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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

PNMA6A Gene

protein-coding GIFtS: 39
GCID: GC0XP152338

Paraneoplastic Ma Antigen Family Member 6A

(Previous name: paraneoplastic antigen like 6A)

2 related diseases
at

MalaCards

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
About This Section

Aliases
Paraneoplastic Ma Antigen Family Member 6A¹ ²
Paraneoplastic Antigen Like 6A¹ ²
MA6²
PNMA6²
Paraneoplastic Antigen-Like Protein 6A²

External Ids:	HGNC: 28248¹	Entrez Gene: 84968²	Ensembl: ENSG00000224201⁷	UniProtKB: P0CW24³

Export aliases for PNMA6A gene to outside databases

Previous GC identifers: GC0XP150859 GC0XP151911 GC0XP151991

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for PNMA6A Gene:

PNMA6A (paraneoplastic Ma antigen family member 6A) is a protein-coding gene. Diseases associated with PNMA6A include neurologic diseases, and neuronitis. An important paralog of this gene is PNMA5.

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000023.10 NC_018934.2 NT_167198.1

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the PNMA6A gene promoter:
CREB SREBP-1a deltaCREB SREBP-1c MyoD NRSF form 2 SREBP-1b
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: PNMA6A promoter sequence

Search SABiosciences Chromatin IP Primers for PNMA6A

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PNMA6A

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq28 Ensembl cytogenetic band: Xq28 HGNC cytogenetic band: Xq28

PNMA6A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
PNMA6A gene location

GeneLoc information about chromosome X GeneLoc Exon Structure

GeneLoc location for GC0XP152338: view genomic region (about GC identifiers)

Start:	152,240,839 bp from pter	End:	152,340,864 bp from pter
Size:	100,026 bases	Orientation:	plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: PNM6A_HUMAN, P0CW24 (See protein sequence)

Recommended Name: Paraneoplastic antigen-like protein 6A

Size: 399 amino acids; 44006 Da

Secondary accessions: A8K1G4 D3DWT8 Q96A40

Explore the universe of human proteins at neXtProt for PNMA6A: NX_P0CW24

Explore proteomics data for PNMA6A at MOPED

Post-translational modifications:

View modification sites using PhosphoSitePlus

View neXtProt modification sites for NX_P0CW24

PNMA6A Protein expression data from MOPED¹, PaxDb² and MAXQB³ : About this image

REFSEQ proteins: NP_116271.2

ENSEMBL proteins:

ENSP00000405718 ENSP00000441213

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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005737	cytoplasm	--	--

PNMA6A for ontologies About GeneDecksing

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

HGNC Gene Families:

PNMA: Paraneoplastic Ma antigens

1 InterPro protein domain:

IPR026523 PNMA

Graphical View of Domain Structure for InterPro Entry P0CW24

ProtoNet protein and cluster: P0CW24

UniProtKB/Swiss-Prot: PNM6A_HUMAN, P0CW24

Similarity: Belongs to the PNMA family

PNMA6A for domains About GeneDecksing

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for PNMA6A

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

1 Interacting protein for PNMA6A (P0CW24³ ENSP00000405718⁴) via UniProtKB, MINT, STRING, and/or I2D

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
PNMA1	Q8ND90³, ENSP00000318914⁴	I2D: score=5 STRING: ENSP00000318914

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, IUPHAR, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

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Search CenterWatch for drugs/clinical trials and news about PNMA6A / PNM6A

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for PNMA6A gene:

NM_032882.4

Unigene Cluster for PNMA6A:

Paraneoplastic Ma antigen family member 6A

Hs.721963 [show with all ESTs]

Unigene Representative Sequence: NM_032882

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000453825 ENST00000535416

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1 DOTS entry:

DT.91686535

24/41 AceView cDNA sequences (see all 41):

BG059973 AI675171 AI885740 CA392699 BM703493 N22466 BC007631 AW611713

CA392698 BM698946 AL538406 BM715325 BX423799 BX118395 BF508272 AI498794

AL567290 AK055322 BE311776 BX325209 BG116201 NM_032882 BX353874 BM669739

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

PNMA6A expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: ACTGTGGGAG

About this image

See PNMA6A Protein Expression from SPIRE MOPED and PaxDB
SOURCE GeneReport for Unigene cluster: Hs.721963

SABiosciences Custom PCR Arrays for PNMA6A

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of mammals.

