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Aliases for PLEKHG4 Gene

Aliases for PLEKHG4 Gene

  • Pleckstrin Homology And RhoGEF Domain Containing G4 2 3 5
  • Pleckstrin Homology Domain Containing, Family G (With RhoGef Domain) Member 4 2 3
  • PH Domain-Containing Family G Member 4 3 4
  • Puratrophin-1 2 3
  • PRTPHN1 3 4
  • Pleckstrin Homology Domain-Containing Family G Member 4 4
  • Purkinje Cell Atrophy Associated Protein 1 3
  • Purkinje Cell Atrophy-Associated Protein 1 4
  • Spinocerebellar Ataxia 4 2
  • ARHGEF44 3
  • SCA4 3

External Ids for PLEKHG4 Gene

Previous HGNC Symbols for PLEKHG4 Gene

  • SCA4

Previous GeneCards Identifiers for PLEKHG4 Gene

  • GC16P065870
  • GC16P053184

Summaries for PLEKHG4 Gene

Entrez Gene Summary for PLEKHG4 Gene

  • The protein encoded by this gene can function as a guanine nucleotide exchange factor (GEF) and may play a role in intracellular signaling and cytoskeleton dynamics at the Golgi apparatus. Polymorphisms in the region of this gene have been found to be associated with spinocerebellar ataxia in some study populations. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2015]

GeneCards Summary for PLEKHG4 Gene

PLEKHG4 (Pleckstrin Homology And RhoGEF Domain Containing G4) is a Protein Coding gene. Diseases associated with PLEKHG4 include Spinocerebellar Ataxia 4 and Indian Tick Typhus. GO annotations related to this gene include Rho guanyl-nucleotide exchange factor activity. An important paralog of this gene is PLEKHG4B.

UniProtKB/Swiss-Prot for PLEKHG4 Gene

  • Possible role in intracellular signaling and cytoskeleton dynamics at the Golgi.

Gene Wiki entry for PLEKHG4 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PLEKHG4 Gene

Genomics for PLEKHG4 Gene

Regulatory Elements for PLEKHG4 Gene

Enhancers for PLEKHG4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F067520 1.4 Ensembl ENCODE 22.3 +243.9 243923 1.6 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZDHHC1 ENSG00000260465 CENPT ENKD1 E2F4 ENSG00000263276 FBXL8 KIAA0895L PLEKHG4 ACD
GH16F067389 1.3 Ensembl ENCODE 21.7 +117.5 117460 11.5 PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF143 KLF13 ZNF263 SP3 SP5 PLEKHG4 LRRC36 ATP6V0D1 FHOD1 ZDHHC1 HSD11B2 ENSG00000260465 PRMT7 TPPP3
GH16F067310 1.6 FANTOM5 Ensembl ENCODE 17.4 +34.6 34632 2.9 HDGF PKNOX1 ATF1 BRCA1 ZNF2 GATA2 FOS SP3 JUNB TSHZ1 PLEKHG4 ZDHHC1 ENSG00000260465 RRAD ATP6V0D1 FHOD1 CBFB FAM65A PIR41644 PIR58758
GH16F067550 1.2 Ensembl ENCODE 22.3 +276.6 276624 6.3 ZFP64 ZNF493 ZNF121 KLF7 FOS ZNF202 ZNF263 REST ZNF518A ZNF623 ZDHHC1 ENSG00000260465 CENPT E2F4 ENKD1 ENSG00000263276 ACD ENSG00000270165 FBXL8 KIAA0895L
GH16F066871 1.6 FANTOM5 ENCODE 12.7 -403.7 -403670 5.1 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 CES2 E2F4 CA7 PLEKHG4 ENSG00000260465 FAM96B FBXL8 FHOD1 B3GNT9 LINC00920
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PLEKHG4 on UCSC Golden Path with GeneCards custom track

Promoters for PLEKHG4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001506007 1890 1601 CREB3L1 ARID4B SIN3A DMAP1 ZNF143 ZNF263 MXD4 REST SMARCB1 SMARCA4

Transcription factor binding sites by QIAGEN in the PLEKHG4 gene promoter:

Genomic Location for PLEKHG4 Gene

Chromosome:
16
Start:
67,277,510 bp from pter
End:
67,289,500 bp from pter
Size:
11,991 bases
Orientation:
Plus strand

