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Aliases for PLVAP Gene

Aliases for PLVAP Gene

  • Plasmalemma Vesicle Associated Protein 2 3 5
  • Fenestrated-Endothelial Linked Structure Protein; PV-1 Protein 2 3
  • Fenestrated Endothelial-Linked Structure Protein 3 4
  • Plasmalemma Vesicle Protein 1 3 4
  • FELS 3 4
  • PV-1 3 4
  • PV1 3 4
  • Plasmalemma Vesicle-Associated Protein 3
  • Gp68 3

External Ids for PLVAP Gene

Previous GeneCards Identifiers for PLVAP Gene

  • GC19M017956
  • GC19M017855
  • GC19M017307
  • GC19M017323
  • GC19M017462
  • GC19M017028

Summaries for PLVAP Gene

GeneCards Summary for PLVAP Gene

PLVAP (Plasmalemma Vesicle Associated Protein) is a Protein Coding gene. Diseases associated with PLVAP include Thoracic Benign Neoplasm and Breast Benign Neoplasm. GO annotations related to this gene include protein homodimerization activity.

UniProtKB/Swiss-Prot for PLVAP Gene

  • Involved in the formation of stomatal and fenestral diaphragms of caveolae. May function in microvascular permeability.

Gene Wiki entry for PLVAP Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PLVAP Gene

Genomics for PLVAP Gene

Regulatory Elements for PLVAP Gene

Enhancers for PLVAP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G017336 1.4 ENCODE dbSUPER 22.6 +40.0 39995 2.5 CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF143 ZNF548 ZNF263 SP3 NFYC ENSG00000269578 MVB12A ENSG00000268743 C19orf44 MRPL34 PLVAP COLGALT1 ENSG00000268087 ABHD8 ENSG00000267904
GH19G017225 1.5 ENCODE dbSUPER 19.9 +150.5 150537 2.8 CREB3L1 AGO1 ZFP64 DMAP1 FEZF1 YY1 ZNF143 ZNF263 SP3 NFYC OCEL1 ENSG00000269578 MVB12A ENSG00000268087 COLGALT1 PLVAP C19orf44 SMIM7 PGLS F2RL3
GH19G017358 1.2 ENCODE dbSUPER 19.1 +18.9 18882 0.6 ATF1 CREB3L1 ARNT ZFP64 ARID4B SIN3A ZNF48 SLC30A9 ZNF766 ZNF143 PLVAP MVB12A BST2 ENSG00000269350 GTPBP3
GH19G017261 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.1 +116.4 116431 0.9 HDGF ATF1 MLX CREB3L1 ARNT ARID4B ZNF2 ZNF48 ZNF143 DEK ENSG00000269578 MVB12A OCEL1 ENSG00000268087 COLGALT1 PLVAP ENSG00000267904 ENSG00000268743 BABAM1 GTPBP3
GH19G018179 1.6 Ensembl ENCODE dbSUPER 11.6 -803.5 -803537 1.9 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 SIN3A ZNF2 ZBTB7B YY1 UPF1 PDE4C ENSG00000268030 PLVAP ENSG00000268938 MVB12A ENSG00000269439 MPV17L2 IFI30
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PLVAP on UCSC Golden Path with GeneCards custom track

Genomic Location for PLVAP Gene

Chromosome:
19
Start:
17,351,448 bp from pter
End:
17,377,350 bp from pter
Size:
25,903 bases
Orientation:
Minus strand

Genomic View for PLVAP Gene

Genes around PLVAP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PLVAP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PLVAP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PLVAP Gene

Proteins for PLVAP Gene

  • Protein details for PLVAP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BX97-PLVAP_HUMAN
    Recommended name:
    Plasmalemma vesicle-associated protein
    Protein Accession:
    Q9BX97
    Secondary Accessions:
    • Q86VP0
    • Q8N8Y0
    • Q8ND68
    • Q8TER8
    • Q9BZD5

    Protein attributes for PLVAP Gene

    Size:
    442 amino acids
    Molecular mass:
    50594 Da
    Quaternary structure:
    • Homodimer.

