Aliases for POU3F2 Gene
Aliases for POU3F2 Gene
External Ids for POU3F2 Gene
- HGNC: 9215
- Entrez Gene: 5454
- Ensembl: ENSG00000184486
- OMIM: 600494
- UniProtKB: P20265
Previous HGNC Symbols for POU3F2 Gene
- OTF7
Previous GeneCards Identifiers for POU3F2 Gene
- GC06P099150
- GC06P099299
- GC06P099328
- GC06P099295
- GC06P099389
- GC06P096721
Summaries for POU3F2 Gene
-
This gene encodes a member of the POU-III class of neural transcription factors. The encoded protein is involved in neuronal differentiation and enhances the activation of corticotropin-releasing hormone regulated genes. Overexpression of this protein is associated with an increase in the proliferation of melanoma cells. [provided by RefSeq, Mar 2012]
GeneCards Summary for POU3F2 Gene
POU3F2 (POU Class 3 Homeobox 2) is a Protein Coding gene. Diseases associated with POU3F2 include Melanoma and Microphthalmia. Among its related pathways are Sudden Infant Death Syndrome (SIDS) Susceptibility Pathways and MECP2 and Associated Rett Syndrome. Gene Ontology (GO) annotations related to this gene include DNA binding transcription factor activity and identical protein binding. An important paralog of this gene is POU3F3.
UniProtKB/Swiss-Prot for POU3F2 Gene
-
Transcription factor that plays a key role in neuronal differentiation (By similarity). Binds preferentially to the recognition sequence which consists of two distinct half-sites, (GCAT) and (TAAT), separated by a non-conserved spacer region of 0, 2, or 3 nucleotides (By similarity). The combination of three transcription factors, ASCL1, POU3F2/BRN2 and MYT1L, is sufficient to reprogram fibroblasts and other somatic cells into induced neuronal (iN) cells in vitro. Acts downstream of ASCL1, accessing chromatin that has been opened by ASCL1, and promotes transcription of neuronal genes (By similarity).
Additional gene information for POU3F2 Gene
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for POU3F2 Gene
Genomics for POU3F2 Gene
GeneHancer (GH) Regulatory Elements for POU3F2 Gene
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH06I098833 | Promoter/Enhancer | 2.2 | EPDnew Ensembl ENCODE dbSUPER | 550.8 | 0.0 | -29 | 1.3 | PKNOX1 FEZF1 ZNF2 ZNF213 KLF13 ZNF263 SP3 NFYC REST ZNF610 | POU3F2 FBXL4 ENSG00000283010 | |
GH06I098832 | Enhancer | 1 | FANTOM5 dbSUPER | 573 | -1.9 | -1872 | 0.6 | ZNF202 MAZ SUZ12 ZNF223 ZEB2 ZNF335 ZFHX2 GLIS1 SCRT2 PRDM10 | POU3F2 ENSG00000283010 PNISR LOC101927365 FBXL4 | |
GH06I098834 | Enhancer | 0.9 | ENCODE dbSUPER | 550.8 | -0.8 | -772 | 0.2 | SMARCE1 ZNF282 MXI1 AFF1 ZBTB6 NCOA1 ZNF2 ZNF335 ZBTB48 ZNF341 | ENSG00000283010 POU3F2 FBXL4 | |
GH06I098831 | Enhancer | 0.7 | FANTOM5 dbSUPER | 20.4 | -2.8 | -2791 | 0.2 | ZNF202 CTBP2 EZH2 | ENSG00000283010 POU3F2 PNISR LOC101927365 ENSG00000187472 | |
GH06I098845 | Enhancer | 1.3 | FANTOM5 ENCODE dbSUPER | 9.7 | +11.2 | 11218 | 0.3 | ZNF2 GLIS2 ZNF213 ARID2 ZNF143 DEK SP3 NCOA1 REST ZNF518A | PNISR USP45 POU3F2 GC06M098840 FBXL4 |
Regulatory Element Products
Genomic Locations for POU3F2 Gene
- chr6:98,834,592-98,839,470
- (GRCh38/hg38)
- Size:
- 4,879 bases
- Orientation:
- Plus strand
- chr6:99,282,580-99,286,666
- (GRCh37/hg19)
Genomic View for POU3F2 Gene
- Cytogenetic band:
-
- 6q16.1 by Ensembl
- 6q16.1 by Entrez Gene
- 6q16.1 by HGNC


RefSeq DNA sequence for POU3F2 Gene
Proteins for POU3F2 Gene
-
Protein details for POU3F2 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P20265-PO3F2_HUMAN
- Recommended name:
- POU domain, class 3, transcription factor 2
- Protein Accession:
- P20265
- Q14960
- Q86V54
- Q9UJL0
Protein attributes for POU3F2 Gene
- Size:
- 443 amino acids
- Molecular mass:
- 46893 Da
- Quaternary structure:
-
- Interacts with PQBP1 (PubMed:10332029). Interaction with ISL1 (By similarity).
