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Aliases for POF1B Gene

Aliases for POF1B Gene

  • Premature Ovarian Failure, 1B 2 3
  • Premature Ovarian Failure Protein 1B 3 4
  • POF2B 3
  • POF 3

External Ids for POF1B Gene

Previous GeneCards Identifiers for POF1B Gene

  • GC0XM079912
  • GC0XM081608
  • GC0XM082568
  • GC0XM083304
  • GC0XM084338
  • GC0XM084532
  • GC0XM078105

Summaries for POF1B Gene

Entrez Gene Summary for POF1B Gene

  • Premature ovarian failure (POF) is characterized by primary or secondary amenorrhea in women less than 40 years old. Two POF susceptibility regions called "POF1" and "POF2" have been identified by breakpoint mapping of X-autosome translocations. POF1 extends from Xq21-qter while POF2 extends from Xq13.3 to Xq21.1. This gene, POF1B, resides in the POF2 region. This gene is expressed at trace levels in mouse prenatal ovary and is barely detectable or absent from adult ovary, in human and in the mouse respectively. This gene's expression is restricted to epithelia with its highest expression in the epidermis, and oro-pharyngeal and gastro-intestinal tracts. The protein encoded by this gene binds non-muscle actin filaments. The role this gene may play in the etiology of premature ovarian failure remains to be determined. [provided by RefSeq, Jan 2010]

GeneCards Summary for POF1B Gene

POF1B (Premature Ovarian Failure, 1B) is a Protein Coding gene. Diseases associated with POF1B include premature ovarian failure 2b and premature ovarian failure. GO annotations related to this gene include actin binding.

UniProtKB/Swiss-Prot for POF1B Gene

  • Plays a key role in the organization of epithelial monolayers by regulating the actin cytoskeleton. May be involved in ovary development.

Gene Wiki entry for POF1B Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for POF1B Gene

Genomics for POF1B Gene

Genomic Location for POF1B Gene

Chromosome:
X
Start:
85,276,894 bp from pter
End:
85,379,743 bp from pter
Size:
102,850 bases
Orientation:
Minus strand

Genomic View for POF1B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for POF1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for POF1B Gene

Proteins for POF1B Gene

  • Protein details for POF1B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WVV4-POF1B_HUMAN
    Recommended name:
    Protein POF1B
    Protein Accession:
    Q8WVV4
    Secondary Accessions:
    • A8K2U5
    • Q5H9E9
    • Q5H9F0
    • Q8NG12
    • Q9H5Y2
    • Q9H738
    • Q9H744

    Protein attributes for POF1B Gene

    Size:
    589 amino acids
    Molecular mass:
    68065 Da
    Quaternary structure:
    • Interacts with nonmuscle actin.
    SequenceCaution:
    • Sequence=BAB15061.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB15485.1; Type=Frameshift; Positions=464; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for POF1B Gene

    Alternative splice isoforms for POF1B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for POF1B Gene

Proteomics data for POF1B Gene at MOPED

Post-translational modifications for POF1B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for POF1B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for POF1B Gene

Domains & Families for POF1B Gene

Protein Domains for POF1B Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for POF1B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with POF1B: view

No data available for Gene Families and UniProtKB/Swiss-Prot for POF1B Gene

Function for POF1B Gene

Molecular function for POF1B Gene

UniProtKB/Swiss-Prot Function:
Plays a key role in the organization of epithelial monolayers by regulating the actin cytoskeleton. May be involved in ovary development.

Gene Ontology (GO) - Molecular Function for POF1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003779 actin binding IEA --
genes like me logo Genes that share ontologies with POF1B: view

Phenotypes for POF1B Gene

MGI mutant phenotypes for POF1B:
inferred from 1 alleles
GenomeRNAi human phenotypes for POF1B:
genes like me logo Genes that share phenotypes with POF1B: view

Animal Models for POF1B Gene

MGI Knock Outs for POF1B:

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for POF1B Gene

Localization for POF1B Gene

Subcellular locations from UniProtKB/Swiss-Prot for POF1B Gene

Cell junction, tight junction.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for POF1B Gene COMPARTMENTS Subcellular localization image for POF1B gene
Compartment Confidence
cytoskeleton 1

Gene Ontology (GO) - Cellular Components for POF1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005923 bicellular tight junction IEA --
genes like me logo Genes that share ontologies with POF1B: view

Pathways & Interactions for POF1B Gene

SuperPathways for POF1B Gene

No Data Available

Interacting Proteins for POF1B Gene

Gene Ontology (GO) - Biological Process for POF1B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for POF1B Gene

Drugs & Compounds for POF1B Gene

No Compound Related Data Available

Transcripts for POF1B Gene

Unigene Clusters for POF1B Gene

Premature ovarian failure, 1B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for POF1B Gene

No ASD Table

Relevant External Links for POF1B Gene

GeneLoc Exon Structure for
POF1B
ECgene alternative splicing isoforms for
POF1B

Expression for POF1B Gene

mRNA expression in normal human tissues for POF1B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for POF1B Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x18.5), Skin - Not Sun Exposed (Suprapubic) (x13.8), and Colon - Transverse (x4.1).

