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PPARG Gene

protein-coding   GIFtS: 73

GC03P012305
peroxisome proliferator-activated receptor gamma
(Previous names: peroxisome proliferative activated receptor, gamma )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
"" "" "" "" "" "" "" "" "" "" "" "" "" "" "" ""Services    
"" "" "" "" "" "" "" "" "" "" "" "" ""
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases & Descriptions
peroxisome proliferator-activated receptor gamma1 2     GLM12 5
NR1C31 2 3     CIMT12 5
PPARG21 2 5     peroxisome proliferative activated receptor, gamma1
PPARG11 2 5     PPAR gamma2
PPARgamma1 2     peroxisome proliferative activated receptor gamma2
Nuclear receptor subfamily 1 group C member 32 3     peroxisome proliferator-activated receptor gamma 12
PPAR-gamma2 3     

External Ids:    HGNC: 92361   Entrez Gene: 54682   Ensembl: ENSG000001321707   UniProtKB: P372313   

Search outside databases for aliases for PPARG gene

Previous GC identifers: GC03P012258 GC03P012304

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for PPARG:
This gene encodes a member of the peroxisome proliferator-activated receptor (PPAR) subfamily of nuclear receptors.
PPARs form heterodimers with retinoid X receptors (RXRs) and these heterodimers regulate transcription of various
genes. Three subtypes of PPARs are known: PPAR-alpha, PPAR-delta, and PPAR-gamma. The protein encoded by this gene is
PPAR-gamma and is a regulator of adipocyte differentiation. Additionally, PPAR-gamma has been implicated in the
pathology of numerous diseases including obesity, diabetes, atherosclerosis and cancer. Alternatively spliced
transcript variants that encode different isoforms have been described. (provided by RefSeq)

UniProtKB/Swiss-Prot: PPARG_HUMAN, P37231
Function: Receptor that binds peroxisome proliferators such as hypolipidemic drugs and fatty acids. Once activated by a
ligand, the receptor binds to a promoter element in the gene for acyl-CoA oxidase and activates its transcription. It
therefore controls the peroxisomal beta-oxidation pathway of fatty acids. Key regulator of adipocyte differentiation
and glucose homeostasis

"" summary for PPARG:
Peroxisome proliferator-activated receptor gamma (PPARgamma) is a member of the nuclear receptor family of
ligand-activated transcription factors that heterodimerize with the retinoic X receptor (RXR) to regulate
gene expression. PPARgamma is located primarily in the adipose tissue, lymphoid tissue, colon, liver and
heart and is thought to regulate adipocyte differentiation and glucose homeostasis. PPARgamma has been
implicated in the pathology of numerous diseases including obesity, diabetes, atherosclerosis and cancer.
The human gene encoding PPARgamma has been localized to chromosome 3 (3p25).

Gene Wiki entry for PPARG (Peroxisome proliferator-activated receptor gamma)
(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC and Ensembl (release 56), Regulatory elements and Epigenetics data according to SABiosciences)
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Regulatory elements:
"" SABiosciences Regulatory transcription factor binding sites in the PPARG gene upstream (promoter) region "":
deltaCREB   CREB   Egr-1   C/EBPalpha   FOXO1a   Oct-B1   POU2F2C   POU2F2   POU2F1   oct-B3   

Epigenetics:
"" Search SABiosciences Methyl-Profiler DNA Methylation qPCR Primer Assays for PPARG ""

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3p25   Ensembl cytogenetic band:  3p25.2   HGNC cytogenetic band: 3p25

PPARG Gene in genomic location: bands according to Ensembl, locations according to "" (and/or Entrez Gene and/or Ensembl if different)
""

GeneLoc gene densities for chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P012305:  view genomic region     (about GC identifiers)

