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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

POLR2C Gene

protein-coding   GIFtS: 63
GCID: GC16P057496

polymerase (RNA) II (DNA directed) polypeptide C, 33kDa

(Previous name: polymerase (RNA) II (DNA directed) polypeptide C (33kD)...)
 Explore 6 diseases affiliated with
POLR2C via our new
 Human Malady Compendium 
Biological research products
for POLR2C
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Polymerase (RNA) II (DNA Directed) Polypeptide C, 33kDa1 2     RNA Polymerase II Subunit 32 3
RPB31 2     RNA Polymerase II Subunit B32 3
RPB312 3     Polymerase (RNA) II (DNA Directed) Polypeptide C (33kD)1
RPB332 3     DNA-Directed RNA Polymerase II Subunit RPB32
DNA-Directed RNA Polymerase II 33 KDa Polypeptide2 3     HRPB331
DNA-Directed RNA Polymerase II Subunit C2 3     HsRPB31

External Ids:    HGNC: 91891   Entrez Gene: 54322   Ensembl: ENSG000001029787   OMIM: 1806635   UniProtKB: P193873   

Export aliases for POLR2C gene to outside databases

Previous GC identifers: GC16P047891 GC16P057556 GC16P057230 GC16P057271 GC16P056054 GC16P043364


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for POLR2C:
This gene encodes the third largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger
RNA in eukaryotes. The product of this gene contains a cysteine rich region and exists as a heterodimer with another
polymerase subunit, POLR2J. These two subunits form a core subassembly unit of the polymerase. A pseudogene has been
identified on chromosome 21. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: RPB3_HUMAN, P19387
Function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside
triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional
non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is
composed of mobile elements that move relative to each other. RPB3 is part of the core element with the central large
cleft and the clamp element that moves to open and close the cleft (By similarity)

Gene Wiki entry for POLR2C


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000016.9  NC_018927.1  NT_010498.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the POLR2C gene promoter:
         MyoD   CUTL1   CREB   MEF-2A   deltaCREB   aMEF-2   Meis-1a   Zic3   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidPOLR2C promoter sequence
   Search SABiosciences Chromatin IP Primers for POLR2C

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat POLR2C


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16q13-q21   Ensembl cytogenetic band:  16q21   HGNC cytogenetic band: 16q13-q21

POLR2C Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
POLR2C gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16P057496:  view genomic region     (about GC identifiers)

Start:
57,496,299 bp from pter      End:
57,505,922 bp from pter
Size:
9,624 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RPB3_HUMAN, P19387 (See protein sequence)
Recommended Name: DNA-directed RNA polymerase II subunit RPB3  
Size: 275 amino acids; 31441 Da
Subunit: Component of the RNA polymerase II (Pol II) complex consisting of 12 subunits. RPB11/POLR2J and RPB3/POLR2C
subunits interact with each other
Subcellular location: Nucleus
Secondary accessions: O15161

Explore the universe of human proteins at neXtProt for POLR2C: NX_P19387

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P19387

  • POLR2C Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_116558.1  
    ENSEMBL proteins: 
     ENSP00000219252   ENSP00000456367  
    Reactome Protein details: P19387
    Human Recombinant Protein Products: 
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    Novus Biologicals POLR2C Proteins
    Novus Biologicals POLR2C Lysate
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for POLR2C

    Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA--
    GO:0005654nucleoplasm TAS--
    GO:0005665DNA-directed RNA polymerase II, core complex IDA9852112
    GO:0005730NOT nucleolus IDA--
    GO:0005737cytoplasm IEA--


    POLR2C for ontologies           About GeneDecksing



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    Uscn ELISAs and CLIAs for POLR2C


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    POLR2C for domains           About GeneDecksing

    5 InterPro domains/families:
     IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3
     IPR011262 DNA-dir_RNA_pol_insert
     IPR011261 DNA-dir_RNA_pol_dimersation
     IPR001514 DNA-dir_RNA_pol_30-40kDasu_CS
     IPR009025 DNA-dir_RNA_pol_RBP11-like

    Graphical View of Domain Structure for InterPro Entry P19387

    ProtoNet protein and cluster: P19387

    1 Blocks protein family: IPB001514 DNA-directed RNA polymerase

    UniProtKB/Swiss-Prot: RPB3_HUMAN, P19387
    Similarity: Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: RPB3_HUMAN, P19387
    Function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside
    triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional
    non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is
    composed of mobile elements that move relative to each other. RPB3 is part of the core element with the central large
    cleft and the clamp element that moves to open and close the cleft (By similarity)

