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Aliases for PPIAL4A Gene

Aliases for PPIAL4A Gene

  • Peptidylprolyl Isomerase A (Cyclophilin A)-Like 4A 2 3
  • COAS2 3 4 6
  • Peptidylprolyl Isomerase A (Cyclophilin A)-Like 4B 2 3
  • Cyclophilin Homolog Overexpressed In Liver Cancer 3 4
  • Chromosome 1-Amplified Sequence 2 3 4
  • EC 5.2.1.8 4 63
  • COAS-2 3 4
  • Peptidylprolyl Isomerase A (Cyclophilin A)-Like 4 2
  • Peptidyl-Prolyl Cis-Trans Isomerase A-Like 4A/B/C 3
  • Peptidylprolyl Cis-Trans Isomerase A-Like 4A 3
  • Peptidylprolyl Cis-Trans Isomerase A-Like 4B 3
  • PPIAL4A PPIAL4B PPIAL4C 4
  • Cyclophilin-LC (COAS2) 3
  • PPIase A-Like 4B 3
  • PPIase A-Like 4G 3
  • PPIase A-Like 4A 4
  • PPIAL4B 3
  • PPIAL4 3

External Ids for PPIAL4A Gene

Previous HGNC Symbols for PPIAL4A Gene

  • PPIAL4
  • PPIAL4B

Previous GeneCards Identifiers for PPIAL4A Gene

  • GC01M146419
  • GC01M147954

Summaries for PPIAL4A Gene

GeneCards Summary for PPIAL4A Gene

PPIAL4A (Peptidylprolyl Isomerase A (Cyclophilin A)-Like 4A) is a Protein Coding gene. An important paralog of this gene is PPIAL4C.

UniProtKB/Swiss-Prot for PPIAL4A Gene

  • PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PPIAL4A Gene

Genomics for PPIAL4A Gene

Regulatory Elements for PPIAL4A Gene

Genomic Location for PPIAL4A Gene

Start:
120,889,746 bp from pter
End:
120,890,530 bp from pter
Size:
785 bases
Orientation:
Plus strand

Genomic View for PPIAL4A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PPIAL4A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PPIAL4A Gene

Proteins for PPIAL4A Gene

  • Protein details for PPIAL4A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y536-PAL4A_HUMAN
    Recommended name:
    Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C
    Protein Accession:
    Q9Y536
    Secondary Accessions:

    Protein attributes for PPIAL4A Gene

    Size:
    164 amino acids
    Molecular mass:
    18182 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • It is one of seven related genes or pseudogenes found in a cluster, thought to result from gene duplication, on chromosome 1

neXtProt entry for PPIAL4A Gene

Proteomics data for PPIAL4A Gene at MOPED

Selected DME Specific Peptides for PPIAL4A Gene

Post-translational modifications for PPIAL4A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for PPIAL4A Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains for PPIAL4A Gene

Graphical View of Domain Structure for InterPro Entry

Q9Y536

UniProtKB/Swiss-Prot:

PAL4A_HUMAN :
  • Q9Y536
Domain:
  • Contains 1 PPIase cyclophilin-type domain.
Family:
  • Belongs to the cyclophilin-type PPIase family. PPIase A subfamily.
genes like me logo Genes that share domains with PPIAL4A: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for PPIAL4A Gene

Function for PPIAL4A Gene

Molecular function for PPIAL4A Gene

UniProtKB/Swiss-Prot CatalyticActivity: Peptidylproline (omega=180) = peptidylproline (omega=0)
UniProtKB/Swiss-Prot Function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity).

Enzyme Numbers (IUBMB) for PPIAL4A Gene

Gene Ontology (GO) - Molecular Function for PPIAL4A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003755 peptidyl-prolyl cis-trans isomerase activity IBA --
genes like me logo Genes that share ontologies with PPIAL4A: view

No data available for Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for PPIAL4A Gene

Localization for PPIAL4A Gene

Subcellular locations from UniProtKB/Swiss-Prot for PPIAL4A Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PPIAL4A Gene COMPARTMENTS Subcellular localization image for PPIAL4A gene
Compartment Confidence
cytosol 3
nucleus 2
extracellular 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for PPIAL4A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0070062 extracellular exosome IDA 23533145
genes like me logo Genes that share ontologies with PPIAL4A: view

Pathways for PPIAL4A Gene

SuperPathways for PPIAL4A Gene

No Data Available

Interacting Proteins for PPIAL4A Gene

Gene Ontology (GO) - Biological Process for PPIAL4A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000413 protein peptidyl-prolyl isomerization IBA --
GO:0006457 protein folding IEA --
genes like me logo Genes that share ontologies with PPIAL4A: view

No data available for Pathways by source for PPIAL4A Gene

Transcripts for PPIAL4A Gene

mRNA/cDNA for PPIAL4A Gene

(2) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PPIAL4A Gene

No ASD Table

Relevant External Links for PPIAL4A Gene

GeneLoc Exon Structure for
PPIAL4A
ECgene alternative splicing isoforms for
PPIAL4A

