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PLGLB1 Gene

protein-coding   GIFtS: 40
GCID: GC02M087229

Plasminogen-Like B1

(Previous name: plasminogen-like)
(Previous symbol: PLGL)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Plasminogen-Like B11 2     plasminogen-like1
PLGL1 2 3 5     PRP-B2
PRGB2 3 5     Plasminogen-Like Protein B2
Plasminogen-Related Protein B2 3     Type B Plasminogen Related2
PLGP12 3     EC 3.4.21.78

External Ids:    HGNC: 90721   Entrez Gene: 53432   Ensembl: ENSG000001832817   OMIM: 1733405   UniProtKB: Q023253   

Export aliases for PLGLB1 gene to outside databases

Previous GC identifers: GC00U921621 GC02U900794 GC02M087083


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for PLGLB1 Gene:
PLGLB1 (plasminogen-like B1) is a protein-coding gene. An important paralog of this gene is PLGLB2.

UniProtKB/Swiss-Prot: PLGB_HUMAN, Q02325
Function: May bind noncovalently to lysine binding sites present in the kringle structures of plasminogen. This
may interfere with the binding of fibrin or alpha-2-antiplasmin to plasminogen and may result in the localization
of activity at sites necessary for extracellular matrix destruction




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000002.11  NC_018913.2  NT_022184.16  
Regulatory elements:
   Regulatory transcription factor binding sites in the PLGLB1 gene promoter:
         POU3F2 (N-Oct-5a)   POU3F2 (N-Oct-5b)   POU3F2   GATA-1   Meis-1b   FOXO1a   Meis-1a   MRF-2   FOXO1   Meis-1   
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat PLGLB1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2p11.2   Ensembl cytogenetic band:  2p11.2   HGNC cytogenetic band: 2p11.2

PLGLB1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
PLGLB1 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M087229:  view genomic region     (about GC identifiers)

Start:
87,229,682 bp from pter      End:
87,248,975 bp from pter
Size:
19,294 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
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UniProtKB/Swiss-Prot: PLGB_HUMAN, Q02325 (See protein sequence)
Recommended Name: Plasminogen-like protein B precursor  
Size: 96 amino acids; 10971 Da
Secondary accessions: Q580R1

Explore the universe of human proteins at neXtProt for PLGLB1: NX_Q02325

Explore proteomics data for PLGLB1 at MOPED

2 DME Specific Peptides for PLGLB1 (Q02325)
 CRAFQYHSK  FQYHSKEQQCV 


See PLGLB1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001027564.1  
ENSEMBL proteins: 
 ENSP00000386505   ENSP00000386975   ENSP00000387083   ENSP00000347933  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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3 InterPro protein domains:
 IPR003609 Pan_app
 IPR003014 PAN-1_domain
 IPR016351 Plasminogen-rel

Graphical View of Domain Structure for InterPro Entry Q02325

ProtoNet protein and cluster: Q02325

UniProtKB/Swiss-Prot: PLGB_HUMAN, Q02325
Similarity: Contains 1 PAN domain


Find genes that share domains with PLGLB1           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: PLGB_HUMAN, Q02325
Function: May bind noncovalently to lysine binding sites present in the kringle structures of plasminogen. This
may interfere with the binding of fibrin or alpha-2-antiplasmin to plasminogen and may result in the localization
of activity at sites necessary for extracellular matrix destruction

     Enzyme Number (IUBMB): EC 3.4.21.72

Animal Models:

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
PLGB_HUMAN, Q02325: Secreted
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
extracellular5

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005576extracellular region IEA--

Find genes that share ontologies with PLGLB1           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for PLGLB1
Interactions:

    Search GeneGlobe Interaction Network for PLGLB1

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for PLGLB1 (PLGB)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
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REFSEQ mRNAs for PLGLB1 gene: 
NM_001032392.2  

Unigene Cluster for PLGLB1:

Plasminogen-like B1
Hs.652174  [show with all ESTs]
Unigene Representative Sequence: NM_001032392
7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000409310 ENST00000409801 ENST00000409795 ENST00000478636 ENST00000355705(uc002ssd.3)
ENST00000494194 ENST00000467745
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12 DOTS entries:

DT.91938200  DT.86855200  DT.91748454  DT.92414250  DT.121025805  DT.121025681  DT.120933569  DT.121324519 
DT.40119955  DT.91671965  DT.92044277  DT.95361932 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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PLGLB1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: TACAAATATA
PLGLB1 Expression
About this image

PLGLB1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

PLGLB1 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.652174
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and chimp.