Protein differential expression in normal tissues from HIPED for POF1B Gene

This gene is overexpressed in Cervix (51.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for POF1B Gene



SOURCE GeneReport for Unigene cluster for POF1B Gene Hs.267038

genes like me logo Genes that share expression patterns with POF1B: view

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for POF1B Gene

Orthologs for POF1B Gene

This gene was present in the common ancestor of chordates.

Orthologs for POF1B Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia POF1B 35
  • 89.64 (n)
  • 85.76 (a)
POF1B 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Pof1b 35
  • 87.96 (n)
  • 89.53 (a)
Pof1b 16
Pof1b 36
  • 90 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia POF1B 35
  • 99.77 (n)
  • 99.3 (a)
POF1B 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Pof1b 35
  • 88.48 (n)
  • 89.53 (a)
cow
(Bos Taurus)
Mammalia POF1B 36
  • 78 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia POF1B 36
  • 79 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia POF1B 36
  • 75 (a)
OneToOne
chicken
(Gallus gallus)
Aves POF1B 35
  • 62.85 (n)
  • 55.84 (a)
POF1B 36
  • 53 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia POF1B 36
  • 52 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia pof1b 35
  • 59.21 (n)
  • 52.77 (a)
zebrafish
(Danio rerio)
Actinopterygii pof1b 36
  • 29 (a)
OneToOne
Species with no ortholog for POF1B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for POF1B Gene

ENSEMBL:
Gene Tree for POF1B (if available)
TreeFam:
Gene Tree for POF1B (if available)

Paralogs for POF1B Gene

No data available for Paralogs for POF1B Gene

Variants for POF1B Gene

Sequence variations from dbSNP and Humsavar for POF1B Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs363747 -- 85,314,497(-) MAGAC(A/G)TTGAA reference, missense
rs363748 -- 85,314,450(-) CAGCA(A/C)ATACG reference, missense
rs363749 -- 85,314,358(-) AATTA(A/C)GAACA intron-variant
rs363750 -- 85,314,333(-) AAAAT(A/C)TTATT intron-variant
rs363751 - 85,314,502(-) GTCGG(A/C)AGACR reference, missense

Structural Variations from Database of Genomic Variants (DGV) for POF1B Gene

Variant ID Type Subtype PubMed ID
nsv820009 CNV Loss 19587683

Variation tolerance for POF1B Gene

Residual Variation Intolerance Score: 86.98% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.26; 52.79% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for POF1B Gene

HapMap Linkage Disequilibrium report
POF1B
Human Gene Mutation Database (HGMD)
POF1B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for POF1B Gene

Disorders for POF1B Gene

MalaCards: The human disease database

(6) MalaCards diseases for POF1B Gene - From: OMIM, ClinVar, GeneTests, Swiss-Prot, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
premature ovarian failure 2b
  • pof2b
premature ovarian failure
  • premature menopause
amenorrhea
  • amenorrhoea
female reproductive system disease
  • female reproductive system disorder
reproductive system disease
  • non-neoplastic reproductive system disease
- elite association
Search POF1B in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

POF1B_HUMAN
  • Premature ovarian failure 2B (POF2B) [MIM:300604]: An ovarian disorder defined as the cessation of ovarian function under the age of 40 years. It is characterized by oligomenorrhea or amenorrhea, in the presence of elevated levels of serum gonadotropins and low estradiol. {ECO:0000269 PubMed:16773570}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for POF1B

Genetic Association Database (GAD)
POF1B
Human Genome Epidemiology (HuGE) Navigator
POF1B
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
POF1B
genes like me logo Genes that share disorders with POF1B: view

No data available for Genatlas for POF1B Gene

Publications for POF1B Gene

  1. X chromosome genes and premature ovarian failure. (PMID: 11299520) Bione S. … Toniolo D. (Semin. Reprod. Med. 2000) 2 23 67
  2. Mutation analysis of two candidate genes for premature ovarian failure, DACH2 and POF1B. (PMID: 15459172) Bione S. … Toniolo D. (Hum. Reprod. 2004) 23 67
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  4. POF1B localizes to desmosomes and regulates cell adhesion in human intestinal and keratinocyte cell lines. (PMID: 25084053) Crespi A. … Pietrini G. (J. Invest. Dermatol. 2015) 67
  5. hnRNPA1 couples nuclear export and translation of specific mRNAs downstream of FGF-2/S6K2 signalling. (PMID: 25324306) Roy R. … Pardo O.E. (Nucleic Acids Res. 2014) 67

Products for POF1B Gene

Sources for POF1B Gene

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