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Aliases for POU5F1P4 Gene

Aliases for POU5F1P4 Gene

  • POU Class 5 Homeobox 1 Pseudogene 4 2 3 5
  • POU Domain Class 5, Transcription Factor 1 Pseudogene 4 2 3
  • POU Domain Transcription Factor OCT4-Pg4 3
  • Oct4-Pg4 3
  • POU5FLC1 3

External Ids for POU5F1P4 Gene

Previous GeneCards Identifiers for POU5F1P4 Gene

  • GC00U922238
  • GC01P153670
  • GC01P155403
  • GC01P126764
  • GC01P155436
  • GC01P155437
  • GC01P155438
  • GC01P155439
  • GC01P155441

Summaries for POU5F1P4 Gene

GeneCards Summary for POU5F1P4 Gene

POU5F1P4 (POU Class 5 Homeobox 1 Pseudogene 4) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for POU5F1P4 Gene

Genomics for POU5F1P4 Gene

Regulatory Elements for POU5F1P4 Gene

Enhancers for POU5F1P4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G155132 1.4 ENCODE dbSUPER 5.8 -297.7 -297687 5.3 CREB3L1 MLX AGO1 DMAP1 YY1 ZNF143 SP3 SSRP1 GLIS1 NBN GBAP1 SYT11 ENSG00000231064 DCST1-AS1 ADAM15 POU5F1P4 SLC50A1 DPM3
GH01G155123 1.7 FANTOM5 ENCODE dbSUPER 4.4 -305.2 -305156 8.7 MLX CREB3L1 AGO1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 SP3 LOC101928120 MSTO2P PYGO2 KIAA0907 ASH1L GBAP1 EFNA1 DPM3 ASH1L-AS1 THBS3
GH01G155069 1.5 Ensembl ENCODE dbSUPER 4.6 -362.4 -362353 2.8 HDGF PKNOX1 FOXA2 AGO1 ARID4B DMAP1 YY1 ZNF766 ZNF143 SP3 ADAM15 GBAP1 THBS3 POU5F1P4 DCST1-AS1 EFNA3
GH01G155172 1.6 Ensembl ENCODE dbSUPER 4.3 -257.4 -257429 7.3 HDGF FOXA2 MLX CREB3L1 ARNT ARID4B SIN3A DMAP1 FEZF1 ZNF2 GBAP1 ASH1L PYGO2 MSTO2P LOC101928120 ADAM15 MUC1 POU5F1P4 TRIM46 ENSG00000273088
GH01G155206 1.4 ENCODE dbSUPER 4.3 -224.5 -224492 4.5 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 SIN3A ARID4B DMAP1 ZNF2 THBS3 FAM189B SCAMP3 TRIM46 KRTCAP2 POU5F1P4 MTX1 LOC105371450
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around POU5F1P4 on UCSC Golden Path with GeneCards custom track

Genomic Location for POU5F1P4 Gene

Chromosome:
1
Start:
155,433,178 bp from pter
End:
155,434,262 bp from pter
Size:
1,085 bases
Orientation:
Plus strand

Genomic View for POU5F1P4 Gene

Genes around POU5F1P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
POU5F1P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for POU5F1P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for POU5F1P4 Gene

Proteins for POU5F1P4 Gene

  • Protein details for POU5F1P4 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    D5K9S3
    Recommended name:
    POU domain protein
    Protein Accession:
    D5K9S3

    Protein attributes for POU5F1P4 Gene

    Size:
    286 amino acids
    Molecular mass:
    31173 Da
    Quaternary structure:
    No Data Available

neXtProt entry for POU5F1P4 Gene

Post-translational modifications for POU5F1P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for POU5F1P4 Gene

Domains & Families for POU5F1P4 Gene

Gene Families for POU5F1P4 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with POU5F1P4: view

No data available for UniProtKB/Swiss-Prot for POU5F1P4 Gene

Function for POU5F1P4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for POU5F1P4 Gene

