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Aliases for PNMA6B Gene

Aliases for PNMA6B Gene

  • Paraneoplastic Ma Antigen Family Member 6B (Pseudogene) 2 3 5
  • Paraneoplastic Ma Antigen Family Member 6D (Pseudogene) 2 3
  • Paraneoplastic Antigen Like 6B 2 3
  • Paraneoplastic Antigen Like 6D 2 3
  • Paraneoplastic Ma Antigen Family Member 6B 2
  • Paraneoplastic Ma Antigen Family Member 6D 2
  • PNMA6D 3

External Ids for PNMA6B Gene

Previous HGNC Symbols for PNMA6B Gene

  • PNMA6D

Previous GeneCards Identifiers for PNMA6B Gene

  • GC0XM151994
  • GC00U922252
  • GC0XM152341

Summaries for PNMA6B Gene

GeneCards Summary for PNMA6B Gene

PNMA6B (Paraneoplastic Ma Antigen Family Member 6B (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PNMA6B Gene

Genomics for PNMA6B Gene

Regulatory Elements for PNMA6B Gene

Enhancers for PNMA6B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF153293 0.4 Ensembl 11.2 -215.9 -215945 1.1 ATF3 PNMA6B LOC728317 LOC105373377
GH0XF152988 0.7 Ensembl ENCODE 8.6 +88.5 88545 1.7 HDAC1 ATF1 PKNOX1 TBL1XR1 NFRKB CREM EGR2 ZNF263 ZEB2 HDAC8 PNMA5 PNMA6B PIR41506
GH0XF153383 1 FANTOM5 4.7 -305.8 -305790 0.3 ZNF493 ZNF266 ZNF140 ZNF488 MNT ZNF645 ZNF670 PRDM2 ZNF155 ZNF791 HCFC1 MAGEA1 ENSG00000234200 MAGEA6 MAGEA2B EMD MAGEA3 LOC105373383 PNMA6B SLC6A8
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around PNMA6B on UCSC Golden Path with GeneCards custom track

Promoters for PNMA6B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001919510 117 1001 FOS

Genomic Location for PNMA6B Gene

Chromosome:
X
Start:
153,075,613 bp from pter
End:
153,077,617 bp from pter
Size:
2,005 bases
Orientation:
Minus strand

Genomic View for PNMA6B Gene

Genes around PNMA6B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PNMA6B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PNMA6B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PNMA6B Gene

Proteins for PNMA6B Gene

Post-translational modifications for PNMA6B Gene

No Post-translational modifications

No data available for DME Specific Peptides for PNMA6B Gene

Domains & Families for PNMA6B Gene

Gene Families for PNMA6B Gene

Suggested Antigen Peptide Sequences for PNMA6B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PNMA6B: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for PNMA6B Gene

Function for PNMA6B Gene

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PNMA6B Gene

Localization for PNMA6B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PNMA6B Gene

Pathways & Interactions for PNMA6B Gene

SuperPathways for PNMA6B Gene

No Data Available

Interacting Proteins for PNMA6B Gene

Gene Ontology (GO) - Biological Process for PNMA6B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PNMA6B Gene

Transcripts for PNMA6B Gene

mRNA/cDNA for PNMA6B Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PNMA6B Gene

No ASD Table

Relevant External Links for PNMA6B Gene

GeneLoc Exon Structure for
PNMA6B
ECgene alternative splicing isoforms for
PNMA6B

Expression for PNMA6B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PNMA6B Gene

mRNA expression in normal human tissues for PNMA6B Gene

mRNA differential expression in normal tissues according to GTEx for PNMA6B Gene

This gene is overexpressed in Brain - Hypothalamus (x12.0), Brain - Frontal Cortex (BA9) (x11.4), Brain - Anterior cingulate cortex (BA24) (x7.7), Brain - Cortex (x5.6), and Brain - Substantia nigra (x4.3).

Protein differential expression in normal tissues from HIPED for PNMA6B Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for PNMA6B Gene



Protein tissue co-expression partners for PNMA6B Gene

NURSA nuclear receptor signaling pathways regulating expression of PNMA6B Gene:

PNMA6B
genes like me logo Genes that share expression patterns with PNMA6B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for PNMA6B Gene

Orthologs for PNMA6B Gene

Evolution for PNMA6B Gene

ENSEMBL:
Gene Tree for PNMA6B (if available)
TreeFam:
Gene Tree for PNMA6B (if available)

No data available for Orthologs for PNMA6B Gene

Paralogs for PNMA6B Gene

(8) SIMAP similar genes for PNMA6B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with PNMA6B: view

No data available for Paralogs for PNMA6B Gene

Variants for PNMA6B Gene

Relevant External Links for PNMA6B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PNMA6B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PNMA6B Gene

Disorders for PNMA6B Gene

No disorders were found for PNMA6B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PNMA6B Gene

Publications for PNMA6B Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 64
  3. The human PNMA family: novel neuronal proteins implicated in paraneoplastic neurological disease. (PMID: 16214224) Schueller M. … Voltz R. (J. Neuroimmunol. 2005) 3 64
  4. Comparative genome sequence analysis of the Bpa/Str region in mouse and man. (PMID: 10854409) Mallon A.-M. … Brown S.D.M. (Genome Res. 2000) 3 64
  5. Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. (PMID: 11256614) Simpson J.C. … Wiemann S. (EMBO Rep. 2000) 3 64

Products for PNMA6B Gene

Sources for PNMA6B Gene

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