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Aliases for PNPLA7 Gene

Aliases for PNPLA7 Gene

  • Patatin Like Phospholipase Domain Containing 7 2 3 5
  • C9orf111 3 4
  • Patatin-Like Phospholipase Domain-Containing Protein 7 3
  • Patatin-Like Phospholipase Domain Containing 7 2
  • Chromosome 9 Open Reading Frame 111 2
  • EC 3.1.1.5 61
  • EC 3.1.1.- 4
  • NTE-R1 3
  • NTEL1 3

External Ids for PNPLA7 Gene

Previous HGNC Symbols for PNPLA7 Gene

  • C9orf111

Previous GeneCards Identifiers for PNPLA7 Gene

  • GC09M139474
  • GC09M140354
  • GC09M109818

Summaries for PNPLA7 Gene

Entrez Gene Summary for PNPLA7 Gene

  • Human patatin-like phospholipases, such as PNPLA7, have been implicated in regulation of adipocyte differentiation and have been induced by metabolic stimuli (Wilson et al., 2006 [PubMed 16799181]).[supplied by OMIM, Jun 2008]

GeneCards Summary for PNPLA7 Gene

PNPLA7 (Patatin Like Phospholipase Domain Containing 7) is a Protein Coding gene. Among its related pathways are PI Metabolism and Glycerophospholipid biosynthesis. GO annotations related to this gene include lysophospholipase activity. An important paralog of this gene is PNPLA6.

UniProtKB/Swiss-Prot for PNPLA7 Gene

  • Serine hydrolase, whose specific chemical modification by certain organophosphorus (OP) compounds leads to distal axonopathy.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PNPLA7 Gene

Genomics for PNPLA7 Gene

Regulatory Elements for PNPLA7 Gene

Enhancers for PNPLA7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G137549 1.1 ENCODE 26.9 -0.3 -333 3.4 HDGF PKNOX1 FOXA2 ARNT AGO1 ARID4B SIN3A DMAP1 ZBTB7B ZNF143 PNPLA7 MRPL41 ZMYND19 DPH7
GH09G137592 1.4 FANTOM5 Ensembl ENCODE dbSUPER 16.3 -42.4 -42404 2.0 ESRRA KLF1 HLF ZNF384 ZBTB8A NR3C1 ZNF623 MTA1 SCRT2 GLIS1 EHMT1 PNPLA7 GRIN1 RNF208 CACNA1B TPRN ZMYND19 ARRDC1
GH09G137682 1.2 Ensembl ENCODE dbSUPER 14.6 -131.8 -131824 0.6 CTCF ZIC2 ZFHX2 GLIS2 ZNF366 EGR1 ZNF600 EGR2 BHLHE40 SP2 PNPLA7 EHMT1 ARRDC1-AS1 ARRDC1 ZMYND19 NOXA1 EXD3 SETP5 EHMT1-IT1
GH09G137756 1.7 FANTOM5 Ensembl ENCODE dbSUPER 6.3 -209.6 -209559 8.0 HDGF TBP PKNOX1 TBL1XR1 WRNIP1 NSD2 BMI1 ZBTB40 YY1 EGR1 EHMT1 LOC100418938 PNPLA7 ARRDC1 MRPL41 EHMT1-IT1 SETP5
GH09G137233 1.8 FANTOM5 ENCODE dbSUPER 3.8 +312.6 312590 9.9 MLX CREB3L1 AGO1 DMAP1 YY1 ZNF416 ZNF143 ZNF263 SP3 NFYC NDOR1 DPH7 TMEM203 NELFB LCN15 ABCA2 TOR4A UAP1L1 RNF224 CYSRT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PNPLA7 on UCSC Golden Path with GeneCards custom track

Promoters for PNPLA7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000243226 -505 2001 HDGF PKNOX1 FOXA2 ARNT AGO1 ARID4B SIN3A ZBTB7B ZNF143 ZNF207

Genomic Location for PNPLA7 Gene

Chromosome:
9
Start:
137,459,472 bp from pter
End:
137,550,895 bp from pter
Size:
91,424 bases
Orientation:
Minus strand

Genomic View for PNPLA7 Gene

Genes around PNPLA7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PNPLA7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PNPLA7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PNPLA7 Gene

Proteins for PNPLA7 Gene

  • Protein details for PNPLA7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZV29-PLPL7_HUMAN
    Recommended name:
    Patatin-like phospholipase domain-containing protein 7
    Protein Accession:
    Q6ZV29
    Secondary Accessions:
    • B5MDD3
    • Q5T364
    • Q658X0
    • Q658Y3
    • Q6ZTS1
    • Q86YU8
    • Q8TAY5
    • Q96N75
    • Q9H7N5

    Protein attributes for PNPLA7 Gene

    Size:
    1317 amino acids
    Molecular mass:
    145733 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB71033.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAI14579.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for PNPLA7 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PNPLA7 Gene