Protein Expression for POU3F2 Gene
Post-translational modifications for POU3F2 Gene
Other Protein References for POU3F2 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
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No data available for DME Specific Peptides for POU3F2 Gene
Domains & Families for POU3F2 Gene
Gene Families for POU3F2 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
- Transcription factors
Protein Domains for POU3F2 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for POU3F2 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
P20265UniProtKB/Swiss-Prot:
PO3F2_HUMAN :- Belongs to the POU transcription factor family. Class-3 subfamily.
- Family:
-
- Belongs to the POU transcription factor family. Class-3 subfamily.
Function for POU3F2 Gene
Molecular function for POU3F2 Gene
- GENATLAS Biochemistry:
- POU domain,class 3,transcription factor 2,murine brain-2 (Brn-2) homolog
- UniProtKB/Swiss-Prot Function:
- Transcription factor that plays a key role in neuronal differentiation (By similarity). Binds preferentially to the recognition sequence which consists of two distinct half-sites, (GCAT) and (TAAT), separated by a non-conserved spacer region of 0, 2, or 3 nucleotides (By similarity). The combination of three transcription factors, ASCL1, POU3F2/BRN2 and MYT1L, is sufficient to reprogram fibroblasts and other somatic cells into induced neuronal (iN) cells in vitro. Acts downstream of ASCL1, accessing chromatin that has been opened by ASCL1, and promotes transcription of neuronal genes (By similarity).
Phenotypes From GWAS Catalog for POU3F2 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0000978 | RNA polymerase II proximal promoter sequence-specific DNA binding | IEA | -- |
GO:0001077 | transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding | IEA | -- |
GO:0001105 | RNA polymerase II transcription coactivator activity | IEA | -- |
GO:0003677 | DNA binding | IEA | -- |
GO:0003700 | DNA binding transcription factor activity | ISS,TAS | -- |
Phenotypes for POU3F2 Gene
- MGI mutant phenotypes for POU3F2:
- inferred from 3 alleles
- GenomeRNAi human phenotypes for POU3F2:
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miRNA for POU3F2 Gene
- miRTarBase miRNAs that target POU3F2
-
- hsa-mir-211-5p (MIRT006355)
- hsa-mir-221-3p (MIRT024206)
- hsa-let-7a-5p (MIRT052422)
- hsa-mir-6781-5p (MIRT442057)
- hsa-mir-6739-5p (MIRT442058)
- hsa-mir-6733-5p (MIRT442059)
- hsa-mir-3153 (MIRT442060)
- hsa-mir-6895-5p (MIRT442061)
- hsa-mir-5681a (MIRT442062)
- hsa-mir-6816-3p (MIRT442063)
- hsa-mir-335-3p (MIRT638411)
- hsa-mir-5096 (MIRT638412)
- hsa-mir-3152-5p (MIRT638413)
- hsa-mir-4774-3p (MIRT638414)
- hsa-mir-1256 (MIRT638415)
- hsa-mir-5581-5p (MIRT638416)
- hsa-mir-4297 (MIRT638417)
- hsa-mir-153-5p (MIRT638418)
- hsa-mir-5197-5p (MIRT638419)
Transcription Factor Targets for POU3F2 Gene
Targeted motifs for POU3F2 Gene
- Consensus sequence: ATGAATATTC Submotif: canonical Cell Type: NPC GEO ID: GSE35496
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No data available for Enzyme Numbers (IUBMB) and Human Phenotype Ontology for POU3F2 Gene
Localization for POU3F2 Gene
Subcellular locations from UniProtKB/Swiss-Prot for POU3F2 Gene
- Nucleus.
