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Aliases for POLR2I Gene

Aliases for POLR2I Gene

  • RNA Polymerase II Subunit I 2 3 5
  • DNA-Directed RNA Polymerase II Subunit I 3 4
  • RNA Polymerase II 14.5 KDa Subunit 3 4
  • RNA Polymerase II Subunit B9 3 4
  • RPB14.5 3 4
  • Polymerase (RNA) II (DNA Directed) Polypeptide I (14.5kD) 2
  • Polymerase (RNA) II (DNA Directed) Polypeptide I, 14.5kDa 3
  • DNA-Directed RNA Polymerase II 14.5 KDa Polypeptide 3
  • DNA-Directed RNA Polymerase II Subunit RPB9 3
  • Polymerase (RNA) II Subunit I 3
  • HRPB14.5 3
  • RPB9 3

External Ids for POLR2I Gene

Previous GeneCards Identifiers for POLR2I Gene

  • GC19M037243
  • GC19M037053
  • GC19M041280
  • GC19M041296
  • GC19M036604
  • GC19M033110

Summaries for POLR2I Gene

Entrez Gene Summary for POLR2I Gene

  • This gene encodes a subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. This subunit, in combination with two other polymerase subunits, forms the DNA binding domain of the polymerase, a groove in which the DNA template is transcribed into RNA. The product of this gene has two zinc finger motifs with conserved cysteines and the subunit does possess zinc binding activity. [provided by RefSeq, Jul 2008]

GeneCards Summary for POLR2I Gene

POLR2I (RNA Polymerase II Subunit I) is a Protein Coding gene. Diseases associated with POLR2I include Hiv-1. Among its related pathways are HIV Life Cycle and Formation of HIV elongation complex in the absence of HIV Tat. GO annotations related to this gene include nucleic acid binding and DNA-directed 5-3 RNA polymerase activity.

UniProtKB/Swiss-Prot for POLR2I Gene

  • DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB9 is part of the upper jaw surrounding the central large cleft and thought to grab the incoming DNA template (By similarity).

Gene Wiki entry for POLR2I Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for POLR2I Gene

Genomics for POLR2I Gene

Regulatory Elements for POLR2I Gene

Enhancers for POLR2I Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G036113 1.2 ENCODE 19.4 +0.1 62 3.1 MLX CREB3L1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF416 ZNF548 ZNF263 TMEM147-AS1 ZNF850 ZNF567 ZNF345 ZNF529 ZNF568 ZNF420 ZNF461 KMT2B RBM42
GH19G035208 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +902.9 902922 7.1 CREB3L1 FEZF1 ZNF143 ZNF416 ZNF548 ZNF263 SP3 NFYC TBX21 MEF2D TMEM147-AS1 HAUS5 ZNF792 KMT2B KIAA0355 RBM42 ENSG00000267049 ENSG00000268947 ENSG00000267219 LRFN3
GH19G035152 2 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +962.7 962734 0.9 HDGF HNRNPUL1 PKNOX1 CREB3L1 AGO1 ARID4B SIN3A FEZF1 ZNF2 ZBTB7B KMT2B TMEM147-AS1 LSM14A RBM42 ENSG00000267049 ZNF792 HAUS5 KIAA0355 ENSG00000268947 ENSG00000271032
GH19G035113 2 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +997.3 997327 8.1 MLX AGO1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 LSM14A KIAA0355 LRFN3 RBM42 ENSG00000267219 LGI4 TMEM147-AS1 FXYD3 HAUS5 ZNF792
GH19G035701 2 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +412.7 412746 1.6 HDGF PKNOX1 ARID4B SIN3A FEZF1 ZNF2 ZNF416 ZNF143 ZNF548 FOS ZNF567 TMEM147-AS1 U2AF1L4 HAUS5 ZNF792 KMT2B RBM42 COX6B1 ZNF146 LRFN3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around POLR2I on UCSC Golden Path with GeneCards custom track

Promoters for POLR2I Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000109113 246 2201 MLX CREB3L1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF416 ZNF548 ZNF263

Genomic Location for POLR2I Gene

Chromosome:
19
Start:
36,113,709 bp from pter
End:
36,115,346 bp from pter
Size:
1,638 bases
Orientation:
Minus strand

Genomic View for POLR2I Gene

Genes around POLR2I on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
POLR2I Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for POLR2I Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for POLR2I Gene

Proteins for POLR2I Gene

  • Protein details for POLR2I Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P36954-RPB9_HUMAN
    Recommended name:
    DNA-directed RNA polymerase II subunit RPB9
    Protein Accession:
    P36954
    Secondary Accessions:
    • B2R5J2
    • Q6NW05

    Protein attributes for POLR2I Gene

    Size:
    125 amino acids
    Molecular mass:
    14523 Da
    Quaternary structure:
    • Component of the RNA polymerase II (Pol II) complex consisting of 12 subunits.

