Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

POU3F1 Gene

protein-coding   GIFtS: 52
GCID: GC01M038509

POU class 3 homeobox 1

(Previous names: POU domain class 3, transcription factor 1 )
(Previous symbol: OTF6)
 Explore 10 diseases affiliated with
POU3F1 via our new
 Human Malady Compendium 
Biological research products
for POU3F1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
POU Class 3 Homeobox 11 2     OTF-62 3
OCT61 2 3     POU Domain Transcription Factor SCIP2 3
OTF61 2 3     POU Domain Class 3, Transcription Factor 11
SCIP1 2     POU Domain, Class 3, Transcription Factor 12
Octamer-Binding Protein 62 3     Oct-63
Octamer-Binding Transcription Factor 62 3     

External Ids:    HGNC: 92141   Entrez Gene: 54532   Ensembl: ENSG000001856687   OMIM: 6024795   UniProtKB: Q030523   
ORGUL members:         
NONCODE:n337877    

Export aliases for POU3F1 gene to outside databases

Previous GC identifers: GC01M038434 GC01M037517 GC01M037973 GC01M037923 GC01M038179 GC01M038282 GC01M036628


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: PO3F1_HUMAN, Q03052
Function: Transcription factor that binds to the octamer motif (5'-ATTTGCAT-3'). Thought to be involved in early
embryogenesis and neurogenesis

Gene Wiki entry for POU3F1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.1  NT_032977.9  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the POU3F1 gene promoter:
         NF-1/L   NF-1   GATA-3   SREBP-1c   SREBP-1b   GATA-1   Egr-4   SREBP-1a   HFH-1   Ik-1   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for POU3F1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat POU3F1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p34.1   Ensembl cytogenetic band:  1p34.3   HGNC cytogenetic band: 1p34.3

POU3F1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
POU3F1 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M038509:  view genomic region     (about GC identifiers)

Start:
38,509,523 bp from pter      End:
38,512,450 bp from pter
Size:
2,928 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: PO3F1_HUMAN, Q03052 (See protein sequence)
Recommended Name: POU domain, class 3, transcription factor 1  
Size: 451 amino acids; 45496 Da
Subcellular location: Nucleus
Secondary accessions: Q5TAG2

Explore the universe of human proteins at neXtProt for POU3F1: NX_Q03052

POU3F1 Protein expression data from MOPED and PaxDb:    About this image 
POU3F1 Protein Expression

REFSEQ proteins: NP_002690.3  
ENSEMBL proteins: 
 ENSP00000362103  

Human Recombinant Protein Products for POU3F1: 
Browse Purified and Recombinant Proteins at EMD Millipore
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
OriGene Protein Over-expression Lysate: POU3F1
OriGene Custom Protein Services for POU3F1 
GenScript Custom Purified and Recombinant Proteins Services for POU3F1
Novus Biologicals POU3F1 Lysate
Browse Sino Biological Recombinant Proteins
Browse ProSpec Recombinant Proteins
Browse Proteins at Uscn

Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus ISS--
GO:0005667transcription factor complex IEA--

POU3F1 for ontologies           About GeneDecksing



POU3F1 Antibody Products: 
Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Browse R&D Systems for Antibodies
OriGene Antibodies (see all 2): POU3F1
OriGene Custom Antibody Services for POU3F1 
GenScript Custom Superior Antibodies Services for POU3F1
Novus Biologicals POU3F1 Antibody
Abcam antibodies for POU3F1 
Browse Antibodies at Uscn
Search ThermoFisher Antibodies for POU3F1

Assay Products for POU3F1: 
Browse Kits and Assays available from EMD Millipore
OriGene Custom Immunoassay Development
Browse OriGene Fluorogenic Cell Assay Kits
Browse R&D Systems for biochemical assays
GenScript Custom Assay Services for POU3F1
Browse Enzo Life Sciences for kits & assays
Browse ELISAs and CLIAs at Uscn


(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

POU3F1 for domains           About GeneDecksing

5/7 InterPro domains/families (see all 7):
 IPR010982 Lambda_DNA-bd_dom
 IPR016362 Transcription_factor_POU
 IPR013847 POU
 IPR000327 POU_specific
 IPR017970 Homeobox_CS