- Nucleus (3)
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005634 | nucleus | IDA | -- |
GO:0005667 | transcription factor complex | IEA | -- |
Pathways & Interactions for POU3F2 Gene
Pathways by source for POU3F2 Gene
1 Cell Signaling Technology pathway for POU3F2 Gene
2 BioSystems pathways for POU3F2 Gene
Interacting Proteins for POU3F2 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0006351 | transcription, DNA-templated | IEA | -- |
GO:0006355 | regulation of transcription, DNA-templated | IEA | -- |
GO:0006357 | regulation of transcription by RNA polymerase II | ISS | -- |
GO:0006366 | transcription by RNA polymerase II | IEA | -- |
GO:0007399 | nervous system development | ISS | -- |
No data available for SIGNOR curated interactions for POU3F2 Gene
Transcripts for POU3F2 Gene
mRNA/cDNA for POU3F2 Gene
- (1) REFSEQ mRNAs :
- (3) Additional mRNA sequences :
- (24) Selected AceView cDNA sequences:
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for POU3F2 Gene
CRISPR Products
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-
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- Mammalian expression: PiggyBac
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- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
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- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
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Expression for POU3F2 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- NULL (Uncategorized)
- Brain (Nervous System)
-
Peripheral Nervous System (Nervous System)
- Pro-myelinating Schwann Cells Peripheral Nerve Domain
- Immature Schwann Cells Peripheral Nerve Domain
- Neural Tube (Nervous System)
- Spinal Cord (Nervous System)
- Neural Ectoderm (Nervous System)
- Oligodendrocytes (Nervous System)
- Glial Cells (Uncategorized)
mRNA differential expression in normal tissues according to GTEx for POU3F2 Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for POU3F2 Gene
NURSA nuclear receptor signaling pathways regulating expression of POU3F2 Gene:
POU3F2SOURCE GeneReport for Unigene cluster for POU3F2 Gene:
Hs.182505mRNA Expression by UniProt/SwissProt for POU3F2 Gene:
P20265-PO3F2_HUMANEvidence on tissue expression from TISSUES for POU3F2 Gene
- Nervous system(4.6)
- Liver(4)
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No data available for Protein differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for POU3F2 Gene
Orthologs for POU3F2 Gene
This gene was present in the common ancestor of animals.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
dog (Canis familiaris) |
Mammalia | POU3F2 34 |
|
OneToOne | |
LOC481931 33 |
|
||||
chimpanzee (Pan troglodytes) |
Mammalia | POU3F2 33 34 |
|
||
oppossum (Monodelphis domestica) |
Mammalia | POU3F2 34 |
|
OneToOne | |
cow (Bos Taurus) |
Mammalia | POU3F2 33 34 |
|
||
mouse (Mus musculus) |
Mammalia | Pou3f2 33 16 34 |
|
||
rat (Rattus norvegicus) |
Mammalia | Pou3f2 33 |
|
||
platypus (Ornithorhynchus anatinus) |
Mammalia | -- 34 |
|
OneToMany | |
lizard (Anolis carolinensis) |
Reptilia | POU3F2 34 |
|
OneToOne | |
tropical clawed frog (Silurana tropicalis) |
Amphibia | LOC100486226 33 |
|
||
Str.12364 33 |
|
||||
African clawed frog (Xenopus laevis) |
Amphibia | pou3f2-A 33 |
|
||
zebrafish (Danio rerio) |
Actinopterygii | pou3f2b 33 34 |
|
||
pou3f2a 34 |
|
OneToMany | |||
pou47 33 |
|
||||
fruit fly (Drosophila melanogaster) |
Insecta | vvl 35 34 |
|
||
nub 35 |
|
|
|||
pdm2 35 |
|
|
|||
worm (Caenorhabditis elegans) |
Secernentea | ceh-6 35 |
|
|
- Species where no ortholog for POU3F2 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for POU3F2 Gene
Paralogs for POU3F2 Gene
(13) SIMAP similar genes for POU3F2 Gene using alignment to 1 proteins:
Variants for POU3F2 Gene