Start:
12,328,867 bp from pter
End:
12,475,855 bp from pter
Size:
146,989 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000003.11  NT_022517.18  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene, Novus Biologicals, and/or Sino Biological,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 May 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abnova, OriGene, Novus Biologicals, and/or Epitomics)
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UniProtKB/Swiss-Prot: PPARG_HUMAN, P37231 (See protein sequence)
Recommended Name: Peroxisome proliferator-activated receptor gamma  
Size: 505 amino acids; 57620 Da
Subunit: Forms a heterodimer with the retinoic acid receptor RXRA called adipocyte-specific transcription factor ARF6.
Interacts with NCOA6 coactivator, leading to a strong increase in transcription of target genes. Interacts with
coactivator PPARBP, leading to a mild increase in transcription of target genes. Interacts with FAM120B. Interacts
with PRDM16 (By similarity). Interacts with NOCA7 in a ligand-inducible manner. Interacts with NCOA1 LXXLL motifs.
Interacts with TGFB1I1. Interacts with DNTTIP2
Subcellular location: Nucleus
Sequence caution: Sequence=AAN38992.2; Type=Erroneous initiation; Sequence=BAA23354.1; Type=Erroneous gene model
prediction; Sequence=BAF83270.1; Type=Erroneous initiation; Sequence=CAA62153.1; Type=Erroneous initiation;
PDB structures from "" and Proteopedia "" :
1FM6 (3D) ""    1FM9 (3D) ""    1I7I (3D) ""    1K74 (3D) ""    1KNU (3D) ""    1NYX (3D) ""    1PRG (3D) ""    1RDT (3D) ""    
1WM0 (3D) ""    1ZEO (3D) ""    1ZGY (3D) ""    2ATH (3D) ""    2F4B (3D) ""    2FVJ (3D) ""    2G0G (3D) ""    2G0H (3D) ""    
2GTK (3D) ""    2HFP (3D) ""    2HWQ (3D) ""    2HWR (3D) ""    2I4J (3D) ""    2I4P (3D) ""    2I4Z (3D) ""    2OM9 (3D) ""    
2P4Y (3D) ""    2POB (3D) ""    2PRG (3D) ""    2Q59 (3D) ""    2Q5P (3D) ""    2Q5S (3D) ""    2Q61 (3D) ""    2Q6R (3D) ""    
2Q6S (3D) ""    2Q8S (3D) ""    2QMV (3D) ""    2VSR (3D) ""    2VST (3D) ""    2VV0 (3D) ""    2VV1 (3D) ""    2VV2 (3D) ""    
2VV3 (3D) ""    2VV4 (3D) ""    2ZK0 (3D) ""    2ZK1 (3D) ""    2ZK2 (3D) ""    2ZK3 (3D) ""    2ZK4 (3D) ""    2ZK5 (3D) ""    
2ZK6 (3D) ""    2ZNO (3D) ""    2ZVT (3D) ""    3B3K (3D) ""    3BC5 (3D) ""    3CDP (3D) ""    3CDS (3D) ""    3CS8 (3D) ""    
3CWD (3D) ""    3D6D (3D) ""    3DZU (3D) ""    3DZY (3D) ""    3E00 (3D) ""    3ET0 (3D) ""    3ET3 (3D) ""    3FEJ (3D) ""    
3FUR (3D) ""    3G9E (3D) ""    3GBK (3D) ""    3H0A (3D) ""    3HO0 (3D) ""    3HOD (3D) ""    3IA6 (3D) ""    3K8S (3D) ""    
3KMG (3D) ""    3PRG (3D) ""    4PRG (3D) ""    
Secondary accessions: A8K3G6 B5BUA1 O00684 O00710 O14515 Q15178 Q15179 Q15180 Q15832 Q86U60 Q96J12
Alternative splicing: 2 isoforms:  P37231-1   P37231-2   (Additional isoforms seem to exist)

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (4 alternative transcripts): 
    NP_005028.4  NP_056953.2  NP_619725.2  NP_619726.2  


    ENSEMBL proteins: 
    ENSP00000380194 ENSP00000400017 ENSP00000380224 ENSP00000392285 ENSP00000380195 ENSP00000380210 
    ENSP00000380198 ENSP00000380218 ENSP00000380196 ENSP00000312472 ENSP00000380201 ENSP00000380221 
    ENSP00000380205 ENSP00000380207 ENSP00000287820 ENSP00000411931 


    Human Recombinant Proteins 
    ""Browse Purified and Recombinant Proteins at Millipore
    ""Browse Human Recombinant Proteins at Sigma-Aldrich
    "" Browse R&D Systems for human recombinant proteins
    ""Browse recombinant and purified proteins available from Enzo Life Sciences
    ""HuPro® and/or Recombinant Proteins from Abnova for PPARG ""
    "" Origene Purified Recombinant Human Proteins (see all 3): PPARG
    ""Novus Biologicals Proteins for PPARG  ""
    Novus Biologicals Lysates for PPARG
    ""Browse Sino Biological Recombinant Proteins  ""

