PPARGC1B Gene
protein-coding GIFtS: 59
GC05P149090
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peroxisome proliferator-activated receptor gamma, coactivator 1 beta (Previous names: peroxisome proliferative activated receptor, gamma, coactivator 1, beta ) Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases & Descriptions for PPARGC1B
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
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| Aliases |
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| ERRL1 2 | | PERC 1, 2, 3, 5 | | PGC-1(beta) 2 | | PGC-1-beta 3 | | PGC1 3 | | PGC1B 1, 2, 3, 5 | | PPARGC-1-beta 3 | | PPARGC1 3 |
| | | Descriptions |
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| PGC-1-related estrogen receptor alpha coactivator 2, 3 | | PPAR-gamma coactivator 1-beta 3 | peroxisome proliferative activated receptor, gamma, coactivator 1, beta 1, 2 | peroxisome proliferator-activated receptor gamma, coactivator 1 beta 2 |
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| | Search outside databases for aliases for PPARGC1B genePrevious GC identifer: GC05P149138 |
Summaries for PPARGC1B(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: PRGC2_HUMAN, Q86YN6Function: Plays a role of stimulator of transcription factors and nuclear receptors activities. Activates transcritional activity of estrogen receptor alpha, nuclear respiratory factor 1 (NRF1) and glucocorticoid receptor in the presence of glucocorticoids. May play a role in constitutive non-adrenergic-mediated mitochondrial biogenesis as suggested by increased basal oxygen consumption and mitochondrial number when overexpressed. May be involved in fat oxidation and non-oxidative glucose metabolism and in the regulation of energy expenditureGene Wiki entry for PPARGC1B |
Genomic Location for PPARGC1B
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the PPARGC1B gene 
Entrez Gene cytogenetic band: 5q33.1 Ensembl cytogenetic band: 5q33.1 HGNC cytogenetic band: 5q33.1PPARGC1B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05P149090:
(about GC identifiers)
Start:
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149,090,008 bp from pter |
End:
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149,207,474 bp from pter |
Size:
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117,467 bases |
Orientation:
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plus strand |
RefSeq DNA sequence:- NC_000005.8 NT_029289.10
| Proteins for PPARGC1B
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: PRGC2_HUMAN, Q86YN6 (See
protein sequence)Recommended Name: Peroxisome proliferator-activated receptor gamma coactivator 1-beta Size: 1023 amino acids; 113222 Da
Subunit: Interacts with hepatocyte nuclear factor 4-alpha/HNF4A, Sterol regulatory binding transcription factor 1/SREBF1, PPAR-alpha/PPARA, thyroid hormone receptor beta/THRB and host cell factor/HCFC1. Interacts with estrogen-related receptor gamma/ESRRG and alpha/ESRRA (By similarity). Interacts with estrogen receptor alpha/ESR1
Subcellular location: Nucleus
Secondary accessions: A2RUN0 Q86YN3 Q86YN4 Q86YN5 Q8N1N9 Q8TDE4 Q8TDE5Alternative splicing: 5 isoforms: Q86YN6-1 Q86YN6-2 Q86YN6-3 Q86YN6-4 Q86YN6-5 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_573570.2
ENSEMBL proteins: ENSP00000384403 ENSP00000312649 ENSP00000353638 ENSP00000377855 ENSP00000385439
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for PPARGC1B: Assays for PPARGC1B: | Protein
Domains/ Families for PPARGC1B(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q86YN6
ProtoNet protein and cluster: Q86YN6 1 Blocks protein family: IPB000504 RNA-binding region RNP-1 (RNA recognition motif)
UniProtKB/Swiss-Prot: PRGC2_HUMAN, Q86YN6Domain: Contains 2 Leu-Xaa-Xaa-Leu-Leu (LXXLL) motif, which are usually required for the association with nuclear receptors (By similarity)Similarity: Contains 1 RRM (RNA recognition motif) domain | Gene Function for PPARGC1B
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_133263
Applied Biosystems Silencer® siRNAs for PPARGC1B
Sigma-Aldrich siRNA for PPARGC1B  Sigma-Aldrich shRNA for PPARGC1B  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_133263                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_133263                                  untagged cDNA clone in CMV expression vector: NM_133263 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_133263