Orthologs for PLGLB1 gene from 1 species (see representative species )    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chimpanzee
(Pan troglodytes)
Mammalia --
Uncharacterized protein
97(a)
1 → many
2A(88181988-88191600)


ENSEMBL Gene Tree for PLGLB1 (if available)
TreeFam Gene Tree for PLGLB1 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for PLGLB1 gene
PLGLB21 2  
4 SIMAP similar genes for PLGLB1 using alignment to 2 protein entries:     PLGB_HUMAN (see all proteins):
PLG    PLGL    PLGLA    PLGLB2

Find genes that share paralogs with PLGLB1           About GenesLikeMe


1 Pseudogenes.org Pseudogene for PLGLB1
PGOHUM00000259795


(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for PLGLB1 (see all 50)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 2 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1822392651,2
--87242309(+) TTTTTG/TTTTTT 1 -- int10--------
rs2018532091,2
C--87242381(+) AATAAA/CTTTAC 1 -- int10--------
rs1999874031,2
C--87242384(+) AACTTC/TACCAG 1 -- int10--------
rs2014987831,2
F--87243445(+) AAACTG/ACATCT 2 /A /V mis11Minor allele frequency- A:0.02EU 539
rs1998078151,2
F--87243478(+) ACTTCC/TTGTTT 2 K R mis11Minor allele frequency- T:0.03EU 775
rs1999868851,2
C,F--87243501(+) ACACAT/CTGTTG 2 /Q syn11Minor allele frequency- C:0.30EU 790
rs1856781251,2
--87244286(+) ATTATA/GTCCAG 1 -- int10--------
rs2020135091,2
--87244806(+) CTCTCC/TTTGAC 2 R G mis10--------
rs2010854601,2
--87244921(+) AACTT-/GCTGTTT 1 -- int10--------
rs1893794841,2
C--87246280(+) AGAGCA/GCACTG 1 -- int10--------

HapMap Linkage Disequilibrium report for PLGLB1 (87229682 - 87248975 bp)

Structural Variations
     Database of Genomic Variants (DGV) Selected variations for PLGLB1 (see all 14):    About this table    
Variant IDTypeSubtypePubMed ID
dgv61n16CNV Deletion17901297
nsv519198CNV Loss19592680
esv33176CNV Loss17666407
nsv874475CNV Loss21882294
nsv428398CNV Loss18775914
nsv834287CNV Gain17160897
nsv834288CNV Gain17160897
nsv874473CNV Gain21882294
nsv516958CNV Gain+Loss19592680
dgv1215e1CNV Complex17122850

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 173340    OMIM disorders: --


Find genes that share disorders with PLGLB1           About GenesLikeMe

1 Novoseek inferred disease relationship for PLGLB1 gene    About this table

Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
tumors 0 11 12631627 (2), 12799192 (1)

Genetic Association Database (GAD): PLGLB1
Human Genome Epidemiology (HuGE) Navigator: PLGLB1 (3 documents)

Export disorders for PLGLB1 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for PLGLB1 gene, integrated from 10 sources (see all 14):
(articles sorted by number of sources associating them with PLGLB1)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Multiple members of the plasminogen-apolipoprotein(a) gene family associated with thrombosis. (PubMed id 1554698)1, 2, 3 Ichinose A. (Biochemistry 1992)
  2. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1, 4 Bailey S.D....Anand S. (Diabetes Care 2010)
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)1, 2 Hillier L.W.... Wilson R.K. (Nature 2005)
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  5. A plasminogen-related gene is expressed in cancer cells. (PubMed id 1379800)1, 2 Weissbach L. and Treadwell B.V. (Biochem. Biophys. Res. Commun. 1992)
  6. A gene homologous to plasminogen located on human chromosome 2q11-p11. (PubMed id 2714803)1, 3 Frank S.L....Lusis A.J. (Genomics 1989)
  7. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PubMed id 19913121)1 Talmud P.J.... . (Am. J. Hum. Genet. 2009)
  8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  9. Two types of abnormal genes for plasminogen in families with a predisposition for thrombosis. (PubMed id 1986355)1 Ichinose A.... Davie E.W. (Proc. Natl. Acad. Sci. U.S.A. 1991)
  10. Interaction of plasminogen-related protein B with endothelial and smooth muscle cells in vitro. (PubMed id 12799192)9 Morioka H....Weissbach L. (Exp. Cell Res. 2003)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Disorders
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 5343 HGNC: 9072 Ensembl:ENSG00000183281 euGenes: HUgn5343 ECgene: PLGLB1
H-InvDB: PLGLB1

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for PLGLB1 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for PLGLB1 gene:
Search GeneIP for patents involving PLGLB1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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