Graphical View of Domain Structure for InterPro Entry Q03052

ProtoNet protein and cluster: Q03052

2 Blocks protein families:
IPB000327 POU domain
IPB013847 POU


UniProtKB/Swiss-Prot: PO3F1_HUMAN, Q03052
Similarity: Belongs to the POU transcription factor family. Class-3 subfamily
Similarity: Contains 1 homeobox DNA-binding domain
Similarity: Contains 1 POU-specific domain


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Molecular Function:

     UniProtKB/Swiss-Prot Summary: PO3F1_HUMAN, Q03052
Function: Transcription factor that binds to the octamer motif (5'-ATTTGCAT-3'). Thought to be involved in early
embryogenesis and neurogenesis

     Genatlas biochemistry entry for POU3F1:
POU domain,class 3,transcription factor 1

     Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0001105RNA polymerase II transcription coactivator activity IEA--
GO:0003677DNA binding ----
GO:0003700sequence-specific DNA binding transcription factor activity IEA--
GO:0043565sequence-specific DNA binding IDA9242494
     
POU3F1 for ontologies           About GeneDecksing


Phenotypes:
     9 MGI mutant phenotypes (inferred from 5 alleles(MGI details for Pou3f1):
 behavior/neurological  growth/size  homeostasis/metabolism  integument  mortality/aging 
 nervous system  no phenotypic analysis  normal  respiratory system 

POU3F1 for phenotypes           About GeneDecksing

Animal Models:
     Mouse knock-outs for POU3F1: Pou3f1tm2.1Mejr Pou3f1tm2Mejr
   inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for POU3F1 

10/342 SABiosciences Target genes for POU3F1 (see all 342):
ACTR3 AGBL2 ALOX15B ANAPC4 ANKS1A AOX2P AP1M1 AP3S2 ARGFX ARID1B

miRNA
Products:
    
OriGene 3'-UTR Clone: POU3F1
Browse MicroRNA Expression Plasmids
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat POU3F1
8/64 QIAGEN miScript miRNA Assays for microRNAs that regulate POU3F1 (see all 64):
hsa-miR-323-3p hsa-miR-1224-3p hsa-miR-218-1* hsa-miR-1260b hsa-miR-138-2* hsa-miR-342-3p hsa-miR-502-3p hsa-miR-629*
SwitchGear 3'UTR luciferase reporter plasmidPOU3F1 3' UTR sequence
Inhib. RNA
Products:
    
Browse for Gene Knock-down Tools from EMD Millipore
OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for POU3F1 (see all 7)
OriGene shRNA RFP: POU3F1
OriGene siRNA: POU3F1
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat POU3F1
Sirion Biotech Custom design and validation of potent shRNA sequences against POU3F1 

Gene Editing
Products:
DNA2.0 Custom Protein Engineering Service for POU3F1
Sirion Biotech Customized adenovirus for overexpression of POU3F1 
Sirion Biotech Customized adenovirus for potent knockdown of POU3F1

Clone
Products:
     
Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for POU3F1 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for POU3F1
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
GenScript: all cDNA clones in your preferred vector: POU3F1 (NM_002699)
Browse Sino Biological Human cDNA Clones
DNA2.0 Custom Codon Optimized Gene Synthesis Service for POU3F1
Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat POU3F1 

Cell Line
Products:
     
GenScript Custom overexpressing Cell Line Services for POU3F1
Search LifeMap BioReagents cell lines for POU3F1
Sirion Biotech Customized stable knockdown cell line services for POU3F1 
Sirion Biotech Customized inducible knockdown cell line services for POU3F1
Sirion Biotech Customized stable overexpressing cell line services for POU3F1
Sirion Biotech Customized inducible overexpressing cell line services for POU3F1

In Situ Assay
Products:
   

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for POU3F1


(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways  About this table 
See pathways by source

Super-pathwaycontained gene-specific pathways
1Transcription factors in neurogenesis
Transcription factors in neurogenesis1.00

