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Aliases for PMVK Gene

Aliases for PMVK Gene

  • Phosphomevalonate Kinase 2 3
  • PMKASE 3 4
  • HPMK 3 4
  • EC 2.7.4.2 4
  • HUMPMKI 3
  • PMKA 3
  • PMKI 4
  • PMK 3

External Ids for PMVK Gene

Previous GeneCards Identifiers for PMVK Gene

  • GC01P148261
  • GC01M150628
  • GC01M151672
  • GC01M152113
  • GC01M152093
  • GC01M151711
  • GC01M153163
  • GC01M154897
  • GC01M126259

Summaries for PMVK Gene

Entrez Gene Summary for PMVK Gene

  • This gene encodes a peroxisomal enzyme that catalyzes the conversion of mevalonate 5-phosphate into mevalonate 5-diphosphate, the fifth reaction of the cholesterol biosynthetic pathway. Studies in rat show that the message level and the enzyme activity of this protein is regulated by sterol, and that this regulation is coordinated with 3-hydroxy-3-methylglutaryl coenzyme A reductase, the rate-limiting enzyme of cholesterol biosynthesis. [provided by RefSeq, Sep 2011]

GeneCards Summary for PMVK Gene

PMVK (Phosphomevalonate Kinase) is a Protein Coding gene. Diseases associated with PMVK include nutritional deficiency disease. Among its related pathways are Metabolism and Terpenoid backbone biosynthesis. GO annotations related to this gene include phosphomevalonate kinase activity.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PMVK Gene

Genomics for PMVK Gene

Regulatory Elements for PMVK Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for PMVK Gene

Chromosome:
1
Start:
154,924,732 bp from pter
End:
154,937,310 bp from pter
Size:
12,579 bases
Orientation:
Minus strand

Genomic View for PMVK Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PMVK Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PMVK Gene

Proteins for PMVK Gene

  • Protein details for PMVK Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q15126-PMVK_HUMAN
    Recommended name:
    Phosphomevalonate kinase
    Protein Accession:
    Q15126
    Secondary Accessions:
    • Q5TZW9

    Protein attributes for PMVK Gene

    Size:
    192 amino acids
    Molecular mass:
    21995 Da
    Quaternary structure:
    • Monomer.

    Three dimensional structures from OCA and Proteopedia for PMVK Gene

neXtProt entry for PMVK Gene

Proteomics data for PMVK Gene at MOPED

Post-translational modifications for PMVK Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for PMVK Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for PMVK Gene

Domains & Families for PMVK Gene

Gene Families for PMVK Gene

Protein Domains for PMVK Gene

Suggested Antigen Peptide Sequences for PMVK Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PMVK: view

No data available for UniProtKB/Swiss-Prot for PMVK Gene

Function for PMVK Gene

Molecular function for PMVK Gene

GENATLAS Biochemistry:
phosphomevalonate kinase ATP dependent,peroxisomal,converting melanovate 5-P into M5-PP in the pathway for the synthesis of cholesterol,and pathway for the synthesis of isoprenoids and cholesterol,a structural component of membranes and precursor for bile acids and steroid hormones,regulated by sterols
UniProtKB/Swiss-Prot BiophysicochemicalProperties:
Kinetic parameters: KM=25 uM for (R)-5-phosphomevalonate {ECO:0000269 PubMed:16519518, ECO:0000269 PubMed:9392419}; KM=0.26 mM for ATP {ECO:0000269 PubMed:16519518, ECO:0000269 PubMed:9392419}; Vmax=46.4 umol/min/mg enzyme with (R)-5-phosphomevalonate as substrate {ECO:0000269 PubMed:16519518, ECO:0000269 PubMed:9392419}; Vmax=52 umol/min/mg enzyme with ATP as substrate {ECO:0000269 PubMed:16519518, ECO:0000269 PubMed:9392419};
UniProtKB/Swiss-Prot CatalyticActivity:
ATP + (R)-5-phosphomevalonate = ADP + (R)-5-diphosphomevalonate.
UniProtKB/Swiss-Prot Induction:
By sterol.