    Three dimensional structures from OCA and Proteopedia for POLR2I Gene

neXtProt entry for POLR2I Gene

Post-translational modifications for POLR2I Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for POLR2I Gene

No data available for DME Specific Peptides for POLR2I Gene

Domains & Families for POLR2I Gene

Gene Families for POLR2I Gene

Suggested Antigen Peptide Sequences for POLR2I Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P36954

UniProtKB/Swiss-Prot:

RPB9_HUMAN :
  • Belongs to the archaeal RpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
Family:
  • Belongs to the archaeal RpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
genes like me logo Genes that share domains with POLR2I: view

Function for POLR2I Gene

Molecular function for POLR2I Gene

GENATLAS Biochemistry:
polymerase II,RNA (DNA directed) small polypeptide I (14.5kDa)
UniProtKB/Swiss-Prot Function:
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB9 is part of the upper jaw surrounding the central large cleft and thought to grab the incoming DNA template (By similarity).

Gene Ontology (GO) - Molecular Function for POLR2I Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0003899 DNA-directed 5-3 RNA polymerase activity TAS,IEA --
GO:0008270 zinc ion binding IEA,TAS --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with POLR2I: view
genes like me logo Genes that share phenotypes with POLR2I: view

Animal Model Products

CRISPR Products

miRNA for POLR2I Gene

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for POLR2I Gene

Localization for POLR2I Gene

Subcellular locations from UniProtKB/Swiss-Prot for POLR2I Gene

Nucleus, nucleolus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for POLR2I gene
Compartment Confidence
nucleus 5
extracellular 3

Gene Ontology (GO) - Cellular Components for POLR2I Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA,IEA 9852112
GO:0005654 nucleoplasm TAS --
GO:0005665 DNA-directed RNA polymerase II, core complex IDA 9852112
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with POLR2I: view

Pathways & Interactions for POLR2I Gene

SuperPathways for POLR2I Gene

SuperPathway Contained pathways
1 Formation of HIV elongation complex in the absence of HIV Tat
2 RNA Polymerase II Transcription Initiation And Promoter Clearance
3 mRNA Capping
4 HIV Life Cycle
.45
5 Transcription-Coupled Nucleotide Excision Repair (TC-NER)
genes like me logo Genes that share pathways with POLR2I: view

Gene Ontology (GO) - Biological Process for POLR2I Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000398 mRNA splicing, via spliceosome TAS --
GO:0006283 transcription-coupled nucleotide-excision repair TAS --
GO:0006351 transcription, DNA-templated TAS,IEA --
GO:0006366 transcription from RNA polymerase II promoter TAS --
GO:0006367 transcription initiation from RNA polymerase II promoter TAS --
genes like me logo Genes that share ontologies with POLR2I: view

No data available for SIGNOR curated interactions for POLR2I Gene

Drugs & Compounds for POLR2I Gene

(4) Drugs for POLR2I Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Adenosine triphosphate Approved Nutra 0
Cytidine triphosphate Experimental Pharma 0
Guanosine triphosphate Experimental Pharma 0
Uridine triphosphate Experimental Pharma 0

(1) Additional Compounds for POLR2I Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
pyrophosphate
  • (4-)Diphosphoric acid ion
  • (P2O74-)Diphosphate
  • Diphosphate
  • Diphosphoric acid
  • PPi
14000-31-8
genes like me logo Genes that share compounds with POLR2I: view

Transcripts for POLR2I Gene

Unigene Clusters for POLR2I Gene

Polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for POLR2I Gene

No ASD Table

Relevant External Links for POLR2I Gene

GeneLoc Exon Structure for
POLR2I
ECgene alternative splicing isoforms for
POLR2I

Expression for POLR2I Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for POLR2I Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for POLR2I Gene