UniProtKB/Swiss-Prot: PRGC2_HUMAN, Q86YN6Function: Plays a role of stimulator of transcription factors and nuclear receptors activities. Activates transcritional activity of estrogen receptor alpha, nuclear respiratory factor 1 (NRF1) and glucocorticoid receptor in the presence of glucocorticoids. May play a role in constitutive non-adrenergic-mediated mitochondrial biogenesis as suggested by increased basal oxygen consumption and mitochondrial number when overexpressed. May be involved in fat oxidation and non-oxidative glucose metabolism and in the regulation of energy expenditureInduction: Repressed by saturated fatty acids such as palmitate and stearate in skeletal muscle cells. Induced by insulin and reduced by aging in skeletal muscle biopsies. Down-regulated in type 2 diabetes mellitus subjects as well as in pre-diabetics13 MGI mutant phenotypes (inferred from 6 alleles ) (MGI details for Ppargc1b):
5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
): About this table | Pathways & Interactions for PPARGC1B
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
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Gene Network CentralTM Interacting Genes and Proteins Network for PPARGC1B 
5/76 Interacting proteins for PPARGC1B (ENSP000003126493) via UniProtKB, MINT, and/or STRING (see all 76
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): About this table
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Drugs & Compounds for PPARGC1B(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
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Enzo Life Sciences drugs & compounds for PPARGC1B |
Browse Tocris compounds for PPARGC1B 2 Novoseek chemical compound relationships for PPARGC1B gene
About this table
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Transcripts for PPARGC1B(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_133263
Sigma-Aldrich siRNA for PPARGC1B  Sigma-Aldrich shRNA for PPARGC1B  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_133263 REFSEQ mRNAs for PPARGC1B gene: NM_133263.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_133263               OriGene GFP tagged cDNA clone in CMV expression vector: NM_133263                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_133263                                  untagged cDNA clone in CMV expression vector: NM_133263  Additional cDNA sequence: AF468496.1 AF468497.1 AK095391.1 AK123614.1 AK123715.1 AY188947.1 AY188948.1 AY188949.1 AY188950.1 BC026956.1 BC132971.1 BC132973.1 BC144251.1 9 DOTS entries: DT.97835483 DT.100752442 DT.100752441 DT.101963476 DT.101957170 DT.40190389 DT.95247975 DT.97770463 DT.436919 24/34 AceView cDNA sequences (see all 34
):AW811710 AY188948 AK123614 NM_133263 AY188947 AF468496 AF056986 BU955896 BM725569 BX283828 AK095391 BM725763 BM720077 AK123715 AF468497 AW236547 W70044 AY188949 BU539125 BG829583 BU739891 AY188950 CB962005 CB992747
highest scoring ESTs for PPARGC1B:AK123614 AK123715 BC026956 AF468496 AF468497 AK095391 AY188947 AY188949 AW149754 AW236547 Unigene Cluster for PPARGC1B: Peroxisome proliferator-activated receptor gamma, coactivator 1 beta Hs.591261 [show with all ESTs]Unigene Representative Sequence: AY188950
GeneLoc Exon Structure
5 Ensembl transcripts including schematic representations: ENST00000403750
ENST00000309241
ENST00000360453
ENST00000394320
ENST00000401623
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Expression for PPARGC1B
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| PPARGC1B expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for PPARGC1B
1 / 2 3 probe-sets matching PPARGC1B gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GATTTTGACA
SOURCE GeneReport for Unigene cluster: Hs.591261 UniProtKB/Swiss-Prot: PRGC2_HUMAN, Q86YN6Tissue specificity: Ubiquitous with higher expression in heart, brain and skeletal muscle |
Orthologs for PPARGC1B
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
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Orthologs for PPARGC1B gene from 5/7 species (see all 7
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About this table Species with no ortholog for PPARGC1B
