PNMA6C Gene
protein-coding GIFtS: 30
GCID: GC0XP152241
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paraneoplastic Ma antigen family member 6C(Previous name: paraneoplastic antigen like 6C )
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Aliases
for PNMA6C gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Paraneoplastic Ma Antigen Family Member 6C1 2 | | Paraneoplastic Antigen Like 6C1 2 | | Paraneoplastic Antigen-Like 6A Related Protein2 | | Paraneoplastic Antigen-Like Protein 6A Related2 | | Paraneoplastic Antigen-Like Protein 6C2 |
Export aliases for PNMA6C gene to outside databases |
Summaries
for PNMA6C gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for PNMA6C gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000023.10 NC_018934.1 NT_167198.1
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for PNMA6C
Other transcription factors
Search SABiosciences Chromatin IP Primers for PNMA6C
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PNMA6C |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: Xq28 Ensembl cytogenetic band: Xq28 HGNC cytogenetic band: Xq28PNMA6C Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome X GeneLoc Exon Structure GeneLoc location for GC0XP152241: view genomic region
(about GC identifiers)
Start:
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152,240,819 bp from pter |
End:
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152,243,402 bp from pter |
Size:
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2,584 bases |
Orientation:
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plus strand |
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Proteins
for PNMA6C gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: PNM6C_HUMAN, P0CW26 (See
protein sequence)Recommended Name: Paraneoplastic antigen-like protein 6C Size: 399 amino acids; 43875 Da
Secondary accessions: A8K1G4 D3DWT8 Q96A40Explore the universe of human proteins at neXtProt for PNMA6C: NX_P0CW26
PNMA6C Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_001164415.1
ENSEMBL proteins: ENSP00000391488
Human Recombinant Protein Products:
PNMA6C Antibody Products:
Assay Products for PNMA6C: |
Protein
Domains /
Families
for PNMA6C gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
PNMA6C for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry P0CW26ProtoNet protein and cluster: P0CW26 UniProtKB/Swiss-Prot: PNM6C_HUMAN, P0CW26Similarity: Belongs to the PNMA family |
Function
for PNMA6C gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for PNMA6C
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for PNMA6C
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript Custom all cDNA clones Services for PNMA6C | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PNMA6C | |  | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat PNMA6C |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PNMA6C |
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Pathways & Interactions
for PNMA6C gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for PNMA6C
1 Interacting protein for PNMA6C (P0CW263) via UniProtKB, MINT, STRING, and/or I2DAbout this table
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Drugs & Compounds
for PNMA6C gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for PNMA6C
Search CenterWatch for drugs/clinical trials and news about PNMA6C / PNM6C
|
Transcripts
for PNMA6C gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for PNMA6C gene: NM_001170944.1 Unigene Cluster for PNMA6C: Paraneoplastic Ma antigen family member 6C Hs.533301 [show with all ESTs]Unigene Representative Sequence: NM_0011709441 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000421798(uc011myl.2)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for PNMA6C
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for PNMA6C
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript Custom all cDNA clones Services for PNMA6C | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PNMA6C | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat PNMA6C |
Additional cDNA sequence: AK055322.1 AK289879.1 BC007631.1 2 DOTS entries: DT.91686535 DT.300089
GeneLoc Exon Structure
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Expression
for PNMA6C gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| PNMA6C expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See PNMA6C Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for PNMA6C
SOURCE GeneReport for Unigene cluster: Hs.533301
SABiosciences Custom PCR Arrays for PNMA6C
Primer
Products: | | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat PNMA6C | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat PNMA6C | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat PNMA6C | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PNMA6C |
Orthologs
for PNMA6C gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for PNMA6C (if available)
TreeFam Gene Tree for PNMA6C (if available) |
Paralogs
for PNMA6C gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for PNMA6C gene
- PNMA6D1 2 PNMA6A1 2 PNMA6B1 2 PNMA52 PNMA12 PNMA22 PNMA32 MOAP12
- PNMAL22 ZCCHC122 PNMAL12
8 SIMAP similar genes for PNMA6C using alignment to 1 protein entry: PNM6C_HUMAN:PNMA6A PNMA6B PNMA6D PNMA1 MOAP1 PNMA2
PNMA3 PNMA5
PNMA6C for paralogs About GeneDecksing
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Genomic Variants
for PNMA6C gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr X pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for PNMA6C (152240819 - 152243402 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for PNMA6C: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing PNMA6C |
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Disorders
/ Diseases
for PNMA6C gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for PNMA6C gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for PNMA6C gene integrated from 9 sources:
(articles sorted by number of sources associating them with PNMA6C) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- The DNA sequence of the human X chromosome. (PubMed id 15772651)2 Ross M.T.... Bentley D.R. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- The sequence of the human genome. (PubMed id 11181995)1 Venter J.C.... Zhu X. (2001)
- Generation and analysis of 280,000 human expressed sequence tags. (PubMed id 8889549)1 Hillier L.D....Marra M. (1996)
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External Searches for PNMA6C gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing PNMA6C gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing PNMA6C gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing PNMA6C gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
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About This Section
| Patent Information for PNMA6C gene:
Search GeneIP for patents involving PNMA6C
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for PNMA6C gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat PNMA6C | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing PNMA6C | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PNMA6C | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat PNMA6C | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat PNMA6C | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat PNMA6C |
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| | | | Search Tocris compounds for PNMA6C |
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 | | | PNMA6C Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PNMA6C |
|  |  |  | | | | ThermoFisher Antibodies for PNMA6C |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat PNMA6C |
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