         Genatlas biochemistry entry for POLR2C:
    polymerase II,RNA (DNA directed) small polypeptide C (33kDa)

    miRNA
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    hsa-let-7b (MIRT001607)

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    hsa-miR-549 hsa-miR-137 hsa-miR-192* hsa-miR-218
    SwitchGear 3'UTR luciferase reporter plasmidPOLR2C 3' UTR sequence
    Inhib. RNA
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    Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
    GO:0003899DNA-directed RNA polymerase activity IEA--
    GO:0005515protein binding ----
    GO:0046983protein dimerization activity IEA--


    POLR2C for ontologies           About GeneDecksing


    4 GenomeRNAi human phenotypes for POLR2C:
     Decreased viability of wild-ty  Increased S DNA content  S arrest  Upregulation of Wnt/beta-caten 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/25 super-pathways (see all 25About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Formation of RNA Pol II elongation complex
    8/35 pathways (see all 35)
    RNA Polymerase II Transcription Elongation1.00
    RNA Pol II CTD phosphorylation and interaction with CE0.55
    Formation of HIV-1 elongation complex in the absence of HIV-1 Tat1.00
    Dual incision reaction in TC-NER0.46
    Formation of RNA Pol II elongation complex 1.00
    Formation of transcription-coupled NER (TC-NER) repair complex0.46
    Formation of HIV-1 elongation complex containing HIV-1 Tat0.98
    Addition of the fourth nucleotide on the nascent HIV-1 transcript: Second Transition0.40
    2mRNA Splicing - Major Pathway
    mRNA Splicing1.00
    mRNA Processing0.82
    mRNA Splicing - Major Pathway1.00
    mRNA Splicing - Minor Pathway0.40
    Processing of Capped Intron-Containing Pre-mRNA0.96
    3Assembly of RNA Polymerase-II Initiation Complex
    Assembly of RNA Polymerase-II Initiation Complex1.00
    Protein Acetylation and Deacetylation0.51
    Transcription of mRNA0.91
    Crosstalk Between CARM1 and ESRs0.32
    4HIV Infection
    HIV Infection1.00
    Transcription Ligand-Dependent Transcription of Retinoid-Target genes0.28
    Transcription_Ligand-Dependent Transcription of Retinoid-Target genes0.28
    5Nucleotide Excision Repair
    Nucleotide Excision Repair1.00
    DNA Repair0.46
    Transcription-coupled NER (TC-NER)0.90

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    3 EMD Millipore Pathways for POLR2C
        Transcription Ligand-Dependent Transcription of Retinoid-Target genes
    DNA damage Role of Brca1 and Brca2 in DNA repair
    ATP/ITP metabolism

    5/17 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for POLR2C (see all 17)
        Nuclear Receptor Activation by Vitamin-A
    Telomerase Components in Cell Signaling
    Androgen Signaling
    NF-kappaB Activation by Viruses
    Crosstalk Between CARM1 and ESRs

    3 GeneGo (Thomson Reuters) Pathways for POLR2C
        DNA damage Role of Brca1 and Brca2 in DNA repair
    ATP/ITP metabolism
    Transcription Ligand-Dependent Transcription of Retinoid-Target genes

    1 BioSystems Pathway for POLR2C 
        Eukaryotic Transcription Initiation

    5/49        Reactome Pathways for POLR2C (see all 49)
        Tat-mediated HIV-1 elongation arrest and recovery
    Tat-mediated elongation of the HIV-1 transcript
    mRNA Splicing
    RNA Polymerase II Transcription Initiation And Promoter Clearance
    Addition of the fourth nucleotide on the Nascent Transcript: Second Transition


    5         Kegg Pathways  (Kegg details for POLR2C):
        Purine metabolism
    Pyrimidine metabolism
    Metabolic pathways
    RNA polymerase
    Huntington's disease


    POLR2C for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for POLR2C

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/391 Interacting proteins for POLR2C (P193872, 3 ENSP000002192524) via UniProtKB, MINT, STRING, and/or I2D (see all 391)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UBE2WQ96B022, 3, ENSP000003974534MINT-63530 I2D: score=5 STRING: ENSP00000397453
    C14orf1Q9UKR52, 3MINT-63532 I2D: score=5 
    STC2O760612, 3MINT-63527 I2D: score=5 
    LRIF1Q5T3J32, 3MINT-63531 I2D: score=4 
    ATF4P188482, 3, ENSP000003367904MINT-49646 MINT-49647 MINT-49645 MINT-49644 MINT-49643 I2D: score=4 STRING: ENSP00000336790
    About this table

