Free for academic non-profit institutions. Other users need a Commercial license

Aliases for POU5F1P3 Gene

Aliases for POU5F1P3 Gene

  • POU Class 5 Homeobox 1 Pseudogene 3 2 3 5
  • POU Domain Class 5, Transcription Factor 1 Pseudogene 3 2 3
  • POU Domain, Class 5, Transcription Factor 1-Like 2
  • POU Domain Transcription Factor OCT4-Pg3 3
  • POU5FLC12 3
  • OCT4-Pg3 3
  • POU5F1L 3
  • OTF3L 3

External Ids for POU5F1P3 Gene

Previous HGNC Symbols for POU5F1P3 Gene

  • OTF3L
  • POU5F1L

Previous GeneCards Identifiers for POU5F1P3 Gene

  • GC12U900755
  • GC12M008179
  • GC12M008286

Summaries for POU5F1P3 Gene

GeneCards Summary for POU5F1P3 Gene

POU5F1P3 (POU Class 5 Homeobox 1 Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for POU5F1P3 Gene

Genomics for POU5F1P3 Gene

Regulatory Elements for POU5F1P3 Gene

Enhancers for POU5F1P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F008079 1.1 ENCODE 11.3 +53.2 53220 3.7 HDGF PKNOX1 WRNIP1 ARID4B SIN3A YBX1 FEZF1 DMAP1 ZNF2 YY1 FOXJ2 POU5F1P3 HADHAP2 M6PR ENSG00000256967 NECAP1 ENSG00000279865 C3AR1
GH12F008031 0.6 ENCODE 11.2 +100.8 100813 4.6 WRNIP1 ARID4B SIN3A ZNF48 ZNF121 GLIS2 GATA2 ZNF263 SP3 GTF2B C3AR1 POU5F1P3 M6PR ENSG00000256967 NECAP1 FOXJ2
GH12F008025 1.1 Ensembl ENCODE 11.2 +108.1 108057 2.9 HDGF PKNOX1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 POU5F1P3 M6PR ENSG00000256967 HSPD1P12 GC12M007989 FOXJ2
GH12F007933 0.5 ENCODE 11.1 +199.7 199747 4.8 PKNOX1 ATF1 WRNIP1 ARID4B ZNF2 YY1 ZNF121 ZNF143 DEK PAF1 SLC2A14 ENSG00000256967 FOXJ2 PHB2 POU5F1P3 C1RL-AS1 SCARNA12 GDF3 GC12M007881 SLC2A3
GH12F007988 0.8 Ensembl ENCODE 4.3 +144.5 144516 3.5 HDGF TBP HDAC1 GATA2 ELK4 MEF2D KLF16 SMARCA4 IKZF1 HMBOX1 FOXJ2 HSPD1P12 POU5F1P3 RPS20P28 ENSG00000206636
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around POU5F1P3 on UCSC Golden Path with GeneCards custom track

Genomic Location for POU5F1P3 Gene

Chromosome:
12
Start:
8,133,769 bp from pter
End:
8,134,852 bp from pter
Size:
1,084 bases
Orientation:
Minus strand

Genomic View for POU5F1P3 Gene

Genes around POU5F1P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
POU5F1P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for POU5F1P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for POU5F1P3 Gene

Proteins for POU5F1P3 Gene

  • Protein details for POU5F1P3 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    D5K9S6
    Recommended name:
    POU domain transcription factor OCT4-pg3
    Protein Accession:
    D5K9S6

    Protein attributes for POU5F1P3 Gene

    Size:
    186 amino acids
    Molecular mass:
    19192 Da
    Quaternary structure:
    No Data Available

neXtProt entry for POU5F1P3 Gene

Post-translational modifications for POU5F1P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for POU5F1P3 Gene

Domains & Families for POU5F1P3 Gene

Gene Families for POU5F1P3 Gene

Protein Domains for POU5F1P3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with POU5F1P3: view

No data available for UniProtKB/Swiss-Prot for POU5F1P3 Gene

Function for POU5F1P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for POU5F1P3 Gene

Localization for POU5F1P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for POU5F1P3 Gene

Pathways & Interactions for POU5F1P3 Gene

SuperPathways for POU5F1P3 Gene

No Data Available

Interacting Proteins for POU5F1P3 Gene

Gene Ontology (GO) - Biological Process for POU5F1P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for POU5F1P3 Gene

Transcripts for POU5F1P3 Gene

mRNA/cDNA for POU5F1P3 Gene

(22) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for POU5F1P3 Gene

POU class 5 homeobox 1 pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for POU5F1P3 Gene

No ASD Table

Relevant External Links for POU5F1P3 Gene

GeneLoc Exon Structure for
POU5F1P3
ECgene alternative splicing isoforms for
POU5F1P3

Expression for POU5F1P3 Gene

mRNA expression in normal human tissues for POU5F1P3 Gene

mRNA differential expression in normal tissues according to GTEx for POU5F1P3 Gene

This gene is overexpressed in Whole Blood (x6.9).

NURSA nuclear receptor signaling pathways regulating expression of POU5F1P3 Gene:

POU5F1P3

SOURCE GeneReport for Unigene cluster for POU5F1P3 Gene:

Hs.646545
genes like me logo Genes that share expression patterns with POU5F1P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for POU5F1P3 Gene

Orthologs for POU5F1P3 Gene

Evolution for POU5F1P3 Gene

ENSEMBL:
Gene Tree for POU5F1P3 (if available)
TreeFam:
Gene Tree for POU5F1P3 (if available)

No data available for Orthologs for POU5F1P3 Gene

Paralogs for POU5F1P3 Gene

genes like me logo Genes that share paralogs with POU5F1P3: view

No data available for Paralogs for POU5F1P3 Gene

Variants for POU5F1P3 Gene

Sequence variations from dbSNP and Humsavar for POU5F1P3 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10770233 -- 8,135,928(+) TCCCC(A/G)GAAGA intron-variant, upstream-variant-2KB
rs10840744 -- 8,135,365(+) CAGAT(A/G)GCACT intron-variant, upstream-variant-2KB
rs10840746 -- 8,135,502(+) CTCTC(C/T)CTTGG intron-variant, upstream-variant-2KB
rs11043498 -- 8,134,452(+) CTCCT(C/T)CGGGT intron-variant, nc-transcript-variant
rs11043505 -- 8,135,254(+) TACTG(C/G)TTCTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for POU5F1P3 Gene

Variant ID Type Subtype PubMed ID
esv2759877 CNV gain+loss 17122850
nsv428270 CNV gain 18775914
nsv976563 CNV duplication 23825009

Relevant External Links for POU5F1P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
POU5F1P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for POU5F1P3 Gene

Disorders for POU5F1P3 Gene

Relevant External Links for POU5F1P3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
POU5F1P3

No disorders were found for POU5F1P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for POU5F1P3 Gene

Publications for POU5F1P3 Gene

  1. In situ hybridization localizes the human OTF3 to chromosome 6p21.3-->p22 and OTF3L to 12p13. (PMID: 8500351) Guillaudeux T. … Pontarotti P. (Cytogenet. Cell Genet. 1993) 2 3 64
  2. Expression and differentiation between OCT4A and its Pseudogenes in human ESCs and differentiated adult somatic cells. (PMID: 24586860) Jez M. … Dominko T. (PLoS ONE 2014) 3 64
  3. Differential expression of Oct4 variants and pseudogenes in normal urothelium and urothelial cancer. (PMID: 23933063) Wezel F. … Southgate J. (Am. J. Pathol. 2013) 3 64
  4. Oct-3/4: not just a gatekeeper of pluripotency for embryonic stem cell, a cell fate instructor through a gene dosage effect. (PMID: 17245123) Stefanovic S. … PucAcat M. (Cell Cycle 2007) 3 64
  5. Oct4 and its pseudogenes confuse stem cell research. (PMID: 18371374) Liedtke S. … KAPgler G. (Cell Stem Cell 2007) 3 64

Products for POU5F1P3 Gene

Sources for POU5F1P3 Gene

Content
Loading form....