neXtProt entry for PLVAP Gene

Post-translational modifications for PLVAP Gene

  • Glycosylation at Asn83, Asn89, Asn113, and posLast=151151
  • Modification sites at PhosphoSitePlus

Other Protein References for PLVAP Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for PLVAP Gene

Domains & Families for PLVAP Gene

Protein Domains for PLVAP Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for PLVAP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PLVAP: view

No data available for Gene Families and UniProtKB/Swiss-Prot for PLVAP Gene

Function for PLVAP Gene

Molecular function for PLVAP Gene

UniProtKB/Swiss-Prot Function:
Involved in the formation of stomatal and fenestral diaphragms of caveolae. May function in microvascular permeability.
UniProtKB/Swiss-Prot Induction:
By phorbol myristate acetate (PMA) or VEGF in endothelial cell culture.

Gene Ontology (GO) - Molecular Function for PLVAP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 19420356
GO:0042803 protein homodimerization activity IEA --
genes like me logo Genes that share ontologies with PLVAP: view
genes like me logo Genes that share phenotypes with PLVAP: view

Animal Models for PLVAP Gene

MGI Knock Outs for PLVAP:

Animal Model Products

  • Taconic Biosciences Mouse Models for PLVAP

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for PLVAP Gene

Localization for PLVAP Gene

Subcellular locations from UniProtKB/Swiss-Prot for PLVAP Gene

Cell membrane; Single-pass type II membrane protein. Membrane, caveola; Single-pass type II membrane protein. Cytoplasm, perinuclear region. Note=Membrane-associated protein of caveolae. Found in fenestral and stomatal diaphragms in fenestrated endothelia and transendothelial channels. Also colocalized with CAV1 in perinuclear region. {ECO:0000250 UniProtKB:Q9WV78}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PLVAP gene
Compartment Confidence
plasma membrane 5
extracellular 5
mitochondrion 1
endoplasmic reticulum 1
cytosol 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for PLVAP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005886 plasma membrane IEA --
GO:0005901 colocalizes_with caveola IEA,IDA 19420356
GO:0009986 cell surface IDA 15155804
GO:0016020 membrane IEA --
genes like me logo Genes that share ontologies with PLVAP: view

Pathways & Interactions for PLVAP Gene

SuperPathways for PLVAP Gene

No Data Available

Gene Ontology (GO) - Biological Process for PLVAP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000165 MAPK cascade IDA 15155804
GO:0002693 positive regulation of cellular extravasation IMP 19420356
GO:0033209 tumor necrosis factor-mediated signaling pathway IDA 19420356
GO:0070528 NOT protein kinase C signaling IDA 15155804
genes like me logo Genes that share ontologies with PLVAP: view

No data available for Pathways by source and SIGNOR curated interactions for PLVAP Gene

Transcripts for PLVAP Gene

mRNA/cDNA for PLVAP Gene

Unigene Clusters for PLVAP Gene

Plasmalemma vesicle associated protein:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PLVAP Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7
SP1:
SP2:
SP3: -

Relevant External Links for PLVAP Gene

GeneLoc Exon Structure for
PLVAP
ECgene alternative splicing isoforms for
PLVAP

Expression for PLVAP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PLVAP Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PLVAP Gene

This gene is overexpressed in Thyroid (x5.4).

Protein differential expression in normal tissues from HIPED for PLVAP Gene

This gene is overexpressed in Pancreas (11.6), Stomach (6.7), Gallbladder (6.2), and Placenta (6.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for PLVAP Gene



NURSA nuclear receptor signaling pathways regulating expression of PLVAP Gene:

PLVAP

SOURCE GeneReport for Unigene cluster for PLVAP Gene:

Hs.107125

mRNA Expression by UniProt/SwissProt for PLVAP Gene:

Q9BX97-PLVAP_HUMAN
Tissue specificity: Expressed in lung, kidney, heart, aorta, placenta, muscle, pituitary gland, adrenals, mammary gland, bladder, lymph node, bone marrow, trachea, digestive tract, liver and tumor-associated endothelium.

