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Aliases for POTED Gene

Aliases for POTED Gene

  • POTE Ankyrin Domain Family, Member D 2 3
  • ANKRD21 3 4 6
  • POTE 3 4 6
  • Ankyrin Repeat Domain-Containing Protein 21 3 4
  • Prostate, Ovary, Testis-Expressed Protein 3 4
  • ANKRD26-Like Family B, Member 3 2 3
  • ANKRD26-Like Family B Member 3 3 4
  • Ankyrin Repeat Domain 21 2 3
  • A26B3 3 4
  • Expressed In Prostate, Ovary, Testis, And Placenta 3
  • Cancer/Testis Antigen Family 104, Member 1 3
  • POTE Ankyrin Domain Family Member D 3
  • Cancer/Testis Antigen Family 104 2
  • Protein POTE 4
  • Member 1 2
  • CT104.1 3
  • POTE-21 3
  • POTE21 3

External Ids for POTED Gene

Previous HGNC Symbols for POTED Gene

  • ANKRD21
  • A26B3

Previous GeneCards Identifiers for POTED Gene

  • GC21P013910
  • GC21P014982

Summaries for POTED Gene

GeneCards Summary for POTED Gene

POTED (POTE Ankyrin Domain Family, Member D) is a Protein Coding gene. An important paralog of this gene is POTEJ.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for POTED Gene

Genomics for POTED Gene

Regulatory Elements for POTED Gene

Genomic Location for POTED Gene

Start:
13,609,858 bp from pter
End:
13,641,585 bp from pter
Size:
31,728 bases
Orientation:
Plus strand

Genomic View for POTED Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for POTED Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for POTED Gene

Proteins for POTED Gene

  • Protein details for POTED Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86YR6-POTED_HUMAN
    Recommended name:
    POTE ankyrin domain family member D
    Protein Accession:
    Q86YR6
    Secondary Accessions:
    • C9JCF7

    Protein attributes for POTED Gene

    Size:
    584 amino acids
    Molecular mass:
    66394 Da
    Quaternary structure:
    No Data Available

neXtProt entry for POTED Gene

Proteomics data for POTED Gene at MOPED

Post-translational modifications for POTED Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for POTED Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for POTED Gene

Domains for POTED Gene

Gene Families for POTED Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing
  • POTE :POTE ankyrin domain containing

Protein Domains for POTED Gene

Suggested Antigen Peptide Sequences for POTED Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86YR6

UniProtKB/Swiss-Prot:

POTED_HUMAN :
  • Q86YR6
Family:
  • Belongs to the POTE family.
Similarity:
  • Contains 6 ANK repeats.
genes like me logo Genes that share domains with POTED: view

Function for POTED Gene

Gene Ontology (GO) - Molecular Function for POTED Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with POTED: view

Phenotypes for POTED Gene

GenomeRNAi human phenotypes for POTED:
genes like me logo Genes that share phenotypes with POTED: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for POTED

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for POTED Gene

Localization for POTED Gene

Subcellular locations from UniProtKB/Swiss-Prot for POTED Gene

Cell membrane; Peripheral membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for POTED Gene COMPARTMENTS Subcellular localization image for POTED gene
Compartment Confidence
plasma membrane 5
cytosol 2
nucleus 2
cytoskeleton 1
endoplasmic reticulum 1
extracellular 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for POTED Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA --
genes like me logo Genes that share ontologies with POTED: view

Pathways for POTED Gene

SuperPathways for POTED Gene

No Data Available

Gene Ontology (GO) - Biological Process for POTED Gene

None

No data available for Pathways by source for POTED Gene

Transcripts for POTED Gene

mRNA/cDNA for POTED Gene

(2) Selected AceView cDNA sequences:
(3) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for POTED

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for POTED
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for POTED Gene

No ASD Table

Relevant External Links for POTED Gene

GeneLoc Exon Structure for
POTED
ECgene alternative splicing isoforms for
POTED

Expression for POTED Gene

mRNA expression in normal human tissues for POTED Gene

mRNA differential expression in normal tissues according to GTEx for POTED Gene

This gene is overexpressed in Testis (52.9).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for POTED Gene

mRNA Expression by UniProt/SwissProt for POTED Gene

Q86YR6-POTED_HUMAN
Tissue specificity: Expressed in prostate, ovary, testis, placenta and prostate cancer cell lines. Localizes to basal and terminal prostate epithelial cells.
genes like me logo Genes that share expressions with POTED: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for POTED Gene

Orthologs for POTED Gene

This gene was present in the common ancestor of chordates.