    2 Gene Ontology (GO) cellular component terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634 nucleus IDA9568716
    GO:0005829 cytosol ISS--
    About this table

    "" PPARG for ontologies           About GeneDecksing



    Antibodies for PPARG: 
    ""Millipore Mono- and Polyclonal Antibodies for the study of PPARG
    ""Sigma-Aldrich Antibodies for PPARG
    ""R&D Systems Antibodies for PPARG (PPAR gamma/NR1C3)
    ""Cell Signaling Technology (CST) Antibodies for PPARG  (PPARgamma)
    ""Monoclonal and Polyclonal Antibodies from Abnova (PPARG)
    ""Browse Origene Antibodies ""
    ""Novus Biologicals Antibodies for PPARG
    ""Browse antibodies at Epitomics

    Assays for PPARG: 
    ""Millipore Kits and Assays for the Analysis of PPARG
    ""Browse ELISAs at Sigma-Aldrich
    "" Browse R&D Systems for biochemical assays
    ""Browse Enzo Life Sciences for kits & assays

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

      User Feedback

    "" PPARG for domains           About GeneDecksing

    5/7 InterPro domains/families (see all 7 ):
     IPR008946 Nucl_hormone_rcpt_ligand-bd
     IPR003077 1Cnucl_rcpt_G
     IPR001723 Str_hrmn_rcpt
     IPR003074 1Cnucl_rcpt
     IPR013088 Znf_NHR/GATA

    Graphical View of Domain Structure for InterPro Entry P37231

    ProtoNet protein and cluster: P37231

    3 Blocks protein families:
    IPB001723 Steroid hormone receptor signature
    IPB003074 Peroxisome proliferator-activated receptor (1C nuclear receptor) signature
    IPB003077 Peroxisome proliferator-activated receptor gamma signature


    UniProtKB/Swiss-Prot: PPARG_HUMAN, P37231
    Similarity: Belongs to the nuclear hormone receptor family. NR1 subfamily
    Similarity: Contains 1 nuclear receptor DNA-binding domain

    (According to MGI May 08 2010, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, Abnova, siRNAs from Applied Biosystems, Sigma-Aldrich, Clones from Millipore, Sigma-Aldrich, OriGene, Sino Biological, Ontologies according to Gene Ontology Consortium 01 May 2010 via Entrez Gene.)
    About This Section

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    Inhib.
    RNA:
    ""Millipore RNAi Products for the Analysis of PPARG Gene knock-down
    ""Abnova Chimera RNAi Products for Gene knock-down (PPARG)
    "" Origene 29mer shRNA kits in GFP-retroviral vector (see all 4): PPARG
    Origene shRNA RFP (see all 4): PPARG
    Origene basic RS shRNA (see all 4): PPARG

    ""Applied Biosystems Silencer® siRNAs for PPARG
    ""Sigma-Aldrich siRNA Panels and siRNA for PPARG
    Sigma-Aldrich shRNA Panels and shRNA for PPARG
    Explore Sigma-Aldrich super-pooled esiRNAs
    Clones:""Browse Clones for the Expression of Recombinant Proteins Available from Millipore
    ""Browse iPSC Reprogramming Factors at Sigma-Aldrich
    "" Origene GFP tagged cDNA clones in CMV expression vector (see all 4): PPARG
    Origene Myc/DDK tagged cDNA clones in CMV expression vector (see all 4): PPARG
    Origene untagged cDNA clones in CMV expression vector (see all 8): PPARG
    ""Browse Sino Biological Human cDNA Clones  ""

    UniProtKB/Swiss-Prot: PPARG_HUMAN, P37231
    Function: Receptor that binds peroxisome proliferators such as hypolipidemic drugs and fatty acids. Once activated by a
    ligand, the receptor binds to a promoter element in the gene for acyl-CoA oxidase and activates its transcription. It
    therefore controls the peroxisomal beta-oxidation pathway of fatty acids. Key regulator of adipocyte differentiation
    and glucose homeostasis