Pathway sources
See GeneCards unified pathways
Show all pathways

1 EMD Millipore Pathway for POU3F1
    Transcription factors in neurogenesis




POU3F1 for pathways           About GeneDecksing

Interactions:

    SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for POU3F1

STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

5 Interacting proteins for POU3F1 (Q030523 ENSP000003621034) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
HMGA1P170963, ENSP000003082274I2D: score=2 STRING: ENSP00000308227
HMGB2P265833, ENSP000002965034I2D: score=1 STRING: ENSP00000296503
POU3F4P493353, ENSP000003622964I2D: score=2 STRING: ENSP00000362296
POU3F2P202653I2D: score=1 
POU3F3P202643I2D: score=1 
About this table

Gene Ontology (GO): 5/12 biological process terms (GO ID links to tree view) (see all 12):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006351transcription, DNA-dependent ----
GO:0006355regulation of transcription, DNA-dependent ----
GO:0008366axon ensheathment TAS8662541
GO:0008544epidermis development ----
GO:0010628positive regulation of gene expression ISS--

POU3F1 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for POU3F1
Search CenterWatch for drugs/clinical trials and news about POU3F1 / PO3F1 

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for POU3F1 gene: 
NM_002699.3  

Unigene Cluster for POU3F1:

POU class 3 homeobox 1
Hs.1837  [show with all ESTs]
Unigene Representative Sequence: NM_002699
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000373012(uc001ccp.1)

miRNA
Products:
     
OriGene 3'-UTR Clone: POU3F1
Browse OriGene MicroRNA Expression Plasmids
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat POU3F1
8/64 QIAGEN miScript miRNA Assays for microRNAs that regulate POU3F1 (see all 64):
hsa-miR-323-3p hsa-miR-1224-3p hsa-miR-218-1* hsa-miR-1260b hsa-miR-138-2* hsa-miR-342-3p hsa-miR-502-3p hsa-miR-629*
SwitchGear 3'UTR luciferase reporter plasmidPOU3F1 3' UTR sequence
Inhib. RNA
Products:
     
Browse for Gene Knock-down Tools from EMD Millipore
OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for POU3F1 (see all 7)
OriGene shRNA RFP: POU3F1
OriGene siRNA: POU3F1
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat POU3F1
Sirion Biotech Custom design and validation of potent shRNA sequences against POU3F1 
Clone
Products:
     
OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for POU3F1 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for POU3F1
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
GenScript: all cDNA clones in your preferred vector: POU3F1 (NM_002699)
DNA2.0 Custom Codon Optimized Gene Synthesis Service for POU3F1
Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat POU3F1 
Primer
Products:
    
OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for POU3F1
Browse OriGene validated miRNA SYBR primer pairs
SABiosciences RT2 qPCR Primer Assay in human, mouse, rat POU3F1
  QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat POU3F1
  QIAGEN QuantiFast Probe-based Assays in human, mouse, rat POU3F1

Additional cDNA sequence: 

L26494.1 S81257.1 

3 DOTS entries:

DT.303774  DT.92417853  DT.100697072 

14 AceView cDNA sequences:

CR611990 BE326578 H89079 BF438187 AL583550 AI807330 AL565480 L26494 
NM_002699 Z18284 S81257 AA341505 BQ276805 BU960108 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

POU3F1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TAAATATGTG
POU3F1 Expression
About this image

POU3F1 expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell 
Tissue Anatomical Compartment CellCategory (developmental path)
KidneyRenal VesicleKidney
Expression: Positive    Negative     Selective marker
Experimental details: Curated     Microarrays     In-situ hybridization
Stem Cell Differentiation: 2 LifeMap Cells 
NameCategory
N2/LSB/S/F8-induced cells (Generation of midbra...)
Epiblast-like cells (Reconstitution of mo...)