Enzyme Numbers (IUBMB) for PMVK Gene

Gene Ontology (GO) - Molecular Function for PMVK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004631 phosphomevalonate kinase activity IDA 8663599
GO:0005524 ATP binding IDA 16519518
genes like me logo Genes that share ontologies with PMVK: view
genes like me logo Genes that share phenotypes with PMVK: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PMVK

In Situ Assay Products

Flow Cytometry Products

No data available for Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PMVK Gene

Localization for PMVK Gene

Subcellular locations from UniProtKB/Swiss-Prot for PMVK Gene

Peroxisome.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PMVK Gene COMPARTMENTS Subcellular localization image for PMVK gene
Compartment Confidence
cytosol 5
extracellular 5
peroxisome 5
chloroplast 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for PMVK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm --
GO:0005777 peroxisome IDA 10191291
GO:0005829 cytosol TAS --
GO:0016020 membrane IDA 19946888
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with PMVK: view

Pathways & Interactions for PMVK Gene

genes like me logo Genes that share pathways with PMVK: view

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays
    • Lipoprotein Signaling & Cholesterol Metabolism in human,mouse,rat

UniProtKB/Swiss-Prot Q15126-PMVK_HUMAN

  • Pathway: Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via mevalonate pathway; isopentenyl diphosphate from (R)-mevalonate: step 2/3

Gene Ontology (GO) - Biological Process for PMVK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006695 cholesterol biosynthetic process TAS --
GO:0008299 isoprenoid biosynthetic process --
GO:0016126 sterol biosynthetic process IDA 16519518
GO:0016310 phosphorylation IBA --
GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway IEA --
genes like me logo Genes that share ontologies with PMVK: view

No data available for SIGNOR curated interactions for PMVK Gene

Drugs & Compounds for PMVK Gene

(6) Drugs for PMVK Gene - From: NovoSeek, HMDB, IUPHAR, and DGIdb

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Adenosine triphosphate Approved Nutra 0
cholesterol Experimental Pharma Agonist 0
farnesyl diphosphate Experimental Pharma Antagonist 0
(R)-5-diphosphomevalonate Pharma Competitive, Inhibitor 0
ATP Pharma Activator 0

(9) Additional Compounds for PMVK Gene - From: NovoSeek and HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
ADP
  • Adenosindiphosphorsaeure
  • Adenosine 5'-pyrophosphate
  • Adenosine diphosphate
  • Adenosine pyrophosphate
  • Adenosine-5'-diphosphate
Antagonist, Gating inhibitor 58-64-0
(R)-Mevalonic acid-5-pyrophosphate
  • (R)-5-Diphosphomevalonic acid
  • 1,1,3,7-Tetrahydroxy-7-methyl-2,4-Dioxa-1,3-diphosphanonan-9-oate
  • 1,1,3,7-Tetrahydroxy-7-methyl-2,4-Dioxa-1,3-diphosphanonan-9-oic acid
  • 1,1,3,7-Tetrahydroxy-7-methyl-2,4-Dioxa-1,3-diphosphanonan-9-oic acid 1,3-dioxide
  • 5-Pyrophosphomevalonate
1492-08-6
(S)-5-Diphosphomevalonic acid
  • (S)-Mevalonic acid-5-pyrophosphate
  • 1,1,3,7-Tetrahydroxy-7-methyl-2,4-dioxa-1,3-diphosphanonan-9-oate
  • 1,1,3,7-Tetrahydroxy-7-methyl-2,4-dioxa-1,3-diphosphanonan-9-oic acid
  • 1,1,3,7-Tetrahydroxy-7-methyl-2,4-dioxa-1,3-diphosphanonan-9-oic acid ion(1-)1,3-dioxide
  • 5-Diphosphomevalonate
Mevalonic acid-5P
  • (R)-5-phosphomevalonate
  • (R)-5-phosphomevalonic acid
  • (R)-5-phosphomevaloonate
  • (R)-5-phosphomevaloonic acid
  • (R)-mevalonic acid 5-phosphate
73566-35-5
acetoacetyl coa
genes like me logo Genes that share compounds with PMVK: view

Transcripts for PMVK Gene

mRNA/cDNA for PMVK Gene

Unigene Clusters for PMVK Gene

Phosphomevalonate kinase:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PMVK

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PMVK Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5
SP1:
SP2:
SP3: -

Relevant External Links for PMVK Gene

GeneLoc Exon Structure for
PMVK
ECgene alternative splicing isoforms for
PMVK

Expression for PMVK Gene

mRNA expression in normal human tissues for PMVK Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for PMVK Gene

This gene is overexpressed in Peripheral blood mononuclear cells (12.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for PMVK Gene



SOURCE GeneReport for Unigene cluster for PMVK Gene Hs.30954

mRNA Expression by UniProt/SwissProt for PMVK Gene

Q15126-PMVK_HUMAN
Tissue specificity: Heart, liver, skeletal muscle, kidney, and pancreas. Lower level in brain, placenta and lung.
genes like me logo Genes that share expression patterns with PMVK: view

Protein tissue co-expression partners for PMVK Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for PMVK Gene

Orthologs for PMVK Gene

This gene was present in the common ancestor of animals.