    Gene Ontology (GO): 5/12 biological process terms (GO ID links to tree view) (see all 12):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000398mRNA splicing, via spliceosome TAS--
    GO:0006281DNA repair TAS--
    GO:0006283transcription-coupled nucleotide-excision repair TAS--
    GO:0006289nucleotide-excision repair TAS--
    GO:0006366transcription from RNA polymerase II promoter TAS--


    POLR2C for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    EMD Millipore small molecules for POLR2C:
    Small Molecule - inhibitor
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for POLR2C
    Search CenterWatch for drugs/clinical trials and news about POLR2C / RPB3 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for POLR2C gene (2 alternative transcripts): 
    NM_032940.2  NM_002694.2  

    Unigene Cluster for POLR2C:

    Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa
    Hs.79402  [show with all ESTs]
    Unigene Representative Sequence: NM_032940
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000219252(uc002elt.1) ENST00000563115(uc010vhq.2) ENST00000562953
    ENST00000562599 ENST00000564651 ENST00000567982 ENST00000564626 ENST00000563589


    miRNA
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    hsa-miR-549 hsa-miR-137 hsa-miR-192* hsa-miR-218
    SwitchGear 3'UTR luciferase reporter plasmidPOLR2C 3' UTR sequence
    Inhib. RNA
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    Additional cDNA sequence: 

    AF008443.1 AJ224144.1 AK293112.1 AK295582.1 AK300124.1 BC000409.2 BC003159.1 BC028157.1 
    CR542041.1 J05448.1 

    18 DOTS entries:

    DT.100733658  DT.454003  DT.100673226  DT.419003  DT.95168015  DT.95168017  DT.100887494  DT.100765430 
    DT.100887499  DT.100887510  DT.95078452  DT.120657520  DT.100887511  DT.92457518  DT.95168020  DT.95320158 
    DT.120657607  DT.75161520 

    24/376 AceView cDNA sequences (see all 376):

    BQ639537 CK819530 BM702967 BU839414 CR620330 CD107266 AW236275 BQ777113 
    CR600374 BF818831 CR615834 BU070573 AI335813 AI356679 BE882336 CA941597 
    BM557631 CR594917 BE563113 BC003159 BE646255 CR606923 AA323628 BE889808 

    GeneLoc Exon Structure

    5/6 Alternative Splicing Database (ASD) splice patterns (SP) for POLR2C (see all 6)    About this scheme

    ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b
    SP1:              -                                   -           -     -                     
    SP2:              -                                   -           -                           
    SP3:              -                                   -                                       
    SP4:              -                                                                           
    SP5:                                                                                          


    ECgene alternative splicing isoforms for POLR2C

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    POLR2C expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CACAAAGCAG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See POLR2C Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for POLR2C

    SOURCE GeneReport for Unigene cluster: Hs.79402
        SABiosciences Custom PCR Arrays for POLR2C
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for POLR2C

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for POLR2C gene from 9/41 species (see all 41)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves POLR2C1 polymerase (RNA) II (DNA directed) polypeptide C, 33kDa 84(n)
    96.36(a)
      415635  XM_414001.2  XP_414001.1 
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    --
    97(a)
    79(a)
    1 ↔ many
    1 ↔ many
    GL343675.1(192484-199473)
    GL343202.1(2889123-2889766)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.168832 Xenopus laevis transcribed sequence with strong similarity more 79.09(n)    CA972428.1 
    zebrafish
    (Danio rerio)
    Actinopterygii wufk48d012 wufk48d01 78.84(n)   334669  BC046047.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta RpII331 , 3 transcription from Pol II promoter
    DNA-directed more3
    RNA polymerase II 33kD subunit1
    69(a)3
    68.73(n)1
    69.34(a)1
      34D63
    347961  NM_058071.31  NP_477419.11 
    worm
    (Caenorhabditis elegans)
    Secernentea C36B1.33
    rpb-31
    DNA directed RNA polymerase II3
    Protein RPB-31
    56(a)3
    57.74(n)1
    57.99(a)1
      I(8736829-8738823)3
    1726801  NM_059960.51  NP_492361.21 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes RPB3(YIL021W)4
    RPB31
    RNA polymerase II third largest subunit B44, part of more4
    Rpb3p1
    51.92(n)1
    47.31(a)1
      9(312905-313861)4
    8547911, 4  NP_012243.31  NP_012243.14 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons NRPB31 DNA-directed RNA polymerase II subunit RPB3-A 49.87(n)
    48.02(a)
      816035  NM_127103.2  NP_179145.1 
    rice
    (Oryza sativa)
    Liliopsida Os.55102 Oryza sativa (japonica cultivar-group) cDNA clone0 more 70.22(n)    AK120034.1 


