294
esv21909 CNV Gain 19812545
dgv383n71 CNV Loss 21882294
dgv384n71 CNV Loss 21882294
esv999046 CNV Loss 20482838
nsv872411 CNV Gain 21882294

Relevant External Links for PPIAL4C Gene

HapMap Linkage Disequilibrium report
PPIAL4C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PPIAL4C Gene

Disorders for PPIAL4C Gene

Relevant External Links for PPIAL4C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PPIAL4C

No disorders were found for PPIAL4C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PPIAL4C Gene

Publications for PPIAL4C Gene

  1. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. (PMID: 23533145) Principe S. … Drake R.R. (Proteomics 2013) 3 67
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for PPIAL4C Gene

Sources for PPIAL4C Gene

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