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Aliases for POC1B-GALNT4 Gene

Aliases for POC1B-GALNT4 Gene

  • POC1B-GALNT4 Readthrough 2 3

External Ids for POC1B-GALNT4 Gene

Summaries for POC1B-GALNT4 Gene

Entrez Gene Summary for POC1B-GALNT4 Gene

  • This locus represents naturally occurring transcripts that splice the 5' exons of the POC1B (POC1 centriolar protein homolog B) gene on chromosome 12 to the GALNT4 (UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4) gene, which is located within a POC1B intron. Alternative splicing results in two transcript variants, one of which encodes a fusion isoform that shares sequence identity with the products of each individual gene. [provided by RefSeq, Dec 2010]

GeneCards Summary for POC1B-GALNT4 Gene

POC1B-GALNT4 (POC1B-GALNT4 Readthrough) is a Protein Coding gene. Among its related pathways are Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein and Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein. An important paralog of this gene is GALNT4.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for POC1B-GALNT4 Gene

Genomics for POC1B-GALNT4 Gene

Genomic Location for POC1B-GALNT4 Gene

Start:
89,519,408 bp from pter
End:
89,526,262 bp from pter
Size:
6,855 bases
Orientation:
Minus strand

Genomic View for POC1B-GALNT4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for POC1B-GALNT4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for POC1B-GALNT4 Gene

No data available for Regulatory Elements for POC1B-GALNT4 Gene

Proteins for POC1B-GALNT4 Gene

  • Protein details for POC1B-GALNT4 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    F8VUJ3-F8VUJ3
    Recommended name:
    Polypeptide N-acetylgalactosaminyltransferase
    Protein Accession:
    F8VUJ3
    Secondary Accessions:

    Protein attributes for POC1B-GALNT4 Gene

    Size:
    575 amino acids
    Molecular mass:
    66238 Da
    Cofactor:
    Name=Mn(2+); Xref=ChEBI:CHEBI:29035;
    Quaternary structure:
    No Data Available
  • Protein details for POC1B-GALNT4 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    F8VZB3-F8VZB3
    Recommended name:
    Protein POC1B-GALNT4
    Protein Accession:
    F8VZB3
    Secondary Accessions:

    Protein attributes for POC1B-GALNT4 Gene

    Size:
    42 amino acids
    Molecular mass:
    4501 Da
    Quaternary structure:
    No Data Available

neXtProt entry for POC1B-GALNT4 Gene

Proteomics data for POC1B-GALNT4 Gene at MOPED

Post-translational modifications for POC1B-GALNT4 Gene

No Post-translational modifications

Other Protein References for POC1B-GALNT4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for POC1B-GALNT4 Gene

Domains for POC1B-GALNT4 Gene

Protein Domains for POC1B-GALNT4 Gene

genes like me logo Genes that share domains with POC1B-GALNT4: view

No data available for Gene Families and UniProtKB/Swiss-Prot for POC1B-GALNT4 Gene

Function for POC1B-GALNT4 Gene

Gene Ontology (GO) - Molecular Function for POC1B-GALNT4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
GO:0016757 transferase activity, transferring glycosyl groups --
GO:0030246 carbohydrate binding --
GO:0046872 metal ion binding --
genes like me logo Genes that share ontologies with POC1B-GALNT4: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for POC1B-GALNT4 Gene

Localization for POC1B-GALNT4 Gene

Gene Ontology (GO) - Cellular Components for POC1B-GALNT4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005794 Golgi apparatus --
GO:0016021 integral component of membrane --
genes like me logo Genes that share ontologies with POC1B-GALNT4: view

Pathways for POC1B-GALNT4 Gene

genes like me logo Genes that share pathways with POC1B-GALNT4: view

Pathways by source for POC1B-GALNT4 Gene

Interacting Proteins for POC1B-GALNT4 Gene

Gene Ontology (GO) - Biological Process for POC1B-GALNT4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006486 protein glycosylation --
genes like me logo Genes that share ontologies with POC1B-GALNT4: view

Transcripts for POC1B-GALNT4 Gene

mRNA/cDNA for POC1B-GALNT4 Gene

(2) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for POC1B-GALNT4 Gene

No ASD Table

Relevant External Links for POC1B-GALNT4 Gene

GeneLoc Exon Structure for
POC1B-GALNT4
ECgene alternative splicing isoforms for
POC1B-GALNT4

Expression for POC1B-GALNT4 Gene

mRNA expression in normal human tissues for POC1B-GALNT4 Gene

genes like me logo Genes that share expressions with POC1B-GALNT4: view

Orthologs for POC1B-GALNT4 Gene

This gene was present in the common ancestor of chordates.

Orthologs for POC1B-GALNT4 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Galnt4 37
  • 87 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 73 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 74 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 74 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii poc1bl 37
  • 70 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4670 37
  • 61 (a)
OneToMany
Species with no ortholog for POC1B-GALNT4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for POC1B-GALNT4 Gene

ENSEMBL:
Gene Tree for POC1B-GALNT4 (if available)
TreeFam:
Gene Tree for POC1B-GALNT4 (if available)

Paralogs for POC1B-GALNT4 Gene

genes like me logo Genes that share paralogs with POC1B-GALNT4: view

Variants for POC1B-GALNT4 Gene

Structural Variations from Database of Genomic Variants (DGV) for POC1B-GALNT4 Gene

Variant ID Type Subtype PubMed ID
nsv832479 CNV Gain 17160897

Relevant External Links for POC1B-GALNT4 Gene

HapMap Linkage Disequilibrium report
POC1B-GALNT4

No data available for Sequence variations from dbSNP and Humsavar for POC1B-GALNT4 Gene

Disorders for POC1B-GALNT4 Gene

No disorders were found for POC1B-GALNT4 Gene.

No data available for UniProtKB/Swiss-Prot for POC1B-GALNT4 Gene

Publications for POC1B-GALNT4 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3

Products for POC1B-GALNT4 Gene

Sources for POC1B-GALNT4 Gene

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