Orthologs for PMVK Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia PMVK 35
  • 89.76 (n)
  • 90.1 (a)
PMVK 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PMVK 35
  • 89.06 (n)
  • 87.5 (a)
PMVK 36
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Pmvk 35
  • 86.63 (n)
  • 83.33 (a)
Pmvk 16
Pmvk 36
  • 83 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia PMVK 35
  • 97.74 (n)
  • 97.4 (a)
PMVK 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Pmvk 35
  • 87.85 (n)
  • 85.42 (a)
oppossum
(Monodelphis domestica)
Mammalia PMVK 36
  • 73 (a)
OneToOne
chicken
(Gallus gallus)
Aves PMVK 35
  • 66.21 (n)
  • 63.95 (a)
PMVK 36
  • 63 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii pmvk 35
  • 59.64 (n)
  • 55.14 (a)
pmvk 36
  • 49 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.5364 35
fruit fly
(Drosophila melanogaster)
Insecta CG10268 37
  • 43 (a)
CG10268 35
  • 53.9 (n)
  • 46.86 (a)
CG10268 36
  • 42 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000338 35
  • 56.59 (n)
  • 47.25 (a)
worm
(Caenorhabditis elegans)
Secernentea F32D8.13 35
  • 49.42 (n)
  • 46.51 (a)
F32D8.13 36
  • 40 (a)
OneToOne
Species with no ortholog for PMVK:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for PMVK Gene

ENSEMBL:
Gene Tree for PMVK (if available)
TreeFam:
Gene Tree for PMVK (if available)

Paralogs for PMVK Gene

No data available for Paralogs for PMVK Gene

Variants for PMVK Gene

Sequence variations from dbSNP and Humsavar for PMVK Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs877343 -- 154,937,536(-) AAACT(C/T)CTGGC upstream-variant-2KB
rs1109815 -- 154,936,792(+) AAGGA(A/G)CAATC utr-variant-5-prime, intron-variant, upstream-variant-2KB
rs1218594 -- 154,936,224(+) ccaca(A/G)gcacg intron-variant
rs1218595 -- 154,936,572(-) GGGAA(A/G)GGTGG intron-variant, upstream-variant-2KB
rs1891805 -- 154,932,364(+) TACTG(C/T)TCCTT reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for PMVK Gene

Variant ID Type Subtype PubMed ID
nsv464073 CNV Loss 19166990
nsv509502 CNV Insertion 20534489
nsv2977 CNV Loss 18451855
nsv872453 CNV Loss 21882294
nsv872454 CNV Loss 21882294

Variation tolerance for PMVK Gene

Residual Variation Intolerance Score: 76.18% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.60; 56.30% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PMVK Gene

HapMap Linkage Disequilibrium report
PMVK

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PMVK Gene

Disorders for PMVK Gene

MalaCards: The human disease database

(1) MalaCards diseases for PMVK Gene - From: NovoSeek

Disorder Aliases PubMed IDs
nutritional deficiency disease
  • carbamoyl-phosphate synthase i deficiency disease
- elite association
Search PMVK in MalaCards View complete list of genes associated with diseases

Relevant External Links for PMVK

Genetic Association Database (GAD)
PMVK
Human Genome Epidemiology (HuGE) Navigator
PMVK
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PMVK
genes like me logo Genes that share disorders with PMVK: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PMVK Gene

Publications for PMVK Gene

  1. Characterization of phosphomevalonate kinase: chromosomal localization, regulation, and subcellular targeting. (PMID: 10191291) Olivier L.M. … Krisans S.K. (J. Lipid Res. 1999) 2 23 67
  2. Molecular cloning of human phosphomevalonate kinase and identification of a consensus peroxisomal targeting sequence. (PMID: 8663599) Chambliss K.L. … Gibson K.M. (J. Biol. Chem. 1996) 2 23 67
  3. NMR dynamics investigation of ligand-induced changes of main and side-chain arginine N-H's in human phosphomevalonate kinase. (PMID: 20112895) Olson A.L. … Sem D.S. (J. Am. Chem. Soc. 2010) 23 67
  4. Mevalonate analogues as substrates of enzymes in the isoprenoid biosynthetic pathway of Streptococcus pneumoniae. (PMID: 20056424) Kudoh T. … Silverman R.B. (Bioorg. Med. Chem. 2010) 23 67
  5. Structure of the ternary complex of phosphomevalonate kinase: the enzyme and its family. (PMID: 19485344) Andreassi J.L. … Leyh T.S. (Biochemistry 2009) 23 67

Products for PMVK Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • Pathway & Disease-focused RT² Profiler PCR Arrays
    • Lipoprotein Signaling & Cholesterol Metabolism in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate PMVK
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for PMVK
    • Block miRNA regulation of PMVK using miScript Target Protectors

    Sources for PMVK Gene

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