Localization for POU5F1P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for POU5F1P4 Gene

Pathways & Interactions for POU5F1P4 Gene

SuperPathways for POU5F1P4 Gene

No Data Available

Interacting Proteins for POU5F1P4 Gene

Gene Ontology (GO) - Biological Process for POU5F1P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for POU5F1P4 Gene

Transcripts for POU5F1P4 Gene

mRNA/cDNA for POU5F1P4 Gene

(16) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for POU5F1P4 Gene

POU class 5 homeobox 1 pseudogene 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for POU5F1P4 Gene

No ASD Table

Relevant External Links for POU5F1P4 Gene

GeneLoc Exon Structure for
POU5F1P4
ECgene alternative splicing isoforms for
POU5F1P4

Expression for POU5F1P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for POU5F1P4 Gene

mRNA differential expression in normal tissues according to GTEx for POU5F1P4 Gene

This gene is overexpressed in Kidney - Cortex (x6.4).

NURSA nuclear receptor signaling pathways regulating expression of POU5F1P4 Gene:

POU5F1P4

SOURCE GeneReport for Unigene cluster for POU5F1P4 Gene:

Hs.632482
genes like me logo Genes that share expression patterns with POU5F1P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for POU5F1P4 Gene

Orthologs for POU5F1P4 Gene

Evolution for POU5F1P4 Gene

ENSEMBL:
Gene Tree for POU5F1P4 (if available)
TreeFam:
Gene Tree for POU5F1P4 (if available)

No data available for Orthologs for POU5F1P4 Gene

Paralogs for POU5F1P4 Gene

No data available for Paralogs for POU5F1P4 Gene

Variants for POU5F1P4 Gene

Sequence variations from dbSNP and Humsavar for POU5F1P4 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1001850260 -- 155,434,075(+) ATTTT(C/G)AGGCT intron-variant, nc-transcript-variant
rs1002574752 -- 155,432,517(+) TACTA(C/G)TGTAA intron-variant, upstream-variant-2KB
rs1002852248 -- 155,433,029(+) AACTA(C/T)AGTAA intron-variant, upstream-variant-2KB
rs1002929451 -- 155,432,232(+) TATGC(C/T)CTCTC intron-variant, upstream-variant-2KB
rs1003070978 -- 155,432,791(+) AGTGC(A/G)GTGGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for POU5F1P4 Gene

Variant ID Type Subtype PubMed ID
esv33869 CNV loss 17666407
nsv831636 CNV loss 17160897
nsv946415 CNV duplication 23825009

Relevant External Links for POU5F1P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
POU5F1P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for POU5F1P4 Gene

Disorders for POU5F1P4 Gene

Relevant External Links for POU5F1P4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
POU5F1P4

No disorders were found for POU5F1P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for POU5F1P4 Gene

Publications for POU5F1P4 Gene

  1. Expression and differentiation between OCT4A and its Pseudogenes in human ESCs and differentiated adult somatic cells. (PMID: 24586860) Jez M. … Dominko T. (PLoS ONE 2014) 3 64
  2. Pseudogene OCT4-pg4 functions as a natural micro RNA sponge to regulate OCT4 expression by competing for miR-145 in hepatocellular carcinoma. (PMID: 23615404) Wang L. … Yang A.G. (Carcinogenesis 2013) 3 64
  3. Differential expression of Oct4 variants and pseudogenes in normal urothelium and urothelial cancer. (PMID: 23933063) Wezel F. … Southgate J. (Am. J. Pathol. 2013) 3 64
  4. Transcriptional regulation of Oct4 by a long non-coding RNA antisense to Oct4-pseudogene 5. (PMID: 21151833) Hawkins P.G. … Morris K.V. (Transcription 2010) 3 64
  5. Oct4 and its pseudogenes confuse stem cell research. (PMID: 18371374) Liedtke S. … KAPgler G. (Cell Stem Cell 2007) 3 64

Products for POU5F1P4 Gene

Sources for POU5F1P4 Gene

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