Orthologs for POTED Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 95 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 36
  • 6 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 7 (a)
ManyToMany
-- 36
  • 38 (a)
ManyToMany
-- 36
  • 12 (a)
ManyToMany
-- 36
  • 9 (a)
ManyToMany
-- 36
  • 6 (a)
ManyToMany
-- 36
  • 6 (a)
ManyToMany
-- 36
  • 37 (a)
ManyToMany
-- 36
  • 42 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm21119 36
  • 21 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 13 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 6 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 36
  • 11 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 36 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii ANKRD7 36
  • 6 (a)
OneToMany
Species with no ortholog for POTED:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for POTED Gene

ENSEMBL:
Gene Tree for POTED (if available)
TreeFam:
Gene Tree for POTED (if available)

Paralogs for POTED Gene

Selected SIMAP similar genes for POTED Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with POTED: view

Variants for POTED Gene

Sequence variations from dbSNP and Humsavar for POTED Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type MAF
rs1810858 -- 13,627,529(+) ACATT(A/G)TACAC intron-variant
rs1812283 -- 13,636,530(+) ATTTT(G/T)ACTAA intron-variant
rs2094852 -- 13,637,724(+) tcttc(A/T)ggtct intron-variant
rs2150356 -- 13,630,748(+) TTTCA(A/G)TGATA intron-variant
rs2156111 -- 13,608,573(+) CAGAG(C/G/T)CTTGC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for POTED Gene

Variant ID Type Subtype PubMed ID
esv2751923 CNV Loss 17911159
dgv1351e1 CNV Complex 17122850
dgv4670n71 CNV Loss 21882294
nsv442489 CNV CNV 18776908
essv5592 CNV CNV 17122850
nsv428383 CNV Loss 18775914
nsv470875 CNV Gain 18288195
nsv470876 CNV Loss 18288195
dgv36n64 CNV Loss 17921354
nsv515654 CNV Gain+Loss 19592680
dgv4673n71 CNV Loss 21882294
dgv1353e1 CNV Complex 17122850
dgv4675n71 CNV Loss 21882294
essv3511 CNV CNV 17122850
nsv469617 CNV Gain 16826518
nsv471708 CNV Loss 15918152
dgv1354e1 CNV Complex 17122850
esv21968 CNV Gain 19812545
nsv828819 CNV Gain 20364138
nsv913380 CNV Loss 21882294
nsv913381 CNV Gain 21882294
dgv803e199 CNV Deletion 23128226
dgv1355e1 CNV Complex 17122850
nsv834044 CNV Gain+Loss 17160897
nsv828821 CNV Gain 20364138
nsv512633 CNV Loss 21212237
nsv9849 CNV Gain+Loss 18304495
esv2674621 CNV Deletion 23128226
nsv913382 CNV Gain 21882294

Relevant External Links for POTED Gene

HapMap Linkage Disequilibrium report
POTED

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for POTED Gene

Disorders for POTED Gene

No disorders were found for POTED Gene.

No data available for UniProtKB/Swiss-Prot for POTED Gene

Publications for POTED Gene

  1. Duplication and extensive remodeling shaped POTE family genes encoding proteins containing ankyrin repeat and coiled coil domains. (PMID: 16364570) Hahn Y. … Lee B. (Gene 2006) 2 3 23
  2. POTE, a highly homologous gene family located on numerous chromosomes and expressed in prostate, ovary, testis, placenta, and prostate cancer. (PMID: 12475935) Bera T.K. … Pastan I. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 4
  3. Five POTE paralogs and their splice variants are expressed in human prostate and encode proteins of different lengths. (PMID: 15276201) Bera T.K. … Pastan I. (Gene 2004) 2 3 4
  4. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M. … Yaspo M.-L. (Nature 2000) 3 4
  5. Identification of the putrescine recognition site on polyamine transport protein PotE. (PMID: 10964926) Kashiwagi K. … Igarashi K. (J. Biol. Chem. 2000) 23

Products for POTED Gene

Sources for POTED Gene

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