Selected DME Specific Peptides for PNPLA7 Gene

Q6ZV29:
  • RQADCILIVGLGDQEP
  • WRYVRASM
  • LVLGGGGARG
  • DRHSDFSRLARVLTGN
  • CVRQLEVVKSS

Post-translational modifications for PNPLA7 Gene

  • Glycosylation at Asn728, Asn975, Asn1014, and posLast=12331233
  • Modification sites at PhosphoSitePlus

Other Protein References for PNPLA7 Gene

Domains & Families for PNPLA7 Gene

Gene Families for PNPLA7 Gene

Suggested Antigen Peptide Sequences for PNPLA7 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6ZV29

UniProtKB/Swiss-Prot:

PLPL7_HUMAN :
  • Belongs to the NTE family.
Family:
  • Belongs to the NTE family.
genes like me logo Genes that share domains with PNPLA7: view

Function for PNPLA7 Gene

Molecular function for PNPLA7 Gene

UniProtKB/Swiss-Prot Function:
Serine hydrolase, whose specific chemical modification by certain organophosphorus (OP) compounds leads to distal axonopathy.

Enzyme Numbers (IUBMB) for PNPLA7 Gene

Gene Ontology (GO) - Molecular Function for PNPLA7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004622 lysophospholipase activity IBA --
GO:0016787 hydrolase activity IEA --
genes like me logo Genes that share ontologies with PNPLA7: view

Phenotypes for PNPLA7 Gene

GenomeRNAi human phenotypes for PNPLA7:
genes like me logo Genes that share phenotypes with PNPLA7: view

Animal Model Products

  • Taconic Biosciences Mouse Models for PNPLA7

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PNPLA7 Gene

Localization for PNPLA7 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PNPLA7 Gene

Membrane; Single-pass membrane protein. Nucleus membrane; Single-pass membrane protein. Mitochondrion membrane; Single-pass membrane protein. Lysosome membrane; Single-pass membrane protein. Microsome membrane; Single-pass membrane protein. Note=Found in the nuclear, mitochondrial, lysosomal, and microsomal fractions. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PNPLA7 gene
Compartment Confidence
mitochondrion 4
nucleus 4
endoplasmic reticulum 4
cytosol 3
lysosome 3
cytoskeleton 2
plasma membrane 1
peroxisome 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for PNPLA7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005739 mitochondrion IEA --
GO:0005764 lysosome IEA --
GO:0005765 lysosomal membrane IEA --
GO:0005783 endoplasmic reticulum IEA,IBA --
genes like me logo Genes that share ontologies with PNPLA7: view

Pathways & Interactions for PNPLA7 Gene

genes like me logo Genes that share pathways with PNPLA7: view

Pathways by source for PNPLA7 Gene

Interacting Proteins for PNPLA7 Gene

Gene Ontology (GO) - Biological Process for PNPLA7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006629 lipid metabolic process IEA --
GO:0008152 metabolic process IEA --
GO:0016042 lipid catabolic process IEA --
GO:0032502 developmental process IBA --
genes like me logo Genes that share ontologies with PNPLA7: view

No data available for SIGNOR curated interactions for PNPLA7 Gene

Drugs & Compounds for PNPLA7 Gene

(2) Drugs for PNPLA7 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Water Approved Pharma 0
Choline alfoscerate Experimental Pharma 0

(1) Additional Compounds for PNPLA7 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
sn-glycero-3-Phosphoethanolamine
genes like me logo Genes that share compounds with PNPLA7: view

Transcripts for PNPLA7 Gene

Unigene Clusters for PNPLA7 Gene

Patatin-like phospholipase domain containing 7:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PNPLA7 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21
SP1: -
SP2: -
SP3:
SP4:
SP5:
SP6:

Relevant External Links for PNPLA7 Gene

GeneLoc Exon Structure for
PNPLA7
ECgene alternative splicing isoforms for
PNPLA7

Expression for PNPLA7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PNPLA7 Gene

Protein differential expression in normal tissues from HIPED for PNPLA7 Gene

This gene is overexpressed in Liver, secretome (22.0), Peripheral blood mononuclear cells (15.4), Pancreatic juice (13.5), and Platelet (11.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for PNPLA7 Gene



NURSA nuclear receptor signaling pathways regulating expression of PNPLA7 Gene:

PNPLA7

SOURCE GeneReport for Unigene cluster for PNPLA7 Gene:

Hs.294147

Evidence on tissue expression from TISSUES for PNPLA7 Gene

  • Nervous system(4.3)
  • Liver(4.1)
  • Lymph node(4.1)
  • Spleen(4.1)
  • Stomach(4.1)
genes like me logo Genes that share expression patterns with PNPLA7: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for PNPLA7 Gene