    ENSEMBL Gene Tree for POLR2C (if available)
    TreeFam Gene Tree for POLR2C (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for POLR2C gene

    POLR2C for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for POLR2C
    PGOHUM00000239146


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/193 NCBI SNPs in POLR2C are shown (see all 193    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 16 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1112299261,2
    --43362283(+) TGTTCG/ACGAGA 1 -- ut311Minor allele frequency- A:0.50CSA 2
    rs1120758301,2
    C,--43362595(+) CAGCTC/TATCTC 1 -- ut312Minor allele frequency- T:0.12CSA WA 119
    rs2238691,2
    C,F,A,H,--43362640(+) CCTTGC/AAGCCC 1 -- ut3118Minor allele frequency- A:0.16EA NA NS CSA WA 2011
    rs1151230161,2
    C,F,--43362729(+) GGACAG/TAGGTG 1 -- ut311Minor allele frequency- T:0.03WA 118
    rs115474811,2
    C--43362766(-) TGCATG/TCTGGT 1 -- ut312Minor allele frequency- T:0.00NA 4
    rs1903726431,2
    --57494914(+) CCAGAA/GTCAAG 2 -- us2k1 ut310--------
    rs2238701,2
    C,F,H,--57495026(+) TGCTGC/TTCCTG 2 -- ut31 us2k121Minor allele frequency- T:0.01EA NA MN NS WA CSA 1029
    rs1396506881,2
    --57495106(+) GTGTCA/GCATGA 2 -- us2k1 ut310--------
    rs1400365611,2
    C,--57495368(+) GTAAC-/AGAAGCC 2 -- ds5001 us2k10--------
    rs1428421631,2
    --57495439(+) TTTAGC/GCCCAG 2 -- ds5001 us2k10--------

    HapMap Linkage Disequilibrium report for POLR2C (57496299 - 57505922 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 2 variations for POLR2C
         2 Indels: 77356 88147

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing POLR2C
    DNA2.0 Custom Variant and Variant Library Synthesis for POLR2C

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    POLR2C for disorders           About GeneDecksing

    OMIM gene information: 180663    OMIM disorders: --

    6 diseases for POLR2C:    About MalaCards
    shigellosis    huntington's disease    conjunctivitis    psoriasis
    immunodeficiency    malaria

    Human Genome Epidemiology (HuGE) Navigator: POLR2C (2 documents)

    Export disorders for POLR2C gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for POLR2C gene, integrated from 9 sources (see all 133):
    (articles sorted by number of sources associating them with POLR2C)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    2. Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PubMed id 10493829)1, 2 Loftus B.J.... Adams M.D. (1999)
    3. Cloning and characterization of the human RNA polymerase I subunit hRPA40. (PubMed id 9540830)1, 2 Dammann R. and Pfeifer G.P. (1998)
    4. Immunoaffinity purification and functional characterization of human transcription factor IIH and RNA polymerase II from clonal cell lines that conditionally express epitope-tagged subunits of the multiprotein complexes. (PubMed id 9852112)1, 2 Kershnar E.... Chiang C.-M. (1998)
    5. Chromosomal localization of human RNA polymerase II subunit genes. (PubMed id 8034326)1, 3 Acker J....Kedinger C. (1994)
    6. The amino acid sequence of the human RNA polymerase II 33-kDa subunit hRPB 33 is highly conserved among eukaryotes. (PubMed id 2187864)1, 2 Pati U.K. and Weissman S.M. (1990)
    7. RNA polymerase II subunit 3 is retained in the cytoplasm by its interaction with HCR, the psoriasis vulgaris candidate gene product. (PubMed id 16141233)1, 9 Corbi N....Passananti C. (2005)
    8. The alpha-like RNA polymerase II core subunit 3 (RPB3) is involved in tissue-specific transcription and muscle differentiation via interaction with the myogenic factor myogenin. (PubMed id 12207009)1, 9 Corbi N....Passananti C. (2002)
    9. Functional dissection of lysine deacetylases reveals t hat HDAC1 and p300 regulate AMPK. (PubMed id 22318606)1 Lin Y.Y....Boeke J.D. (2012)
    10. A high-throughput approach for measuring temporal chan ges in the interactome. (PubMed id 22863883)1 Kristensen A.R....Foster L.J. (2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 5432 HGNC: 9189 AceView: POLR2C Ensembl:ENSG00000102978 euGenes: HUgn5432
    ECgene: POLR2C Kegg: 5432 H-InvDB: POLR2C

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for POLR2C Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for POLR2C gene:
    Search GeneIP for patents involving POLR2C

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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