See POU3F1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for POU3F1

SOURCE GeneReport for Unigene cluster: Hs.1837

UniProtKB/Swiss-Prot: PO3F1_HUMAN, Q03052
Tissue specificity: Expressed in embryonal stem cells and in the developing brain

    SABiosciences Custom PCR Arrays for POU3F1
Primer
Products:
OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for POU3F1
Browse OriGene validated miRNA SYBR primer pairs
SABiosciences RT2 qPCR Primer Assay in human, mouse, rat POU3F1
QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat POU3F1
QIAGEN QuantiFast Probe-based Assays in human, mouse, rat POU3F1
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for POU3F1

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for POU3F1 gene from 17 species (see representative species )    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chimpanzee
(Pan troglodytes)
Mammalia LOC4692876
--
88(a)
1 ↔ 1
1(38282052-38442304)
mouse
(Mus musculus)
Mammalia Pou3f11 , 5 POU domain, class 3, transcription factor 11, 5 93.99(n)1
99.33(a)1
  4 (57.86 cM)5
189911  NM_011141.21  NP_035271.11 
 1246568075 
rat
(Rattus norvegicus)
Mammalia Pou3f11 POU class 3 homeobox 1 93.57(n)
99.33(a)
  192110  NM_138838.1  NP_620193.1 
cow
(Bos taurus)
Mammalia POU3F11 POU class 3 homeobox 1 94.9(n)
99.11(a)
  617830  NM_001105451.1  NP_001098921.1 
dog
(Canis familiaris)
Mammalia LOC1008556941 POU domain, class 3, transcription factor 1-like 94.87(n)
98.64(a)
  100855694  XM_003639500.1  XP_003639548.1 
oppossum
(Monodelphis domestica)
Mammalia POU3F16
Uncharacterized protein
87(a)
1 ↔ 1
4(421718660-421719997)
chicken
(Gallus gallus)
Aves POU3F11 POU domain, class 3, transcription factor 1 80.52(n)
78.22(a)
  430270  NM_001031584.1  NP_001026755.1 
African clawed frog
(Xenopus laevis)
Amphibia pou1-A2 POU 1 transcription factor 76.91(n)    BC043847.1 
zebrafish
(Danio rerio)
Actinopterygii pou3f11 POU class 3 homeobox 1 69.09(n)
71.22(a)
  30398  NM_131161.1  NP_571236.1 
sea urchin
(Strongylocentrotus purpuratus)
Echinoidea --
--
34(a)
possible ortholog
scaffold_554(60127-61530)
fruit fly
(Drosophila melanogaster)
Insecta vvl3 peripheral nervous system development DNA
binding
83(a)
(best of 3)
  3 65C5   --
honey bee
(Apis mellifera)
Insecta --
--
35(a)
1 → many
Group10.10(99920-101299)
worm
(Caenorhabditis elegans)
Secernentea ceh-63 Homeobox domain, Pou domain - N-terminal to
homeobox more
70(a)   I(8506480-8510320)   --
schistosome parasite
(Schistosoma mansoni)
Trematoda Smp_1495706
Pou3/brn-1, putative
15(a)
possible ortholog
Smp_scaff000130(379355-389097)
common water flea
(Daphnia pulex)
Crustacea --
--
83(a)
1 → many
scaffold_86(434292-434795)
Trichoplax
(Trichoplax adhaerens)
Tricoplacia --
--
82(a)
possible ortholog
scaffold_5(3998310-3998762)
sea anemone
(Nematostella vectensis)
Anthozoa --
--
(see all 3)
--
69(a)
64(a)
(see all 3)
1 ↔ many
possible ortholog
(see all 3)
scaffold_262(71949-72503)
scaffold_450(6340-6777)
        Species with no ortholog for POU3F1

ENSEMBL Gene Tree for POU3F1 (if available)
TreeFam Gene Tree for POU3F1 (if available) 

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for POU3F1 gene
POU5F22  POU6F22  POU4F22  POU2F32  POU3F42  POU1F12  POU4F32  POU3F32  
POU3F22  POU2F22  POU5F1B2  POU2F12  POU4F12  POU5F12  POU6F12  
17 SIMAP similar genes for POU3F1 using alignment to 1 protein entry:     PO3F1_HUMAN:
OCT6    POU2F1    POU6F1    POU1F1    OCT-2    POU4F1
POU3F4    POU2F3    POU4F3    POU2F2    POU3F2    POU3F3
POU5F1    POU5F1P4    POU5F1P1    POU4F2    POU5F1B