SNP ID | Clin | Chr 06 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs1000206538 | -- | 98,834,546(+) | T/A/G | upstream_transcript_variant | |
rs1000217603 | -- | 98,834,762(+) | G/A | 5_prime_UTR_variant | |
rs1000481538 | -- | 98,835,671(+) | C/T | coding_sequence_variant, synonymous_variant | |
rs1000551991 | -- | 98,833,909(+) | A/G | upstream_transcript_variant | |
rs1000813348 | -- | 98,834,114(+) | C/A/G | upstream_transcript_variant |
Additional Variant Information for POU3F2 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for POU3F2 Gene
Disorders for POU3F2 Gene
Disorder | Aliases | PubMed IDs |
---|---|---|
melanoma |
|
|
microphthalmia |
|
Additional Disease Information for POU3F2
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for UniProtKB/Swiss-Prot and Genatlas for POU3F2 Gene
Publications for POU3F2 Gene
- Exclusion of mutations in the PRNP, JPH3, TBP, ATN1, CREBBP, POU3F2 and FTL genes as a cause of disease in Portuguese patients with a Huntington-like phenotype. (PMID: 16858508) Costa Mdo C … Maciel P (Journal of human genetics 2006) 3 22 44 58
- PQBP-1, a novel polyglutamine tract-binding protein, inhibits transcription activation by Brn-2 and affects cell survival. (PMID: 10332029) Waragai M … Okazawa H (Human molecular genetics 1999) 3 4 22 58
- The brn-2 gene regulates the melanocytic phenotype and tumorigenic potential of human melanoma cells. (PMID: 7651733) Thomson JA … Thomson F (Oncogene 1995) 3 4 22 58
- cDNA cloning of human N-Oct3, a nervous-system specific POU domain transcription factor binding to the octamer DNA motif. (PMID: 8441633) Schreiber E … Fontana A (Nucleic acids research 1993) 2 3 4 58
- Genome-wide analysis of POU3F2/BRN2 promoter occupancy in human melanoma cells reveals Kitl as a novel regulated target gene. (PMID: 20337985) Kobi D … Davidson I (Pigment cell & melanoma research 2010) 3 22 58
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- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
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- antibodies-online: Search results for 98 available POU3F2 Antibodies ranked by validation data
- Compare Top POU3F2 Antibodies
- antibodies-online: Search results for 3 available POU3F2 Elisa Kits ranked by validation data
- Compare Top POU3F2 Elisa Kits
- Quality Products:
- antibodies-online: Search results for 8 available POU3F2 Proteins ranked by validation data
- Compare Top POU3F2 Proteins
- Quality Products:
- GeneTex POU3F2 antibody for POU3F2
- Search GeneTex for Proteins for POU3F2
- ViGene Biosciences adenoviral particle packaged cDNA for POU3F2 gene
- ViGene Biosciences lentiviral particle packaged cDNA for POU3F2 gene
- ViGene Biosciences ready-to-package AAV shRNAs for POU3F2 gene
- Search ViGene Biosciences for POU3F2
- Santa Cruz Biotechnology (SCBT) Antibodies for POU3F2
- Search Santa Cruz Biotechnology (SCBT) for POU3F2 siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for POU3F2
- Custom Antibody ServicesProSci Antibodies for POU3F2
- Search for POU3F2 Proteins at ProSci
- Horizon Cell Lines for POU3F2
- genomics-online: cdna clones - Search results for 90 available POU3F2 gene related products
- Overview of 90 available POU3F2 gene related products
- orf clones - Search results for 90 available POU3F2 gene related products
- Overview of 90 available POU3F2 gene related products
- genomics-online: gRNA clones - Search results for 90 available POU3F2 gene related products
- Overview of 90 available POU3F2 gene related products
- genomics-online: primer clones - Search results for 90 available POU3F2 gene related products
- Overview of 90 available POU3F2 gene related products
- genomics-online: shRNA clones - Search results for 90 available POU3F2 gene related products
- Overview of 90 available POU3F2 gene related products
Sources for POU3F2 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew