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Aliases for POLR2G Gene

Aliases for POLR2G Gene

  • Polymerase (RNA) II (DNA Directed) Polypeptide G 2 3
  • DNA-Directed RNA Polymerase II Subunit G 3 4
  • RNA Polymerase II 19 KDa Subunit 3 4
  • RNA Polymerase II Subunit B7 3 4
  • RPB19 3 4
  • RPB7 3 4
  • DNA Directed RNA Polymerase II 19 Kda Polypeptide 3
  • DNA-Directed RNA Polymerase II 19 KDa Polypeptide 3
  • DNA-Directed RNA Polymerase II Subunit RPB7 3
  • RNA Polymerase II Seventh Subunit 3
  • HRPB19 3
  • HsRPB7 3

External Ids for POLR2G Gene

Previous GeneCards Identifiers for POLR2G Gene

  • GC11P065041
  • GC11P064104
  • GC11P062779
  • GC11P062304
  • GC11P062285
  • GC11P062529
  • GC11P058857

Summaries for POLR2G Gene

Entrez Gene Summary for POLR2G Gene

  • This gene encodes the seventh largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. The protein functions in transcription initiation, and is also thought to help stabilize transcribing polyermase molecules during elongation. [provided by RefSeq, Jan 2009]

GeneCards Summary for POLR2G Gene

POLR2G (Polymerase (RNA) II (DNA Directed) Polypeptide G) is a Protein Coding gene. Diseases associated with POLR2G include hiv-1. Among its related pathways are Disease and Epstein-Barr virus infection. GO annotations related to this gene include RNA binding and DNA-directed RNA polymerase activity.

UniProtKB/Swiss-Prot for POLR2G Gene

  • DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB7 is part of a subcomplex with RPB4 that binds to a pocket formed by RPB1, RPB2 and RPB6 at the base of the clamp element. The RBP4-RPB7 subcomplex seems to lock the clamp via RPB7 in the closed conformation thus preventing double-stranded DNA to enter the active site cleft. The RPB4-RPB7 subcomplex binds single-stranded DNA and RNA (By similarity). Binds RNA.

Gene Wiki entry for POLR2G Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for POLR2G Gene

Genomics for POLR2G Gene

Regulatory Elements for POLR2G Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for POLR2G Gene

Start:
62,761,539 bp from pter
End:
62,766,715 bp from pter
Size:
5,177 bases
Orientation:
Plus strand

Genomic View for POLR2G Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for POLR2G Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for POLR2G Gene

Proteins for POLR2G Gene

  • Protein details for POLR2G Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P62487-RPB7_HUMAN
    Recommended name:
    DNA-directed RNA polymerase II subunit RPB7
    Protein Accession:
    P62487
    Secondary Accessions:
    • B2R5C0
    • P52433
    • Q2M1Z4

    Protein attributes for POLR2G Gene

    Size:
    172 amino acids
    Molecular mass:
    19294 Da
    Quaternary structure:
    • Component of the RNA polymerase II (Pol II) complex consisting of 12 subunits. RPB4 and RPB7 form a subcomplex that protrudes from the 10-subunit Pol II core complex.

    Three dimensional structures from OCA and Proteopedia for POLR2G Gene

neXtProt entry for POLR2G Gene

Proteomics data for POLR2G Gene at MOPED

Post-translational modifications for POLR2G Gene

  • Ubiquitination at Lys27, Lys71, and Lys81
  • Modification sites at PhosphoSitePlus

Other Protein References for POLR2G Gene

Antibody Products

No data available for DME Specific Peptides for POLR2G Gene

Domains for POLR2G Gene

Gene Families for POLR2G Gene

HGNC:
  • POLR :RNA polymerase subunits

Protein Domains for POLR2G Gene

Suggested Antigen Peptide Sequences for POLR2G Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P62487

UniProtKB/Swiss-Prot:

RPB7_HUMAN :
  • P62487
Family:
  • Belongs to the eukaryotic RPB7/RPC8 RNA polymerase subunit family.
genes like me logo Genes that share domains with POLR2G: view