POU3F1 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/43 NCBI SNPs in POU3F1 are shown (see all 43    About this table
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 1 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1897140351,2
--38509090(+) TGAAAA/GTTGGG 1 -- ds50010--------
rs729308661,2
C--38509157(+) GGGCTG/TCTTTC 1 -- ds50011Minor allele frequency- T:0.50WA 2
rs761652461,2
--38509187(+) GAGTTA/GTGCAT 1 -- ds50010--------
rs1152049831,2
--38509273(+) TGTCTA/GCGACA 1 -- ds50011Minor allele frequency- G:0.01NA 120
rs1392728951,2
--38509283(+) AGGGGA/GACACG 1 -- ds50010--------
rs2008798581,2
--38509576(+) CATTA-/TTTTTT 1 -- ut310--------
rs412682511,2
--38509676(+) AAACAC/GAAGAA 1 -- ut310--------
rs284189841,2
C--38509884(+) ATCTCA/CCATAT 1 -- ut312Minor allele frequency- C:0.00NA 4
rs348603891,2
C--38510154(+) GCAGAA/GGCCCC 1 -- ut314Minor allele frequency- G:0.33NA WA EA 360
rs1380249791,2
--38510267(+) TGTTA-/GTTTTT 1 -- ut310--------

HapMap Linkage Disequilibrium report for POU3F1 (38509523 - 38512450 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
      Database of Genomic Variants (DGV) variations for POU3F1: --

SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing POU3F1
DNA2.0 Custom Variant and Variant Library Synthesis for POU3F1

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

POU3F1 for disorders           About GeneDecksing

OMIM gene information: 602479    OMIM disorders: --

10 diseases for POU3F1:    About MalaCards
progressive multifocal leukoencephalopathy    peripheral neuropathy    bipolar disorder    rheumatoid arthritis
neuropathy    hepatocellular carcinoma    arthritis    schizophrenia
carcinoma    neuronitis

1 Novoseek disease relationship for POU3F1 gene    About this table

Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
schizophrenia 6.76 2 16246257 (1), 15006499 (1)


Export disorders for POU3F1 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for POU3F1 gene, integrated from 9 sources (see all 39):
(articles sorted by number of sources associating them with POU3F1)
    Utopia: connect your pdf to the dynamic
world of online information

  1. The human Oct-6 POU transcription factor lacks the first 50 amino acids of its murine counterpart. (PubMed id 8451175)1, 2, 3 Tobler A.... Fontana A. (1993)
  2. Oct-6: a regulator of keratinocyte gene expression in stratified squamous epithelia. (PubMed id 7909356)1, 2, 9 Faus I.... Fuchs E. (1994)
  3. Oct6, a transcription factor controlling myelination, is a marker for active nerve regeneration in peripheral neuropathies. (PubMed id 12557005)1, 9 Kawasaki T....Shibasaki H. (2003)
  4. Expression and activity of the POU transcription factor SCIP. (PubMed id 1975954)1, 9 Monuki E.S....Lemke G. (1990)
  5. Matrix metalloproteinase-19 expression in keratinocytes is repressed by transcription factors Tst-1 and Skn-1a: implications for keratinocyte differentiation. (PubMed id 17195013)1, 9 Beck I.M....Sedlacek R. (2007)
  6. Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. (PubMed id 22589738)1 Fox C.S....Borecki I.B. (2012)
  7. Aberrant CpG island hypermethylation and down-regulat ion of Oct-6 mRNA expression in human hepatocellular carcinoma. (PubMed id 21448695)1 Sun J.Z....Li M. (2011)
  8. Genome-wide association study meta-analysis identifie s seven new rheumatoid arthritis risk loci. (PubMed id 20453842)1 Stahl E.A....Plenge R.M. (2010)
  9. Misexpression of Pou3f1 results in peripheral nerve hypomyelination and axonal loss. (PubMed id 17959798)1 Ryu E.J....Milbrandt J. (2007)
  10. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)2 Gregory S.G.... Bentley D.R. (2006)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Disorders
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 5453 HGNC: 9214 AceView: POU3F1 Ensembl:ENSG00000185668 euGenes: HUgn5453
ECgene: POU3F1 H-InvDB: POU3F1