Expression for PPIAL4A Gene

mRNA expression in normal human tissues for PPIAL4A Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for PPIAL4A Gene

mRNA Expression by UniProt/SwissProt for PPIAL4A Gene

Q9Y536-PAL4A_HUMAN
Tissue specificity: Highly expressed in brain, ovary and mammary gland. Moderately expressed in lung, salivary gland, kidney, skin, adipose tissue, intestine and spleen. Weakly expressed in skeletal muscle, liver and stomach. Expressed in pleiomorphic and undifferentiated liposarcomas, osteosarcomas and breast carcinomas.
genes like me logo Genes that share expressions with PPIAL4A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for PPIAL4A Gene

Orthologs for PPIAL4A Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for PPIAL4A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC100612700 35
  • 97.96 (n)
  • 96.32 (a)
Species with no ortholog for PPIAL4A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for PPIAL4A Gene

ENSEMBL:
Gene Tree for PPIAL4A (if available)
TreeFam:
Gene Tree for PPIAL4A (if available)

Paralogs for PPIAL4A Gene

Paralogs for PPIAL4A Gene

Selected SIMAP similar genes for PPIAL4A Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with PPIAL4A: view

Variants for PPIAL4A Gene

Sequence variations from dbSNP and Humsavar for PPIAL4A Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs385569 -- 120,890,911(-) TGTGA(A/G)ATGAC downstream-variant-500B
rs2982116 -- 120,888,382(-) tggac(A/G)cctaa upstream-variant-2KB
rs56905076 -- 120,889,532(+) CCACA(A/G)CTTGG upstream-variant-2KB
rs57130911 -- 120,889,551(+) AAGGT(A/G)TCCTT upstream-variant-2KB
rs58377326 -- 120,889,515(+) GAAAT(A/T)AATGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for PPIAL4A Gene

Variant ID Type Subtype PubMed ID
nsv428212 CNV Gain 18775914
nsv872203 CNV Gain 21882294
dgv102e1 CNV Complex 17122850
dgv103e1 CNV Complex 17122850
dgv104e1 CNV Complex 17122850
esv25174 CNV Gain 19812545
nsv872204 CNV Loss 21882294
nsv831281 CNV Gain 17160897
nsv872205 CNV Gain 21882294
esv2512286 CNV Gain 19546169
nsv7181 OTHER Inversion 18451855
dgv116e1 CNV Complex 17122850
dgv117e1 CNV Complex 17122850
nsv510984 OTHER Inversion 20534489
esv2750803 CNV Gain 17911159
nsv428235 CNV Gain 18775914
dgv118e1 CNV Complex 17122850
dgv119e1 CNV Complex 17122850
dgv120e1 CNV Complex 17122850
dgv7e55 CNV Loss 17911159
esv2750807 CNV Gain 17911159
dgv357n71 CNV Gain 21882294
esv2717607 CNV Deletion 23290073
dgv358n71 CNV Gain 21882294
esv23584 CNV Gain 19812545
nsv8225 CNV Gain 18304495
nsv872281 CNV Gain+Loss 21882294
dgv121e1 CNV Complex 17122850
dgv359n71 CNV Loss 21882294
nsv872284 CNV Gain 21882294
dgv360n71 CNV Loss 21882294
nsv872286 CNV Loss 21882294
dgv122e1 CNV Complex 17122850
esv33539 CNV Gain+Loss 17666407
dgv123e1 CNV Complex 17122850
dgv125e1 CNV Complex 17122850
dgv126e1 CNV Complex 17122850
nsv872306 CNV Gain 21882294
nsv8302 CNV Gain 18304495
nsv470736 CNV Gain 18288195
esv2750809 CNV Gain 17911159
nsv872378 CNV Gain 21882294
nsv872384 CNV Gain 21882294
dgv19n16 CNV Insertion 17901297
esv2658545 CNV Deletion 23128226
dgv20n16 CNV Deletion 17901297
dgv380n71 CNV Gain+Loss 21882294
dgv381n71 CNV Gain 21882294
nsv872398 CNV Gain 21882294
esv21909 CNV Gain 19812545
dgv383n71 CNV Loss 21882294
dgv384n71 CNV Loss 21882294
esv999046 CNV Loss 20482838
nsv872411 CNV Gain 21882294

Relevant External Links for PPIAL4A Gene

HapMap Linkage Disequilibrium report
PPIAL4A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PPIAL4A Gene

Disorders for PPIAL4A Gene

No disorders were found for PPIAL4A Gene.

No data available for UniProtKB/Swiss-Prot for PPIAL4A Gene

Publications for PPIAL4A Gene

  1. Positional cloning identifies a novel cyclophilin as a candidate amplified oncogene in 1q21. (PMID: 11948409) Meza-Zepeda L.A. … Myklebost O. (Oncogene 2002) 2 3 4
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  3. A census of human soluble protein complexes. (PMID: 22939629) Havugimana P.C. … Emili A. (Cell 2012) 3
  4. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. (PMID: 23533145) Principe S. … Drake R.R. (Proteomics 2013) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for PPIAL4A Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate PPIAL4A
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for PPIAL4A
    • Block miRNA regulation of PPIAL4A using miScript Target Protectors

    Sources for PPIAL4A Gene

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