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Aliases for PMS2P9 Gene

Aliases for PMS2P9 Gene

  • PMS1 Homolog 2, Mismatch Repair System Component Pseudogene 9 2 3 5
  • Postmeiotic Segregation Increased 2-Like Pseudogene 1 2 3
  • Postmeiotic Segregation Increased 2 Pseudogene 9 2 3
  • Postmeiotic Segregation Increased 2-Like 17 2 3
  • PMS2 Postmeiotic Segregation Increased 2 Pseudogene 3
  • PMS2L17 3
  • PMS2LP1 3
  • PMSR5 3

External Ids for PMS2P9 Gene

Previous HGNC Symbols for PMS2P9 Gene

  • PMS2LP1
  • PMS2L17

Previous GeneCards Identifiers for PMS2P9 Gene

  • GC07P076671

Summaries for PMS2P9 Gene

GeneCards Summary for PMS2P9 Gene

PMS2P9 (PMS1 Homolog 2, Mismatch Repair System Component Pseudogene 9) is a Pseudogene.

Additional gene information for PMS2P9 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PMS2P9 Gene

Genomics for PMS2P9 Gene

GeneHancer (GH) Regulatory Elements for PMS2P9 Gene

Promoters and enhancers for PMS2P9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I077535 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 30.6 +499.0 499022 5.4 HDGF HNRNPUL1 PKNOX1 CLOCK FOXA2 SMAD1 MLX ARNT ZFP64 ARID4B PTPN12 GC07M077535 RSBN1L FAM185BP PMS2P9 APTR DTX2P1 POMZP3 CCDC146 LOC105375363
GH07I076290 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 19.6 -744.9 -744925 8.9 HNRNPUL1 PKNOX1 CLOCK FOXA2 ARNT ARID4B NEUROD1 SIN3A DMAP1 IRF4 STAG3L1 PMS2P3 FAM185BP POMZP3 PMS2P9 NSUN5P1 DTX2P1 SRRM3 DTX2 SPDYE18
GH07I076372 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 21.8 -666.1 -666137 1.2 HDGF PKNOX1 ARNT ZNF280A POLR2B ZNF766 ARID2 FOS ATF7 ZNF263 SPDYE5 DTX2P1 PMS2P9 PMS2P3 DTX2 SPDYE17 SPDYE18 NSUN5P1 CCDC146 FAM185BP
GH07I076313 Enhancer 1.5 Ensembl ENCODE dbSUPER 20.2 -725.1 -725141 1.4 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A ZNF2 IRF4 YY1 STAG3L1 PMS2P3 FAM185BP NSUN5P1 SPDYE18 SPDYE5 POMZP3 PMS2P9 SPDYE17 LOC100422695
GH07I077796 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 12.5 +759.4 759446 4.5 HDGF FOXA2 PKNOX1 CLOCK ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B TMEM60 PHTF2 RSBN1L SPDYE18 FAM185BP SPDYE17 APTR PMS2P9 LOC100422695 CCDC146
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PMS2P9 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PMS2P9 Gene

Genomic Locations for PMS2P9 Gene
chr7:77,039,480-77,053,038
(GRCh38/hg38)
Size:
13,559 bases
Orientation:
Plus strand
chr7:76,668,797-76,682,355
(GRCh37/hg19)

Genomic View for PMS2P9 Gene

Genes around PMS2P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PMS2P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PMS2P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PMS2P9 Gene

Proteins for PMS2P9 Gene

Post-translational modifications for PMS2P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PMS2P9 Gene

Domains & Families for PMS2P9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PMS2P9 Gene

Function for PMS2P9 Gene

Phenotypes From GWAS Catalog for PMS2P9 Gene

Phenotypes for PMS2P9 Gene

genes like me logo Genes that share phenotypes with PMS2P9: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PMS2P9 Gene

Localization for PMS2P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PMS2P9 Gene

Pathways & Interactions for PMS2P9 Gene

SuperPathways for PMS2P9 Gene

No Data Available

Interacting Proteins for PMS2P9 Gene

Gene Ontology (GO) - Biological Process for PMS2P9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PMS2P9 Gene

Drugs & Compounds for PMS2P9 Gene

No Compound Related Data Available

Transcripts for PMS2P9 Gene

mRNA/cDNA for PMS2P9 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PMS2P9 Gene

No ASD Table

Relevant External Links for PMS2P9 Gene

GeneLoc Exon Structure for
PMS2P9
ECgene alternative splicing isoforms for
PMS2P9

Expression for PMS2P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PMS2P9 Gene

NURSA nuclear receptor signaling pathways regulating expression of PMS2P9 Gene:

PMS2P9
genes like me logo Genes that share expression patterns with PMS2P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PMS2P9 Gene

Orthologs for PMS2P9 Gene

Evolution for PMS2P9 Gene

ENSEMBL:
Gene Tree for PMS2P9 (if available)
TreeFam:
Gene Tree for PMS2P9 (if available)

No data available for Orthologs for PMS2P9 Gene

Paralogs for PMS2P9 Gene

No data available for Paralogs for PMS2P9 Gene

Variants for PMS2P9 Gene

Sequence variations from dbSNP and Humsavar for PMS2P9 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1002555528 -- 77,046,212(+) A/G intron_variant
rs1002586691 -- 77,043,577(+) C/T intron_variant
rs1003352887 -- 77,053,442(+) C/G downstream_transcript_variant
rs1003499751 -- 77,050,334(+) A/T intron_variant
rs1003592166 -- 77,052,131(+) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for PMS2P9 Gene

Variant ID Type Subtype PubMed ID
dgv1218e199 CNV deletion 23128226
dgv121n16 CNV insertion 17901297
dgv22n31 CNV gain 19718026
dgv232e55 CNV gain 17911159
dgv233e55 CNV loss 17911159
dgv6475n100 CNV gain 25217958
dgv6501n100 CNV gain 25217958
esv23975 CNV gain+loss 19812545
esv3368477 CNV duplication 20981092
esv34102 CNV loss 18971310
esv3426150 CNV duplication 20981092
esv3613784 CNV loss 21293372
nsv1034874 CNV loss 25217958
nsv1124971 CNV duplication 24896259
nsv1132651 CNV duplication 24896259
nsv428174 CNV gain 18775914
nsv471448 CNV gain 19718026
nsv482108 CNV gain 20164927
nsv508463 CNV deletion 20534489
nsv509212 CNV insertion 20534489
nsv526097 CNV gain 19592680
nsv5801 CNV deletion 18451855
nsv607593 CNV gain 21841781
nsv8164 CNV gain+loss 18304495
nsv820936 CNV deletion 20802225
nsv831038 CNV loss 17160897
nsv951362 CNV deletion 24416366
nsv967346 CNV duplication 23825009
nsv970544 CNV duplication 23825009
nsv981675 CNV duplication 23825009

Additional Variant Information for PMS2P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PMS2P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PMS2P9 Gene

Disorders for PMS2P9 Gene

Additional Disease Information for PMS2P9

No disorders were found for PMS2P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PMS2P9 Gene

Publications for PMS2P9 Gene

  1. Genomic organization of the human PMS2 gene family. (PMID: 8586419) Nicolaides NC … Kinzler KW (Genomics 1995) 2 3 58
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58

Products for PMS2P9 Gene

Sources for PMS2P9 Gene

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