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Aliases for PLGLB1 Gene

Aliases for PLGLB1 Gene

  • Plasminogen-Like B1 2 3
  • Plasminogen-Related Protein B 3 4
  • PLGP1 3 4
  • PLGL 3 4
  • PRGB 3 4
  • Type B Plasminogen Related 3
  • Plasminogen-Like 2
  • PLGLB1 PLGLB2 4
  • EC 3.4.21.7 63
  • PRP-B 3

External Ids for PLGLB1 Gene

Previous HGNC Symbols for PLGLB1 Gene

  • PLGL

Previous GeneCards Identifiers for PLGLB1 Gene

  • GC00U921621
  • GC02U900794
  • GC02M087083
  • GC02M087229

Summaries for PLGLB1 Gene

GeneCards Summary for PLGLB1 Gene

PLGLB1 (Plasminogen-Like B1) is a Protein Coding gene. An important paralog of this gene is PLGLB2.

UniProtKB/Swiss-Prot for PLGLB1 Gene

  • May bind noncovalently to lysine binding sites present in the kringle structures of plasminogen. This may interfere with the binding of fibrin or alpha-2-antiplasmin to plasminogen and may result in the localization of activity at sites necessary for extracellular matrix destruction

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PLGLB1 Gene

Genomics for PLGLB1 Gene

Regulatory Elements for PLGLB1 Gene

Genomic Location for PLGLB1 Gene

Chromosome:
2
Start:
87,002,559 bp from pter
End:
87,021,852 bp from pter
Size:
19,294 bases
Orientation:
Minus strand

Genomic View for PLGLB1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for PLGLB1 Gene

Proteins for PLGLB1 Gene

  • Protein details for PLGLB1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q02325-PLGB_HUMAN
    Recommended name:
    Plasminogen-like protein B
    Protein Accession:
    Q02325
    Secondary Accessions:
    • Q580R1

    Protein attributes for PLGLB1 Gene

    Size:
    96 amino acids
    Molecular mass:
    10971 Da
    Quaternary structure:
    No Data Available

neXtProt entry for PLGLB1 Gene

Proteomics data for PLGLB1 Gene at MOPED

Selected DME Specific Peptides for PLGLB1 Gene

Post-translational modifications for PLGLB1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for PLGLB1 Gene

Domains & Families for PLGLB1 Gene

Protein Domains for PLGLB1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q02325

UniProtKB/Swiss-Prot:

PLGB_HUMAN :
  • Contains 1 PAN domain.
Domain:
  • Contains 1 PAN domain.
genes like me logo Genes that share domains with PLGLB1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for PLGLB1 Gene

Function for PLGLB1 Gene

Molecular function for PLGLB1 Gene

UniProtKB/Swiss-Prot Function:
May bind noncovalently to lysine binding sites present in the kringle structures of plasminogen. This may interfere with the binding of fibrin or alpha-2-antiplasmin to plasminogen and may result in the localization of activity at sites necessary for extracellular matrix destruction

Enzyme Numbers (IUBMB) for PLGLB1 Gene

Phenotypes for PLGLB1 Gene

GenomeRNAi human phenotypes for PLGLB1:
genes like me logo Genes that share phenotypes with PLGLB1: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PLGLB1

In Situ Assay Products

Flow Cytometry Products

No data available for Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targets and HOMER Transcription for PLGLB1 Gene

Localization for PLGLB1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PLGLB1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PLGLB1 Gene COMPARTMENTS Subcellular localization image for PLGLB1 gene
Compartment Confidence
extracellular 5

Gene Ontology (GO) - Cellular Components for PLGLB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with PLGLB1: view

Pathways & Interactions for PLGLB1 Gene

SuperPathways for PLGLB1 Gene

No Data Available

Interacting Proteins for PLGLB1 Gene

Gene Ontology (GO) - Biological Process for PLGLB1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PLGLB1 Gene

Drugs & Compounds for PLGLB1 Gene

No Compound Related Data Available

Transcripts for PLGLB1 Gene

mRNA/cDNA for PLGLB1 Gene

(1) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for PLGLB1 Gene

Plasminogen-like B1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PLGLB1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PLGLB1 Gene

No ASD Table

Relevant External Links for PLGLB1 Gene

GeneLoc Exon Structure for
PLGLB1
ECgene alternative splicing isoforms for
PLGLB1

Expression for PLGLB1 Gene

mRNA expression in normal human tissues for PLGLB1 Gene

mRNA differential expression in normal tissues according to GTEx for PLGLB1 Gene

This gene is overexpressed in Liver (x18.9), Brain - Cerebellar Hemisphere (x5.3), and Brain - Cerebellum (x5.0).

