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Aliases for PMS2P9 Gene

Aliases for PMS2P9 Gene

  • PMS1 Homolog 2, Mismatch Repair System Component Pseudogene 9 2 3 5
  • Postmeiotic Segregation Increased 2-Like Pseudogene 1 2 3
  • Postmeiotic Segregation Increased 2 Pseudogene 9 2 3
  • Postmeiotic Segregation Increased 2-Like 17 2 3
  • PMS2 Postmeiotic Segregation Increased 2 Pseudogene 3
  • PMS2L17 3
  • PMS2LP1 3
  • PMSR5 3

External Ids for PMS2P9 Gene

Previous HGNC Symbols for PMS2P9 Gene

  • PMS2LP1
  • PMS2L17

Previous GeneCards Identifiers for PMS2P9 Gene

  • GC07P076671

Summaries for PMS2P9 Gene

GeneCards Summary for PMS2P9 Gene

PMS2P9 (PMS1 Homolog 2, Mismatch Repair System Component Pseudogene 9) is a Pseudogene.

Additional gene information for PMS2P9 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PMS2P9 Gene

Genomics for PMS2P9 Gene

Regulatory Elements for PMS2P9 Gene

Enhancers for PMS2P9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H076301 1.6 Ensembl ENCODE dbSUPER 21.4 -732.7 -732731 10 HDGF FOXA2 PKNOX1 ARID4B SIN3A FEZF1 ZBTB7B YY1 SLC30A9 ZNF143 STAG3L1 PMS2P3 POMZP3 SPDYE5 SPDYE18 PMS2P9 DTX2P1 SPDYE17 NSUN5P1 SRRM3
GH07H077535 1.4 ENCODE dbSUPER 22.6 +499.0 499022 5 HNRNPUL1 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 PTPN12 APTR RSBN1L DTX2P1 PMS2P9 FAM185BP POMZP3 CCDC146 LOC105375363
GH07H076356 1.4 ENCODE dbSUPER 21.5 -680.9 -680869 4 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 PMS2P3 POMZP3 STAG3L1 SPDYE18 PMS2P9 DTX2P1 FAM185BP LOC100133091 NSUN5P1 SPDYE5
GH07H077695 1.1 ENCODE 21.5 +658.1 658114 4 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 APTR SPDYE18 RSBN1L PMS2P9 TMEM60 DTX2P1 FAM185BP SPDYE17 PHTF2 PTPN12
GH07H076290 2 FANTOM5 Ensembl ENCODE dbSUPER 11.5 -744.9 -744926 8 HNRNPUL1 PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF548 STAG3L1 PMS2P3 FAM185BP POMZP3 DTX2P1 SRRM3 PMS2P9 DTX2 SPDYE18 ENSG00000250778
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PMS2P9 on UCSC Golden Path with GeneCards custom track

Genomic Location for PMS2P9 Gene

Chromosome:
7
Start:
77,039,480 bp from pter
End:
77,053,038 bp from pter
Size:
13,559 bases
Orientation:
Plus strand

Genomic View for PMS2P9 Gene

Genes around PMS2P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PMS2P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PMS2P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PMS2P9 Gene

Proteins for PMS2P9 Gene

Post-translational modifications for PMS2P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PMS2P9 Gene

Domains & Families for PMS2P9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PMS2P9 Gene

Function for PMS2P9 Gene

Phenotypes From GWAS Catalog for PMS2P9 Gene

Phenotypes for PMS2P9 Gene

genes like me logo Genes that share phenotypes with PMS2P9: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for PMS2P9
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PMS2P9 Gene

Localization for PMS2P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PMS2P9 Gene

Pathways & Interactions for PMS2P9 Gene

SuperPathways for PMS2P9 Gene

No Data Available

Interacting Proteins for PMS2P9 Gene

Gene Ontology (GO) - Biological Process for PMS2P9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PMS2P9 Gene

Drugs & Compounds for PMS2P9 Gene

No Compound Related Data Available

Transcripts for PMS2P9 Gene

mRNA/cDNA for PMS2P9 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for PMS2P9
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for PMS2P9 Gene

No ASD Table

Relevant External Links for PMS2P9 Gene

GeneLoc Exon Structure for
PMS2P9
ECgene alternative splicing isoforms for
PMS2P9

Expression for PMS2P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PMS2P9 Gene

NURSA nuclear receptor signaling pathways regulating expression of PMS2P9 Gene:

PMS2P9
genes like me logo Genes that share expression patterns with PMS2P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PMS2P9 Gene

Orthologs for PMS2P9 Gene

Evolution for PMS2P9 Gene

ENSEMBL:
Gene Tree for PMS2P9 (if available)
TreeFam:
Gene Tree for PMS2P9 (if available)

No data available for Orthologs for PMS2P9 Gene

Paralogs for PMS2P9 Gene

No data available for Paralogs for PMS2P9 Gene

Variants for PMS2P9 Gene

Sequence variations from dbSNP and Humsavar for PMS2P9 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1002555528 -- 77,046,212(+) GGAAC(A/G)GTGGC intron-variant
rs1002586691 -- 77,043,577(+) CCATG(C/T)CTGGT intron-variant
rs1003352887 -- 77,053,442(+) TTATG(C/G)CTGGA intron-variant, downstream-variant-500B
rs1003499751 -- 77,050,334(+) ACCAC(A/T)ACCCC intron-variant
rs1003592166 -- 77,052,131(+) GACTT(C/T)GGGTG intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for PMS2P9 Gene

Variant ID Type Subtype PubMed ID
dgv1218e199 CNV deletion 23128226
dgv121n16 CNV insertion 17901297
dgv22n31 CNV gain 19718026
dgv232e55 CNV gain 17911159
dgv233e55 CNV loss 17911159
dgv6475n100 CNV gain 25217958
dgv6501n100 CNV gain 25217958
esv23975 CNV gain+loss 19812545
esv3368477 CNV duplication 20981092
esv34102 CNV loss 18971310
esv3426150 CNV duplication 20981092
esv3613784 CNV loss 21293372
nsv1034874 CNV loss 25217958
nsv1124971 CNV duplication 24896259
nsv1132651 CNV duplication 24896259
nsv428174 CNV gain 18775914
nsv471448 CNV gain 19718026
nsv482108 CNV gain 20164927
nsv508463 CNV deletion 20534489
nsv509212 CNV insertion 20534489
nsv526097 CNV gain 19592680
nsv5801 CNV deletion 18451855
nsv607593 CNV gain 21841781
nsv8164 CNV gain+loss 18304495
nsv820936 CNV deletion 20802225
nsv831038 CNV loss 17160897
nsv951362 CNV deletion 24416366
nsv967346 CNV duplication 23825009
nsv970544 CNV duplication 23825009
nsv981675 CNV duplication 23825009

Relevant External Links for PMS2P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PMS2P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PMS2P9 Gene

Disorders for PMS2P9 Gene

Relevant External Links for PMS2P9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PMS2P9

No disorders were found for PMS2P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PMS2P9 Gene

Publications for PMS2P9 Gene

  1. Genomic organization of the human PMS2 gene family. (PMID: 8586419) Nicolaides NC … Kinzler KW (Genomics 1995) 2 3 60
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 60

Products for PMS2P9 Gene

Sources for PMS2P9 Gene

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