Orthologs for PNMA6A gene from 1 species (see representative species ) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
dog (Canis familiaris)	Mammalia	--	--	72(a)	1 → many	X(120910842-120912251)

ENSEMBL Gene Tree for PNMA6A (if available)
TreeFam Gene Tree for PNMA6A (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for PNMA6A gene

PNMA6B¹ ² PNMA6C¹ ² PNMA6D¹ ² PNMA5² PNMA1² PNMA2² PNMAL2² MOAP1²

PNMA3² ZCCHC12² ZCCHC18² PNMAL1²

8 SIMAP similar genes for PNMA6A using alignment to 1 protein entry: PNM6A_HUMAN:

PNMA6B PNMA6C PNMA6D PNMA1 MOAP1 PNMA2

PNMA3 PNMA5

PNMA6A for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr X pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs200998932^1,2	--	--	152337890(+)	`ACGCC-/TGTGGGGT`	2	--	cds¹		0	--	--	--	--
rs201997719^1,2	--	--	152340425(+)	`CGTATC/GGTGAG`	2	--	ds500¹		0	--	--	--	--
rs201232151^1,2	--	--	152339071(+)	`CAAAGC/TGTTTC`	4	A V	mis¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for PNMA6A (152240839 - 152340864 bp)

Structural Variations
Database of Genomic Variants (DGV) 5 variations for PNMA6A: About this table

Variant ID	Type	Subtype	PubMed ID
nsv9997	CNV	Gain	18304495
esv33199	CNV	Gain+Loss	17666407
essv6402	CNV	CNV	17122850
dgv2494e1	CNV	Complex	17122850
nsv7467	OTHER	Inversion	18451855

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

PNMA6A for disorders About GeneDecksing

2 diseases for PNMA6A: About MalaCards

neurologic diseases neuronitis

Export disorders for PNMA6A gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for PNMA6A gene, integrated from 9 sources (see all 12):
(articles sorted by number of sources associating them with PNMA6A)

Utopia: connect your pdf to the dynamic
world of online information

Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 3} Ota T.... Sugano S. (2004)
A functional -1 ribosomal frameshift signal in the human paraneoplastic Ma3 gene. (PubMed id 16407312)¹ Wills N.M....Atkins J.F. (2006)
The LIFEdb database in 2006. (PubMed id 16381901)¹ Mehrle A....Wiemann S. (2006)
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)¹ Kimura K.... Sugano S. (2006)
The DNA sequence of the human X chromosome. (PubMed id 15772651)² Ross M.T.... Bentley D.R. (2005)
A human protein-protein interaction network: a resource for annotating the proteome. (PubMed id 16169070)¹ Stelzl U.... Wanker E.E. (2005)
The human PNMA family: novel neuronal proteins implicated in paraneoplastic neurological disease. (PubMed id 16214224)¹ Schueller M.... Voltz R. (2005)
Comprehensive proteomic analysis of human Par protein complexes reveals an interconnected protein network. (PubMed id 14676191)¹ Brajenovic M.... Drewes G. (2004)
From ORFeome to biology: a functional genomics pipeline. (PubMed id 15489336)¹ Wiemann S....Poustka A. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 84968	HGNC: 28248	AceView: PNMA6A	Ensembl:ENSG00000224201	euGenes: HUgn84968
ECgene: PNMA6A	H-InvDB: PNMA6A

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for PNMA6A	Pharmacogenomics, SNPs, Pathways

Intellectual Property for PNMA6A gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for PNMA6A gene:
Search GeneIP for patents involving PNMA6A

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

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About This Section


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	Gene Synthesis
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	Codon Optimization
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PNMA6A

	SwitchGear 3'UTR luciferase reporter plasmids for PNMA6A
	SwitchGear Promoter luciferase reporter plasmids for PNMA6A

Search ThermoFisher Antibodies for PNMA6A

Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat PNMA6A

	inGenious Targeting Laboratory - Custom generated mouse model solutions for PNMA6A
	inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for PNMA6A

Customized:

	stable knockdown cell line services for PNMA6A
	inducible knockdown cell line services for PNMA6A
	design and validation of potent shRNA sequences against PNMA6A
	adenovirus for potent knockdown of PNMA6A
	stable overexpressing cell line services for PNMA6A
	inducible overexpressing cell line services for PNMA6A
	adenovirus for overexpression of PNMA6A

LSBio Antibodies in human, mouse, rat for PNMA6A

GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013

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Category			TGFB1 (GIFtS: 73) transforming growth factor, beta 1
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PNMA6A Gene

Paraneoplastic Ma Antigen Family Member 6A

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PNMA6A Gene

Paraneoplastic Ma Antigen Family Member 6A

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