Orthologs for PNPLA7 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for PNPLA7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PNPLA7 35
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PNPLA7 34 35
  • 84.66 (n)
cow
(Bos Taurus)
Mammalia PNPLA7 34 35
  • 84.13 (n)
rat
(Rattus norvegicus)
Mammalia Pnpla7 34
  • 81.09 (n)
mouse
(Mus musculus)
Mammalia Pnpla7 34 16 35
  • 80.73 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia PNPLA7 35
  • 74 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia PNPLA7 35
  • 65 (a)
OneToOne
chicken
(Gallus gallus)
Aves PNPLA7 34 35
  • 72.01 (n)
lizard
(Anolis carolinensis)
Reptilia PNPLA7 35
  • 69 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia pnpla6 34
  • 72.61 (n)
Str.17512 34
zebrafish
(Danio rerio)
Actinopterygii pnpla7a 35
  • 67 (a)
OneToMany
pnpla7b 34 35
  • 66.31 (n)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8816 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000467 34
  • 57 (n)
fruit fly
(Drosophila melanogaster)
Insecta sws 34 35
  • 53.47 (n)
worm
(Caenorhabditis elegans)
Secernentea ZK370.4 34 35
  • 48.27 (n)
M110.7 35
  • 33 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes NTE1 35
  • 20 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 45 (a)
OneToMany
Species where no ortholog for PNPLA7 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PNPLA7 Gene

ENSEMBL:
Gene Tree for PNPLA7 (if available)
TreeFam:
Gene Tree for PNPLA7 (if available)

Paralogs for PNPLA7 Gene

Paralogs for PNPLA7 Gene

(1) SIMAP similar genes for PNPLA7 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with PNPLA7: view

Variants for PNPLA7 Gene

Sequence variations from dbSNP and Humsavar for PNPLA7 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs587781103 Benign 137,459,023(-) AGTGC(A/G)GCGGG intron-variant, downstream-variant-500B
rs1000029510 -- 137,502,917(+) GATGA(C/T)GGGAT intron-variant
rs1000029641 -- 137,493,528(+) GGGAC(A/G)TTTGT intron-variant
rs1000080034 -- 137,472,205(+) AGGGG(C/G)CTCAG intron-variant
rs1000097915 -- 137,504,330(+) CCTCA(C/G)CCTCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PNPLA7 Gene

Variant ID Type Subtype PubMed ID
dgv1248n67 CNV gain 20364138
dgv1249n67 CNV gain 20364138
dgv13012n54 CNV loss 21841781
dgv1388e199 CNV deletion 23128226
dgv4179n106 CNV duplication 24896259
esv1491510 CNV deletion 17803354
esv1920878 CNV deletion 18987734
esv2007027 CNV deletion 18987734
esv2739454 CNV deletion 23290073
esv2739455 CNV deletion 23290073
esv2739456 CNV deletion 23290073
esv2739457 CNV deletion 23290073
esv2739458 CNV deletion 23290073
esv3369955 CNV duplication 20981092
esv3418530 CNV duplication 20981092
esv3545667 CNV deletion 23714750
esv3573432 CNV loss 25503493
esv3622035 CNV loss 21293372
esv3622037 CNV loss 21293372
esv992019 CNV insertion 20482838
nsv1075701 CNV deletion 25765185
nsv1078658 CNV duplication 25765185
nsv1119621 CNV deletion 24896259
nsv1126933 CNV deletion 24896259
nsv1142715 CNV deletion 24896259
nsv1152315 CNV duplication 26484159
nsv524322 CNV loss 19592680
nsv616023 CNV loss 21841781
nsv6772 CNV insertion 18451855
nsv831762 CNV loss 17160897
nsv831763 CNV loss 17160897
nsv951208 CNV deletion 24416366
nsv951209 CNV deletion 24416366
nsv951210 CNV deletion 24416366

Variation tolerance for PNPLA7 Gene

Residual Variation Intolerance Score: 99.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.63; 89.10% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PNPLA7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PNPLA7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PNPLA7 Gene

Disorders for PNPLA7 Gene

Relevant External Links for PNPLA7

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PNPLA7

No disorders were found for PNPLA7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PNPLA7 Gene

Publications for PNPLA7 Gene

  1. Mammalian patatin domain containing proteins: a family with diverse lipolytic activities involved in multiple biological functions. (PMID: 19029121) Kienesberger P.C. … Zechner R. (J. Lipid Res. 2009) 2 3 64
  2. Characterization of the human patatin-like phospholipase family. (PMID: 16799181) Wilson P.A. … Crowther D.J. (J. Lipid Res. 2006) 2 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. Loss of neuropathy target esterase in mice links organophosphate exposure to hyperactivity. (PMID: 12640454) Winrow C.J. … Barlow C. (Nat. Genet. 2003) 2 3 64
  5. Correlation analysis of the PNPLA7 gene polymorphism and susceptibility to menstrual disorder. (PMID: 25867316) Su Y. … Zhao Z.G. (Genet. Mol. Res. 2015) 3 64

Products for PNPLA7 Gene

Sources for PNPLA7 Gene

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