This gene is overexpressed in Peripheral blood mononuclear cells (43.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for POLR2I Gene



Protein tissue co-expression partners for POLR2I Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of POLR2I Gene:

POLR2I

SOURCE GeneReport for Unigene cluster for POLR2I Gene:

Hs.47062

Evidence on tissue expression from TISSUES for POLR2I Gene

  • Nervous system(4.5)
  • Muscle(2.9)
genes like me logo Genes that share expression patterns with POLR2I: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for POLR2I Gene

Orthologs for POLR2I Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for POLR2I Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia POLR2I 35
  • 100 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia POLR2I 34 35
  • 99.47 (n)
dog
(Canis familiaris)
Mammalia POLR2I 34 35
  • 94.13 (n)
cow
(Bos Taurus)
Mammalia POLR2I 34 35
  • 93.33 (n)
mouse
(Mus musculus)
Mammalia Polr2i 34 16 35
  • 91.73 (n)
chicken
(Gallus gallus)
Aves POLR2I 34 35
  • 85.33 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia polr2i 34
  • 77.07 (n)
Str.10772 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.6193 34
zebrafish
(Danio rerio)
Actinopterygii polr2i 34 35
  • 80.44 (n)
wufc56a08 34
fruit fly
(Drosophila melanogaster)
Insecta RpII15 36 34 35
  • 77.78 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008393 34
  • 75.5 (n)
worm
(Caenorhabditis elegans)
Secernentea Y97E10AR.5 36
  • 62 (a)
rpb-9 34 35
  • 61.29 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFL088W 34
  • 53.4 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0D03234g 34
  • 48.46 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPB9 34 35 37
  • 46.6 (n)
rice
(Oryza sativa)
Liliopsida Os12g0560400 34
  • 64.1 (n)
barley
(Hordeum vulgare)
Liliopsida Hv.5887 34
sea squirt
(Ciona savignyi)
Ascidiacea CSA.1691 35
  • 75 (a)
OneToOne
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rpb9 34
  • 50.3 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.7809 34
Species where no ortholog for POLR2I was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for POLR2I Gene

ENSEMBL:
Gene Tree for POLR2I (if available)
TreeFam:
Gene Tree for POLR2I (if available)

Paralogs for POLR2I Gene

No data available for Paralogs for POLR2I Gene

Variants for POLR2I Gene

Sequence variations from dbSNP and Humsavar for POLR2I Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000451021 -- 36,115,441(+) GCGGA(G/T)TGGTC nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000549581 -- 36,116,748(+) CCCAG(A/C)CTCCC intron-variant, upstream-variant-2KB
rs1001152552 -- 36,115,513(+) AGCGG(A/G)TGTGA nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001171651 -- 36,114,324(+) GCTCA(A/G)GGCCC intron-variant, upstream-variant-2KB
rs1001269753 -- 36,115,324(+) CGTGA(A/T)CTATG nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for POLR2I Gene

Variant ID Type Subtype PubMed ID
nsv833815 CNV loss 17160897

Variation tolerance for POLR2I Gene

Residual Variation Intolerance Score: 42.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.17; 3.79% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for POLR2I Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
POLR2I

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for POLR2I Gene

Disorders for POLR2I Gene

MalaCards: The human disease database

(1) MalaCards diseases for POLR2I Gene - From: GeneCards

Disorder Aliases PubMed IDs
hiv-1
  • aids, slow progression to
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for POLR2I

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
POLR2I
genes like me logo Genes that share disorders with POLR2I: view

No data available for UniProtKB/Swiss-Prot and Genatlas for POLR2I Gene

Publications for POLR2I Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Immunoaffinity purification and functional characterization of human transcription factor IIH and RNA polymerase II from clonal cell lines that conditionally express epitope-tagged subunits of the multiprotein complexes. (PMID: 9852112) Kershnar E. … Chiang C.-M. (J. Biol. Chem. 1998) 3 4 64
  4. Chromosomal localization of human RNA polymerase II subunit genes. (PMID: 8034326) Acker J. … Kedinger C. (Genomics 1994) 2 3 64
  5. Structure of the gene encoding the 14.5 kDa subunit of human RNA polymerase II. (PMID: 8265347) Acker J. … Kedinger C. (Nucleic Acids Res. 1993) 3 4 64

Products for POLR2I Gene

Sources for POLR2I Gene

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