    Genatlas biochemistry entry for PPARG:
    peroxisome proliferator-activated receptor,steroid/thyroid hormone coactivator receptor superfamily,heterodimerizing
    with RXR*,coactivated by SRCO1,expressed (isoform 1) in the diploid trophoblast lineages and required for placental
    development,expressed at low levels in preadipocytes,induced by CEBPB and CEBPD,coexpressed with and coregulated by
    PPARG,jointly required for full adipocyte differentiation and fat deposition with variability influencing plasma
    leptin levels in obese humans,modulator of insulin sensitivity and control of glucose homostasis and blood pressure
    and activation of antidiabetic effect of thiazolidinediones,negative regulator of macrophage activation,inhibiting
    production of monocyte inflammatory cytokines,increasing PAI1 expression in endothelial cells.

    5/19 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 19 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677 DNA binding ISS--
    GO:0003682 chromatin binding ----
    GO:0003700 transcription factor activity ISS--
    GO:0003707 steroid hormone receptor activity IEA--
    GO:0004879 ligand-dependent nuclear receptor activity IDA10622252
    About this table

    "" PPARG for ontologies           About GeneDecksing

    Animal Models: 15/26 MGI mutant phenotypes (inferred from 28 alleles""(MGI details for Pparg) (see all 26 ):

    adipose tissuebehavior/neurologicalcardiovascular systemcellulardigestive/alimentary
    embryogenesisendocrine/exocrine glandgrowth/sizehearing/vestibular/earhematopoietic system
    homeostasis/metabolismimmune systemlethality-postnatallethality-prenatal/perinatallife span-post-weaning/aging

    "" PPARG for phenotypes           About GeneDecksing

    (Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, Applied Biosystems GeneAssist, KEGG and/or UniProtKB, (map by GeneGo),
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 May 2010 via Entrez Gene).
    About This Section

      User Feedback

    "" PPARG for pathways           About GeneDecksing

    3 "" Millipore Pathways for PPARG
      ""  Transcription PPAR Pathway
    Development Beta-adrenergic receptors signaling via cAMP
    Immune response Oncostatin M signaling via MAPK in human cells

    5/7 "" Sigma-Aldrich "Your Favorite Gene" Pathways for  PPARG  (Your Favorite Gene powered by Ingenuity) (see all 7 )
      ""  ERK/MAPK Signaling
    Type II Diabetes Mellitus Signaling
    PPAR Signaling
    FXR/RXR Activation
    Thyroid Cancer Signaling

    2 "" GeneAssist Pathways for PPARG
      ""  PPAR Pathway
    Polyamine Regulation in Colon Cancer

    2 "" Cell Signaling Technology (CST) Pathways for PPARG: 
      ""  NF-kB Signaling
    MAPK/Erk in Growth and Differentiation

    4 "" Kegg Pathways  (Kegg details for PPARG):
      ""  hsa03320 PPAR signaling pathway
    hsa05016 Huntington's disease
    hsa05200 Pathways in cancer
    hsa05216 Thyroid cancer

    "" SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for PPARG

    5/34 Interacting proteins for PPARG (P372311, 2 ENSP000002878203) via UniProtKB, MINT, and/or STRING (see all 34 ""
    InteractantInteraction Details
    GeneCardExternal ID(s)
    PPARGC1AQ9UBK22, ENSP000002648673MINT-7229698 MINT-7229685 STRING: ENSP00000264867
    EP300Q094721, ENSP000002632533EBI-781384,EBI-447295 STRING: ENSP00000263253
    MED1Q156481, ENSP000003006513EBI-781384,EBI-394459 STRING: ENSP00000300651
    EDF1O608691EBI-781384,EBI-781301
    SMARCA4P515321EBI-781384,EBI-302489
    About this table

    5/50 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 50 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000122 negative regulation of transcription from RNA polymerase II promoter ISS--
    GO:0001818 negative regulation of cytokine production IEA--
    GO:0001890 placenta development ISS--
    GO:0002674 negative regulation of acute inflammatory response IEA--
    GO:0006355 regulation of transcription, DNA-dependent ----
    About this table