ENSEMBL Gene Tree for PPARGC1B | Paralogs for PPARGC1B(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for PPARGC1B gene
- PPARGC1A2 PPRC12
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SNPs/Variants for PPARGC1B(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| UniProtKB/Swiss-Prot: PRGC2_HUMAN, Q86YN6Polymorphism: Variation of PPARGC1B may contribute to the pathogenesis of obesity, with a widespread Ala-203 allele being a risk factor for the development of this common disorders
HapMap Linkage Disequilibrium images for PPARGC1B (up to first 250kb)
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Disorders & Mutations for PPARGC1B
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
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OMIM: 608886 disorders: 601665 1 Novoseek disease relationship for PPARGC1B gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| obesity |
16.50 |
3 |
15863669 (2), 17579828 (1) |
About this table
Human Gene Mutation Database: PPARGC1B Genetic Association Database: PPARGC1B Human Genome Epidemiology Navigator: PPARGC1B (6 documents)
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Medical News for PPARGC1B(Possibly Related Articles in
Doctor's Guide)
About This Section
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Publications for PPARGC1B (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/34 PubMed articles for PPARGC1B gene (see all 34
):- The PGC-1-related protein PERC is a selective coactivator of estrogen receptor alpha. (PubMed id 11854298)1, 2, 3, 4 Kressler D....Kralli A. (2002)
- Evidence of an association between genetic variation of the coactivator PGC-1beta and obesity. (PubMed id 15863669)1, 3, 4, 6 Andersen G.... Pedersen O. (2005)
- Fatty acid-induced differential regulation of the genes encoding peroxisome proliferator-activated receptor-gamma coactivator-1alpha and -1beta in human skeletal muscle cells that have been differentiated in vitro. (PubMed id 16132959)3, 4 Staiger H....Haering H.-U. (2005)
- Multiple environmental and genetic factors influence skeletal muscle PGC-1alpha and PGC-1beta gene expression in twins. (PubMed id 15546003)3, 4 Ling C.... Vaag A. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- Coordinated reduction of genes of oxidative metabolism in humans with insulin resistance and diabetes: potential role of PGC1 and NRF1. (PubMed id 12832613)3, 4 Patti M.E....Mandarino L.J. (2003)
- Characterization of the human, mouse and rat PGC1 beta (peroxisome- proliferator-activated receptor-gamma co-activator 1 beta) gene in vitro and in vivo. (PubMed id 12678921)3, 4 Meirhaeghe A.... Vidal-Puig A.J. (2003)
- Mutation analysis of peroxisome proliferator-activated receptor-gamma coactivator-1 (PGC-1) and relationships of identified amino acid polymorphisms to Type II diabetes mellitus. (PubMed id 11793024)2, 3 Ek J....Pedersen O. (2001)
- Impact of the peroxisome proliferator activated receptor-gamma coactivator-1beta (PGC-1beta) Ala203Pro polymorphism on in vivo metabolism, PGC-1beta expression and fibre type composition in human skeletal muscle. (PubMed id 17579828)1, 3 Ling C....Poulsen P. (2007)
- Peroxisome proliferator-activated receptor gamma coactivator 1beta (PGC-1beta ), a novel PGC-1-related transcription coactivator associated with host cell factor. (PubMed id 11733490)1, 3 Lin J....Spiegelman B.M. (2002)
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Search for PPARGC1B
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
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Genome Databases showing PPARGC1B
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
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| Other Databases showing PPARGC1B
(According to HUGE)
About This Section
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Specialized Databases showing PPARGC1B(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
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| Services for PPARGC1B(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
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 Products for PPARGC1B:

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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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