Evidence on tissue expression from TISSUES for PLVAP Gene

  • Kidney(4.5)
  • Spleen(4.5)
  • Lymph node(4.4)
  • Nervous system(4.2)
  • Heart(2.3)
  • Blood(2.1)
  • Thyroid gland(2.1)
  • Muscle(2)
genes like me logo Genes that share expression patterns with PLVAP: view

Primer Products

No data available for Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for PLVAP Gene

Orthologs for PLVAP Gene

This gene was present in the common ancestor of chordates.

Orthologs for PLVAP Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PLVAP 35 34
  • 99.47 (n)
OneToOne
dog
(Canis familiaris)
Mammalia PLVAP 35 34
  • 84.58 (n)
OneToOne
cow
(Bos Taurus)
Mammalia PLVAP 35 34
  • 80.24 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia Plvap 34
  • 71 (n)
mouse
(Mus musculus)
Mammalia Plvap 34 16 35
  • 69.94 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 54 (a)
OneToMany
-- 35
  • 38 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia PLVAP 35
  • 43 (a)
OneToOne
chicken
(Gallus gallus)
Aves PLVAP 35
  • 24 (a)
OneToOne
Species where no ortholog for PLVAP was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for PLVAP Gene

ENSEMBL:
Gene Tree for PLVAP (if available)
TreeFam:
Gene Tree for PLVAP (if available)

Paralogs for PLVAP Gene

No data available for Paralogs for PLVAP Gene

Variants for PLVAP Gene

Sequence variations from dbSNP and Humsavar for PLVAP Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000053724 -- 17,378,309(+) AGGAA(A/G)CTGCA downstream-variant-500B, upstream-variant-2KB
rs1000245140 -- 17,376,849(+) TGAGG(A/T)AACTC intron-variant
rs1000264796 -- 17,361,564(+) TGCCA(A/C)CCCTG intron-variant
rs1000406358 -- 17,361,628(+) TCAAT(A/C)ACCTA intron-variant
rs1000554537 -- 17,370,660(+) ACTGC(C/T)GATGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PLVAP Gene

Variant ID Type Subtype PubMed ID
nsv1109170 CNV deletion 24896259
nsv833768 CNV loss 17160897

Variation tolerance for PLVAP Gene

Residual Variation Intolerance Score: 22.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.44; 28.20% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PLVAP Gene

Human Gene Mutation Database (HGMD)
PLVAP
SNPedia medical, phenotypic, and genealogical associations of SNPs for
PLVAP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PLVAP Gene

Disorders for PLVAP Gene

MalaCards: The human disease database

(3) MalaCards diseases for PLVAP Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
thoracic benign neoplasm
  • benign neoplasm of thorax
breast benign neoplasm
protein-losing enteropathy
  • enteropathy, exudative
- elite association - COSMIC cancer census association via MalaCards
Search PLVAP in MalaCards View complete list of genes associated with diseases

Relevant External Links for PLVAP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PLVAP
genes like me logo Genes that share disorders with PLVAP: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PLVAP Gene

Publications for PLVAP Gene

  1. cDNA and protein sequence, genomic organization, and analysis of cis regulatory elements of mouse and human PLVAP genes. (PMID: 11401446) Stan R.-V. … Palade G.E. (Genomics 2001) 2 3 4 22 64
  2. Plasmalemmal vesicle-associated protein (PLVAP) is expressed by tumour endothelium and is upregulated by vascular endothelial growth factor-A (VEGF). (PMID: 15971170) Strickland L.A. … Koeppen H. (J. Pathol. 2005) 3 4 22 64
  3. PV1 is a key structural component for the formation of the stomatal and fenestral diaphragms. (PMID: 15155804) Stan R.-V. … Niesman I.R. (Mol. Biol. Cell 2004) 3 4 22 64
  4. The prototype endothelial marker PAL-E is a leukocyte trafficking molecule. (PMID: 19420356) Keuschnigg J. … Jalkanen S. (Blood 2009) 3 22 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64

Products for PLVAP Gene

Sources for PLVAP Gene

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