Function for POLR2G Gene

Molecular function for POLR2G Gene

GENATLAS Biochemistry: polymerase II,RNA (DNA dependent,polypeptide G,expressed in retina,brain,kidney,closely linked to D11S1765)
UniProtKB/Swiss-Prot Function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB7 is part of a subcomplex with RPB4 that binds to a pocket formed by RPB1, RPB2 and RPB6 at the base of the clamp element. The RBP4-RPB7 subcomplex seems to lock the clamp via RPB7 in the closed conformation thus preventing double-stranded DNA to enter the active site cleft. The RPB4-RPB7 subcomplex binds single-stranded DNA and RNA (By similarity). Binds RNA.

Gene Ontology (GO) - Molecular Function for POLR2G Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003697 single-stranded DNA binding IBA --
GO:0003727 single-stranded RNA binding IBA --
GO:0003899 contributes_to DNA-directed RNA polymerase activity IBA --
GO:0031369 translation initiation factor binding IBA --
genes like me logo Genes that share ontologies with POLR2G: view
genes like me logo Genes that share phenotypes with POLR2G: view

Animal Model Products

CRISPR Products

miRNA for POLR2G Gene

miRTarBase miRNAs that target POLR2G

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for POLR2G

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for POLR2G Gene

Localization for POLR2G Gene

Subcellular locations from UniProtKB/Swiss-Prot for POLR2G Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for POLR2G Gene COMPARTMENTS Subcellular localization image for POLR2G gene
Compartment Confidence
nucleus 5
cytoskeleton 3
cytosol 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for POLR2G Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000932 cytoplasmic mRNA processing body IBA --
GO:0005634 nucleus IDA 9852112
GO:0005654 nucleoplasm TAS --
GO:0005665 DNA-directed RNA polymerase II, core complex IDA 9852112
GO:0005730 nucleolus IDA --
genes like me logo Genes that share ontologies with POLR2G: view

Pathways for POLR2G Gene

SuperPathways for POLR2G Gene

Superpath Contained pathways
1 Formation of RNA Pol II elongation complex
2 DNA Repair
3 mRNA Splicing - Major Pathway
4 HIV Life Cycle
5 Purine metabolism (KEGG)
genes like me logo Genes that share pathways with POLR2G: view

Gene Ontology (GO) - Biological Process for POLR2G Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic IBA --
GO:0000398 mRNA splicing, via spliceosome TAS --
GO:0006281 DNA repair TAS --
GO:0006283 transcription-coupled nucleotide-excision repair TAS --
GO:0006289 nucleotide-excision repair TAS --
genes like me logo Genes that share ontologies with POLR2G: view

Transcripts for POLR2G Gene

mRNA/cDNA for POLR2G Gene

Unigene Clusters for POLR2G Gene

Polymerase (RNA) II (DNA directed) polypeptide G:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for POLR2G

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for POLR2G Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c · 2d · 2e ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6 ^ 7
SP1: - - - - -
SP2: - - - -
SP3: - - - -
SP4: - - - - - -
SP5: - - - -
SP6: - - -
SP7: -

Relevant External Links for POLR2G Gene

GeneLoc Exon Structure for
POLR2G
ECgene alternative splicing isoforms for
POLR2G

Expression for POLR2G Gene

mRNA expression in normal human tissues for POLR2G Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for POLR2G Gene

SOURCE GeneReport for Unigene cluster for POLR2G Gene Hs.14839

genes like me logo Genes that share expressions with POLR2G: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for POLR2G Gene