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for POU3F1 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for POU3F1 gene:
Search GeneIP for patents involving POU3F1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section

 
 EMD Millipore Custom Antibody & Bulk Services
 EMD Millipore Preclinical / Clinical Development Services
 EMD Millipore Immunoassay Services
 EMD Millipore Target Screening & Profiling Services

  
 Browse Antibodies   Browse Cell Culture Products  
 Browse ELISAs   Browse Flow Cytometry Kits  
 Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
 Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
 Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
 Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
 Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
 Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
 OriGene Antibodies for POU3F1   OriGene shRNA RFP for POU3F1  
 OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for POU3F1   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for POU3F1  
 OriGene Protein Over-expression Lysate for POU3F1   Browse OriGene Fluorogenic Cell Assay Kits  
 OriGene siRNA for POU3F1   OriGene 3'-UTR Clone for POU3F1  
 OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for POU3F1   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for POU3F1  
 Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
 Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
 Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
 OriGene Custom Antibody Services for POU3F1   OriGene Custom Protein Services for POU3F1  
 OriGene Custom Immunoassay Development  

 
 
 QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat POU3F1
 QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing POU3F1
 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat POU3F1
 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat POU3F1
 QIAGEN QuantiFast Probe-based Assays in human, mouse, rat POU3F1
 QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat POU3F1
 GenScript Custom Purified and Recombinant Proteins Services for POU3F1 GenScript cDNA clones with any tag delivered in your preferred vector for POU3F1
 GenScript Custom Assay Services for POU3F1 GenScript Custom Superior Antibodies Services for POU3F1
 GenScript Custom overexpressing Cell Line Services for POU3F1 CloneReady with Over 120,000 Genes
 Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
 Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
 Custom Peptide Services
 Search for Antibodies & Assays

 Regulatory tfbs in POU3F1 promoter
 Search Chromatin IP Primers for POU3F1
 RT2 qPCR Primer Assay in human, mouse, rat POU3F1
 GNC Network for POU3F1
 SABiosciences Custom PCR Arrays for POU3F1
 Search Tocris compounds for POU3F1
 Browse Sino Biological Proteins and Antibodies
 Browse Sino Biological cDNA Clones
 Antibodies/Proteins Production Services
 Rabbit Monoclonal Antibody Platform
 Bulk Purchasing
 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
 Novus Tissue Slides
 POU3F1 antibodies
 POU3F1 lysates
 Antibodies for POU3F1
 See all of Abcam's Antibodies, Kits and Proteins for POU3F1
 Custom Antibody / Protein Production Service
 Bulk Purchasing
 Advantages of Rabbit Monoclonal antibodies
 Abcam protocols and scientific support
 Browse ProSpec Recombinant Proteins




 Browse ELISAs, CLIAs, Proteins, and Antibodies at Uscn
 Search LifeMap BioReagents cell lines for POU3F1
 Gene Synthesis
 Protein Engineering
 Variant Library Synthesis
 Codon Optimization
 Protein Production and Purification
 Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for POU3F1
 SwitchGear 3'UTR luciferase reporter plasmids for POU3F1
 Browse SwitchGear Promoter luciferase reporter plasmids for POU3F1
 Search ThermoFisher Antibodies for POU3F1
 Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat POU3F1
 inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for POU3F1
Sirion Biotech Customized:
 stable knockdown cell line services for POU3F1
 inducible knockdown cell line services for POU3F1
 design and validation of potent shRNA sequences against POU3F1
 adenovirus for potent knockdown of POU3F1
 adenovirus for overexpression of POU3F1
 stable overexpressing cell line services for POU3F1
 inducible overexpressing cell line services for POU3F1
       
GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 14 May 2013

View Random Gene

Category
VWF
(GIFTS: 73)
von Willebrand factor
GIFtS Group
The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes      Disease genes      POU3F1 gene at Home site.
hostname: 356980-web2.xennexinc.com index build: 106 solr: 1.4