    "" PPARG for ontologies           About GeneDecksing


    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

      User Feedback

    "" PPARG for compounds           About GeneDecksing

    "" Enzo Life Sciences drugs & compounds for PPARG
    ""Sigma-Aldrich Small Molecules for PPARG:
    Small Molecule - Antagonist Small Molecule - Agonist Small Molecule - Mixed Agonist/Antagonist Small Molecule - Activator

    "" Compounds for PPARG available from Tocris Bioscience
    CompoundAction CAS number
    TroglitazoneSelective PPARgamma agonist; antidiabetic agent[97322-87-7]
    BADGEPPARgamma antagonist[1675-54-3]
    GW 1929 hydrochlorideSelective PPARgamma agonist. Orally active[196808-24-9]
    nTZDpaPotent, selective PPARgamma partial agonist[118414-59-8]
    T 0070907Highly potent and selective PPARgamma antagonist[313516-66-4]
    About this table


    10/899 ""Novoseek chemical compound relationships for PPARG gene (see all 899 )
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    gw9662 100.00 397 16696951 (6), 12022867 (6), 18566752 (3), 18203887 (3) (see all 100)
    ciglitazone 100.00 414 19288012 (5), 18780770 (5), 17494862 (5), 12697971 (5) (see all 100)
    pioglitazone 100.00 675 19281808 (6), 17643887 (5), 19737384 (4), 19506796 (4) (see all 100)
    15-deoxy-delta-12,14-prostaglandin j2 100.00 843 15254749 (8), 17643887 (6), 16198309 (6), 12970094 (6) (see all 100)
    thiazolidinedione 100.00 369 12694805 (12), 10075686 (6), 9832442 (5), 17390024 (4) (see all 100)
    troglitazone 100.00 853 10871190 (8), 9709955 (7), 16303758 (7), 12475986 (6) (see all 100)
    telmisartan 100.00 216 19822796 (8), 18250362 (6), 19635982 (5), 19590508 (5) (see all 100)
    rosiglitazone 100.00 1382 17622750 (7), 18630997 (6), 18261208 (6), 12970094 (6) (see all 100)
    bisphenol a diglycidyl ether 76.71 53 11991651 (5), 11879183 (4), 11030710 (3), 15992368 (2) (see all 41)
    gw1929 70.32 33 19420904 (2), 18097603 (2), 16484545 (2), 15677767 (2) (see all 29)
    About this table

    3 PharmGKB drug compound relationships for PPARG gene
    Drug compound PharmGKB Relations PubMed IDs for articles supporting these relationships
    glitazonesPD  GN  11966407
    insulinPD  9806549
    rosiglitazonePD  15181049
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 223 Homo sapiens; Apr 2 2010) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Millipore and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene, microRNA from SABiosciences,
    Tagged/untagged cDNA clones from OriGene, Primers from OriGene and/or SABiosciences,
    Expression Assays from Applied Biosystems)
    About This Section

      User Feedback
    Inhib.
    RNA:
    ""Millipore RNAi Products for the Analysis of PPARG Gene knock-down
    ""Abnova Chimera RNAi Products for Gene knock-down (PPARG)
    ""Applied Biosystems Silencer® siRNAs:  NM_005037  NM_015869  NM_138711  NM_138712  
    "" Origene 29mer shRNA kits in GFP-retroviral vector (see all 4): PPARG
    Origene shRNA RFP (see all 4): PPARG
    Origene basic RS shRNA (see all 4): PPARG

    ""Sigma-Aldrich siRNA Panels and siRNA for PPARG
    Sigma-Aldrich shRNA Panels and shRNA for PPARG
    Explore Sigma-Aldrich super-pooled esiRNAs

    microRNA:""8 SABiosciences microRNAs that regulate PPARG""
    hsa-miR-128b hsa-miR-454 hsa-miR-27a hsa-miR-128 hsa-miR-130a hsa-miR-301a hsa-miR-27b hsa-miR-130b
    Assays:  ""Applied Biosystems TaqMan® Gene Expression Assays:  
    NM_005037  NM_015869  NM_138711  NM_138712  


    Clones:"" Origene GFP tagged cDNA clones in CMV expression vector (see all 4): PPARG
    Origene Myc/DDK tagged cDNA clones in CMV expression vector (see all 4): PPARG
    Origene untagged cDNA clones in CMV expression vector (see all 8): PPARG
    Primers:"" Origene genome-wide validated SYBR primer pairs: PPARG
    ""SABiosciences RT2 qPCR Primer Assay for PPARG: PPH02291A ""

    REFSEQ mRNAs for PPARG gene (4 alternative transcripts): 

    NM_005037.5  NM_015869.4  NM_138711.3  NM_138712.3  

    Additional cDNA sequence: 

    AB097931.1 AB107271.1 AB307692.1 AB451337.1 AB451486.1 AB472042.1 AJ563369.1 AJ563370.1 
    AJ698135.1 AK223528.1 AK290581.1 BC006811.1 BT007281.1 CR599329.1 CR605352.1 CR609113.1 
    CR609454.1 CR622226.1 D83233.1 DQ356894.1 U63415.1 U79012.1 X90563.1 

    11 DOTS entries:

    DT.112942  DT.100791623  DT.100791622  DT.100791631  DT.75152583  DT.120867762  DT.97811244  DT.100791626 
    DT.100791629  DT.120867823  DT.95371767 

    24/116 AceView cDNA sequences (see all 116 ):

    BQ722874 BM995901 CD101663 BQ021210 BQ012686 NM_005037 AB107271 BI761688 
    AI200451 CR599329 BG742110 BU526666 AL549037 U63415 AL543579 BU626490 
    BM790089 BU618129 AW628342 BF514811 CB133173 NM_138711 BQ012901 AI355115 

    "" highest scoring ESTs for PPARG:

    AA053166 AA088420 AA558472 AA625223 AI123591 AI280895 AI280973 AI339791 AI355115 AI749134 

    Unigene Cluster for PPARG:

    Peroxisome proliferator-activated receptor gamma
    Hs.162646  [show with all ESTs]
    Unigene Representative Sequence: AB472042


    GeneLoc Exon Structure

    5/9 Alternative Splicing Database (ASD) splice patterns (SP) for PPARG (see all 9 )

    ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b · 9c ^ 10a · 10b ^ 11 ^ 12 ^ 13a · 13b · 13c
    SP1:                                -     -                 -                                                                                 
    SP2:                    -     -     -     -     -     -     -                                                                                 
    SP3:                                                                                                                                          
    SP4:                                                        -                                                           -                     
    SP5:                    -     -     -     -                 -                                                                                 

    About this scheme

    ECgene alternative splicing isoforms for PPARG

    18 Ensembl transcripts including schematic representations:
    ENST00000396998  ENST00000429166  ENST00000397029  ENST00000438682  ENST00000396999  ENST00000397015  
    ENST00000477039  ENST00000397003  ENST00000397023  ENST00000397000  ENST00000497594  ENST00000309576  
    ENST00000397006  ENST00000397026  ENST00000397010  ENST00000397012  ENST00000287820  ENST00000455517  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 223 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems, Primers from OriGene and/or SABiosciences )
    About This Section

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    PPARG expression in normal and diseased human tissues

    "" Applied Biosystems TaqMan ® Gene Expression Assays for PPARG

    1""  / 2""  / 3""

    3 probe-sets matching PPARG gene

    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    37104_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 L40904 0.80 1.00 0.91 1
    208510_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_015869 0.60 1.00 0.82 1
    208510_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table

    "" PPARG for expression           About GeneDecksing

    Data from Genenote  (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: AGTCTTCACC

    SOURCE GeneReport for Unigene cluster: Hs.162646

    UniProtKB/Swiss-Prot: PPARG_HUMAN, P37231
    Tissue specificity: Highest expression in adipose tissue. Lower in skeletal muscle, spleen, heart and liver. Also
    detectable in placenta, lung and ovary

    Primers:"" Origene genome-wide validated SYBR primer pairs: PPARG ""
    ""SABiosciences RT2 qPCR Primer Assay for PPARG: PPH02291A ""
    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI May 08 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section

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    Orthologs for PPARG gene from 5/12 species (see all 12 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    PPARG1   -- peroxisome proliferator-activated receptor gamma 92.34(n)
    98.22(a)
    403606  NM_001024632.1  NP_001019803.1 
    chimpanzee
    (Pan troglodytes)
    PPARG1   -- peroxisome proliferator-activated receptor gamma 99.54(n)
    99.8(a)
    460178  XM_001153669.1  XP_001153669.1 
    cow
    (Bos taurus)
    PPARG1   -- peroxisome proliferator-activated receptor gamma 91.02(n)
    95.84(a)
    281993  NM_181024.2  NP_851367.1 
    rat
    (Rattus norvegicus)
    Pparg1   -- peroxisome proliferator-activated receptor gamma 89.83(n)
    95.84(a)
    25664  NM_013124.1  NP_037256.1 
    mouse
    (Mus musculus)
    Pparg1, 5 6 (52.70 cM)5
    peroxisome proliferator activated receptor gamma1, 5 90.03(n)1
    96.04(a)1
    190161  NM_011146.21  NP_035276.11 
     AB2565295  AB2565305  (see all 32)
    About this table        Species with no ortholog for PPARG

    ENSEMBL Gene Tree for PPARG
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
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    Paralogs for PPARG gene
    VDR2  PPARD2  NR1I22  RARG2  PPARA2  THRB2  RARA2  NR1H42  
    RARB2  NR1D22  RORA2  RORB2  RORC2  NR1D12  NR1I32  NR1H22  
    THRA2  NR1H32  

    "" PPARG for paralogs           About GeneDecksing


    (SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Genotyping Reagents from Applied Biosystems)
    About This Section

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    UniProtKB/Swiss-Prot: PPARG_HUMAN, P37231
    Polymorphism: Genetic variation in PPARG may influence body mass index (BMI) [MIM:606641]. BMI reflects the amount of
    fat, lean mass, and body build


    10/720 NCBI SNPs in PPARG are shown (see all 720 )
    (Click "" for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 341)
    ABGenomic DataTranscription Related DataAllele Frequencies
    SNP IDValidChr 3 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    ""
    rs21974231,2
    C,F,A,H12324939(-) AGACAC/TGATGG 4 -- int1 ng51""8Minor allele frequency- T:0.09NS EA NA 486""
    ""
    rs124861701,2
    C,F,A,H12325652(+) GTTCAA/GACATC 4 -- int1 ng51""3Minor allele frequency- G:0.26NA WA 124""
    ""
    rs68028981,2
    C,F,A,H12324563(+) GTTTTC/TGCTTT 4 -- int1 ng51""11Minor allele frequency- T:0.28NS EA NA WA 688""
    ""
    rs76474811,2
    C,F,A,H12325169(+) ATTCCG/ATGATG 4 -- int1 ng51""9Minor allele frequency- A:0.07NS EA NA WA 548""
    --
    rs41353641,2
    C,F,H12409241(+) TCTCCC/TCTCCC 4 -- ng31""11Minor allele frequency- T:0.01NS MN NA 732""
    ""
    rs76499701,2
    C,F12325628(+) CTTATC/TGTTTA 4 -- int1 ng51""6Minor allele frequency- T:0.09NS EA NA WA 532""
    --
    rs130769331,2
    C,F12261094(+) tgaacT/Ggtaca 2 -- ng51""6Minor allele frequency- G:0.12NS NA EA 230""
    ""
    rs170361601,2
    C,F12263457(+) GGGGTC/TTTGGG 3 -- int1 ng51""5Minor allele frequency- T:0.07NS NA 168""
    --
    rs41353001,2
    C,F12409308(+) TTTTTC/TTTTTC 4 -- ng31""14Minor allele frequency- T:0.07NS MN NA EA 1834""
    --
    rs170290021,2
    C,F12262595(+) AGGGAC/TCCGAA 3 -- ng51""3Minor allele frequency- T:0.02NS NA 134""
    About this table

    HapMap Linkage Disequilibrium images for PPARG (up to first 250kb)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)  ""
    Database of Genomic Variants (DGV): 3 variations for PPARG
         2 Indels: 42164 62033
         1 Inversion: 37239

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

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    "" PPARG for disorders           About GeneDecksing

    OMIM: 601487

    UniProtKB/Swiss-Prot: PPARG_HUMAN, P37231

  • Defects in PPARG can lead to type 2 insulin-resistant diabetes and hyptertension
  • Defects in PPARG may be associated with susceptibility to obesity [MIM:601665]
  • Defects in PPARG may be associated with colon cancer
  • Defects in PPARG are the cause of familial partial lipodystrophy type 3 (FPLD3) [MIM:604367]. Familial partial
  • lipodystrophies (FPLD) are a heterogeneous group of genetic disorders characterized by marked loss of subcutaneous
    (sc) fat from the extremities. Affected individuals show an increased preponderance of insulin resistance, diabetes
    mellitus and dyslipidemia
  • Variation in PPARG is associated with carotid intimal medial thickness 1 (CIMT1) [MIM:609338]. CIMT is a
  • measure of atherosclerosis that is independently associated with traditional atherosclerotic cardiovascular disease
    risk factors and coronary atherosclerotic burden. 35 to 45% of the variability in multivariable-adjusted CIMT is
    explained by genetic factors

    10/765 ""Novoseek disease relationships for PPARG gene (see all 765 )

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    diabetes; type 2 100.00 543 15782399 (5), 15558556 (5), 14514601 (5), 14501167 (5) (see all 100)
    insulin resistance 100.00 448 16305809 (5), 11872365 (5), 11533050 (5), 19966034 (4) (see all 100)
    insulin sensitivity 100.00 353 20182551 (4), 14536066 (4), 19390629 (3), 17618105 (3) (see all 100)
    colon cancer 39.47 213 14521714 (6), 9734398 (4), 9472692 (4), 19458067 (4) (see all 100)
    follicular carcinoma 26.04 51 15362967 (6), 12651598 (5), 12170088 (4), 12161538 (4) (see all 26)
    familial partial lipodystrophies 25.86 21 17766367 (3), 17312272 (2), 17299075 (2), 16241930 (2) (see all 14)
    partial lipodystrophy 23.99 24 18076675 (5), 17356052 (4), 15711581 (3), 19749155 (2) (see all 13)
    fpld3 23.32 11 15711581 (3), 17299075 (2), 16412238 (2), 19748282 (1) (see all 7)
    fluid retention 22.83 33 19752200 (2), 19595686 (2), 16822823 (2), 15956187 (2) (see all 28)
    inflammatory response 18.87 142 16386242 (3), 16127449 (3), 15470065 (3), 12456800 (3) (see all 100)
    About this table

    3 PharmGKB disease relationships for PPARG gene
    Disease PharmGKB Relations PubMed IDs for articles supporting these relationships
    Diabetes Mellitus, Non-Insulin-DependentPD  15181049
    Endometrial NeoplasmsCO  GN  15608564
    ObesityPD  9806549
    About this table

    Genatlas disease: PPARG
    marked obesity with a high body-mass index and a defect in the regulation of adipocyte differentiation associated with
    type 2 diabetes

    Human Gene Mutation Database: PPARG
    Genetic Association Database: PPARG
    Human Genome Epidemiology Navigator: PPARG (504 documents)

    (Possibly Related Articles in Doctor's Guide)
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    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

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    100/3743 PubMed articles for PPARG gene (see all 3743 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

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     ANDOR
    Aliases
    Disorders
    Search String
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 5468 HGNC: 9236 AceView: PPARG Ensembl:ENSG00000132170 euGenes: HUgn5468
    ECgene: PPARG Kegg: 5468 H-InvDB: PPARG
    (According to HUGE)
    About This Section

      User Feedback
      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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    NameDescription
    ATLAS Chromosomes in Cancer entry for PPARG Genetics and Cytogenetics in Oncology and Haematology
    Wikipedia http://en.wikipedia.org/wiki/Peroxisome_proliferator-activated_receptor
    GeneReviewshttp://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/PPARG
    SeattleSNPshttp://pga.gs.washington.edu/data/pparg/
    SHMPDhttp://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=PPARG
    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from XenneX, Inc.)
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    Patent Information for PPARG gene: ""
    Search GeneIP for patents involving PPARG

    Licensable Technologies for PPARG gene:
     ""Salk Institute: Use of RAR Antagonists as Modulators of Hormone Mediated Processes    (see all 4)
    GeneCards and IP: ""
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search


    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Novus Biologicals,
    Epitomics, Sigma-Aldrich, R&D Systems, SABiosciences, Millipore, Abnova,
    Clones available from OriGene, Sigma-Aldrich, Sino Biological, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience)
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    ""
    ""
    Products for PPARG:
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    "" Antibodies  "" Primer Pairs  
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    """"""""
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