Orthologs for POLR2G Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for POLR2G Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia POLR2G 35
  • 100 (n)
  • 100 (a)
POLR2G 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia POLR2G 35
  • 93.22 (n)
  • 100 (a)
POLR2G 36
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia POLR2G 35
  • 94.96 (n)
  • 100 (a)
POLR2G 36
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Polr2g 35
  • 90.31 (n)
  • 100 (a)
Polr2g 16
Polr2g 36
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia POLR2G 36
  • 97 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia POLR2G 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Polr2g 35
  • 90.89 (n)
  • 100 (a)
lizard
(Anolis carolinensis)
Reptilia POLR2G 36
  • 96 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia polr2g 35
  • 80.62 (n)
  • 98.84 (a)
zebrafish
(Danio rerio)
Actinopterygii polr2gl 35
  • 80.81 (n)
  • 98.84 (a)
polr2gl 36
  • 99 (a)
OneToOne
wufc18d05 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP002121 35
  • 70.54 (n)
  • 77.91 (a)
fruit fly
(Drosophila melanogaster)
Insecta Rpb7 35
  • 70.74 (n)
  • 81.4 (a)
Rpb7 36
  • 81 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea rpb-7 35
  • 69.19 (n)
  • 76.74 (a)
rpb-7 36
  • 67 (a)
OneToOne
Y54E10BR.6 37
  • 77 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFR402C 35
  • 52.66 (n)
  • 44.97 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPB7 35
  • 49.11 (n)
  • 43.79 (a)
RPB7 36
  • 43 (a)
OneToOne
RPB7 38
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0C06787g 35
  • 50.49 (n)
  • 43.79 (a)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.4671 35
thale cress
(Arabidopsis thaliana)
eudicotyledons NRPB7 35
  • 58.67 (n)
  • 53.8 (a)
rice
(Oryza sativa)
Liliopsida Os05g0400700 35
  • 61.01 (n)
  • 53.22 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rpb7 35
  • 57.68 (n)
  • 52.69 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.7943 36
  • 88 (a)
OneToOne
Species with no ortholog for POLR2G:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for POLR2G Gene

ENSEMBL:
Gene Tree for POLR2G (if available)
TreeFam:
Gene Tree for POLR2G (if available)

Paralogs for POLR2G Gene

No data available for Paralogs for POLR2G Gene

Variants for POLR2G Gene

Sequence variations from dbSNP and Humsavar for POLR2G Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs3795 -- 62,766,632(-) ACCAG(A/T)TGCCT utr-variant-3-prime
rs486723 -- 62,765,044(-) CCGTC(A/T)TTACT intron-variant
rs557939 -- 62,766,901(-) GACCC(A/C)ACATC downstream-variant-500B
rs640681 -- 62,765,043(+) TAGTA(A/G)TGACG intron-variant
rs1045097 -- 62,766,575(+) GTCCA(A/G)AGGTC utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for POLR2G Gene

Variant ID Type Subtype PubMed ID
nsv897623 CNV Loss 21882294
nsv483055 CNV Loss 15286789

Relevant External Links for POLR2G Gene

HapMap Linkage Disequilibrium report
POLR2G

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for POLR2G Gene

Disorders for POLR2G Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for POLR2G Gene including...

Search for POLR2G Gene in MalaCards »
genes like me logo Genes that share disorders with POLR2G: view

No data available for UniProtKB/Swiss-Prot for POLR2G Gene

Publications for POLR2G Gene

  1. Human RNA polymerase II subunit hsRPB7 functions in yeast and influences stress survival and cell morphology. (PMID: 7579693) Khazak V. … Golemis E.A. (Mol. Biol. Cell 1995) 2 3 4 23
  2. Human gene for the RNA polymerase II seventh subunit (hsRPB7): structure, expression and chromosomal localization. (PMID: 9256063) Schoen T.J. … Rodriguez I.R. (Biochim. Biophys. Acta 1997) 2 3 4
  3. Immunoaffinity purification and functional characterization of human transcription factor IIH and RNA polymerase II from clonal cell lines that conditionally express epitope-tagged subunits of the multiprotein complexes. (PMID: 9852112) Kershnar E. … Chiang C.-M. (J. Biol. Chem. 1998) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Crystal structure and RNA binding of the Rpb4/Rpb7 subunits of human RNA polymerase II. (PMID: 16282592) Meka H. … Brick P. (Nucleic Acids Res. 2005) 3 4

Products for POLR2G Gene

Sources for POLR2G Gene

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