Protein differential expression in normal tissues from HIPED for PLGLB1 Gene

This gene is overexpressed in Serum (59.0) and Skin (9.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for PLGLB1 Gene



SOURCE GeneReport for Unigene cluster for PLGLB1 Gene Hs.652174

genes like me logo Genes that share expression patterns with PLGLB1: view

Protein tissue co-expression partners for PLGLB1 Gene

- Elite partner

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for PLGLB1 Gene

Orthologs for PLGLB1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for PLGLB1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 97 (a)
OneToMany
Species with no ortholog for PLGLB1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for PLGLB1 Gene

ENSEMBL:
Gene Tree for PLGLB1 (if available)
TreeFam:
Gene Tree for PLGLB1 (if available)

Paralogs for PLGLB1 Gene

Paralogs for PLGLB1 Gene

(4) SIMAP similar genes for PLGLB1 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for PLGLB1 Gene

genes like me logo Genes that share paralogs with PLGLB1: view

Variants for PLGLB1 Gene

Sequence variations from dbSNP and Humsavar for PLGLB1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs2138304 -- 87,019,157(-) CAGTG(C/T)GCTCT intron-variant
rs12623802 -- 87,023,163(+) TGGGG(A/G)AAAAA upstream-variant-2KB
rs62140501 -- 87,023,494(-) GCTCA(A/G)TGTCC upstream-variant-2KB
rs62148338 -- 87,014,805(+) AGTTA(C/T)ATTTC intron-variant
rs62148339 -- 87,016,519(+) ACCAG(A/G)GAGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PLGLB1 Gene

Variant ID Type Subtype PubMed ID
nsv7316 OTHER Inversion 18451855
nsv874473 CNV Gain 21882294
dgv1214e1 CNV Complex 17122850
nsv519198 CNV Loss 19592680
nsv874475 CNV Loss 21882294
esv33176 CNV Loss 17666407
dgv1215e1 CNV Complex 17122850
dgv1216e1 CNV Complex 17122850
dgv1217e1 CNV Complex 17122850
nsv428398 CNV Loss 18775914
nsv516958 CNV Gain+Loss 19592680
dgv61n16 CNV Deletion 17901297
nsv834287 CNV Gain 17160897
nsv834288 CNV Gain 17160897

Variation tolerance for PLGLB1 Gene

Gene Damage Index Score: 1.31; 26.08% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PLGLB1 Gene

HapMap Linkage Disequilibrium report
PLGLB1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PLGLB1 Gene

Disorders for PLGLB1 Gene

Relevant External Links for PLGLB1

Genetic Association Database (GAD)
PLGLB1
Human Genome Epidemiology (HuGE) Navigator
PLGLB1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PLGLB1
genes like me logo Genes that share disorders with PLGLB1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PLGLB1 Gene

Publications for PLGLB1 Gene

  1. Co-transfer of vanA and aggregation substance genes from Enterococcus faecalis isolates in intra- and interspecies matings. (PMID: 17350988) Paoletti C. … Facinelli B. (J. Antimicrob. Chemother. 2007) 23 67
  2. Antiangiogenesis treatment combined with chemotherapy produces chondrosarcoma necrosis. (PMID: 12631627) Morioka H. … Hornicek F.J. (Clin. Cancer Res. 2003) 23 67
  3. Sphingosine 1-phosphate and cell migration: resistance to angiogenesis inhibitors. (PMID: 14550287) Morii T. … Weissbach L. (Biochem. Biophys. Res. Commun. 2003) 23 67
  4. Interaction of plasminogen-related protein B with endothelial and smooth muscle cells in vitro. (PMID: 12799192) Morioka H. … Weissbach L. (Exp. Cell Res. 2003) 23 67
  5. Expression of plasminogen-related gene B varies among normal tissues and increases in cancer tissues. (PMID: 10069369) Tateno T. … Ichinose A. (FEBS Lett. 1999) 23 67

Products for PLGLB1 Gene

Sources for PLGLB1 Gene

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