Genomic View for PLEKHG4 Gene

Genes around PLEKHG4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PLEKHG4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PLEKHG4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PLEKHG4 Gene

Proteins for PLEKHG4 Gene

  • Protein details for PLEKHG4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q58EX7-PKHG4_HUMAN
    Recommended name:
    Puratrophin-1
    Protein Accession:
    Q58EX7
    Secondary Accessions:
    • Q4G0J8
    • Q4H485
    • Q56A69
    • Q9H7K4
    • Q9UFW0

    Protein attributes for PLEKHG4 Gene

    Size:
    1191 amino acids
    Molecular mass:
    130803 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH82974.1; Type=Frameshift; Positions=3; Evidence={ECO:0000305}; Sequence=BAB15765.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for PLEKHG4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PLEKHG4 Gene

Post-translational modifications for PLEKHG4 Gene

  • Ubiquitination at Lys 405, Lys 423, Lys 511, Lys 608, Lys 674, Lys 869, Lys 922, and Lys 1049
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for PLEKHG4 Gene

Domains & Families for PLEKHG4 Gene

Protein Domains for PLEKHG4 Gene

Suggested Antigen Peptide Sequences for PLEKHG4 Gene

Graphical View of Domain Structure for InterPro Entry

Q58EX7

UniProtKB/Swiss-Prot:

PKHG4_HUMAN :
  • Contains 1 DH (DBL-homology) domain.
Domain:
  • Contains 1 DH (DBL-homology) domain.
  • Contains 1 PH domain.
genes like me logo Genes that share domains with PLEKHG4: view

Function for PLEKHG4 Gene

Molecular function for PLEKHG4 Gene

UniProtKB/Swiss-Prot Function:
Possible role in intracellular signaling and cytoskeleton dynamics at the Golgi.

Gene Ontology (GO) - Molecular Function for PLEKHG4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005089 Rho guanyl-nucleotide exchange factor activity IEA --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with PLEKHG4: view
genes like me logo Genes that share phenotypes with PLEKHG4: view

Human Phenotype Ontology for PLEKHG4 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for PLEKHG4 Gene

Localization for PLEKHG4 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PLEKHG4 gene
Compartment Confidence
nucleus 4
cytosol 4

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for PLEKHG4 Gene

Pathways & Interactions for PLEKHG4 Gene

SuperPathways for PLEKHG4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PLEKHG4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035023 regulation of Rho protein signal transduction IEA --
GO:0090630 activation of GTPase activity IEA --
genes like me logo Genes that share ontologies with PLEKHG4: view

No data available for Pathways by source and SIGNOR curated interactions for PLEKHG4 Gene

Transcripts for PLEKHG4 Gene

Unigene Clusters for PLEKHG4 Gene

Pleckstrin homology domain containing, family G (with RhoGef domain) member 4:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PLEKHG4 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^
SP1: - - - -
SP2:
SP3:
SP4:
SP5: - -
SP6: - - - - - - - - - - - - - - - - - - -
SP7:
SP8: -
SP9: - - - - -

ExUns: 22 ^ 23 ^ 24a · 24b ^ 25a · 25b ^ 26a · 26b ^ 27a · 27b · 27c
SP1: -
SP2: -
SP3: -
SP4: -
SP5: -
SP6: - - - - - -
SP7:
SP8:
SP9:

Relevant External Links for PLEKHG4 Gene

GeneLoc Exon Structure for
PLEKHG4
ECgene alternative splicing isoforms for
PLEKHG4

Expression for PLEKHG4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PLEKHG4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PLEKHG4 Gene

This gene is overexpressed in Testis (x8.7).

Protein differential expression in normal tissues from HIPED for PLEKHG4 Gene

This gene is overexpressed in Plasma (37.2), Ovary (16.4), and Testis (14.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for PLEKHG4 Gene



Protein tissue co-expression partners for PLEKHG4 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of PLEKHG4 Gene:

PLEKHG4

SOURCE GeneReport for Unigene cluster for PLEKHG4 Gene:

Hs.188781

mRNA Expression by UniProt/SwissProt for PLEKHG4 Gene:

Q58EX7-PKHG4_HUMAN
Tissue specificity: Expressed in kidney, Leydig cells in the testis, epithelial cells in the prostate gland and Langerhans islet in the pancreas. Isoform 1 and isoform 3 are strongly expressed in Purkinje cells and to a lower extent in other neurons (at protein level). Widely expressed at low levels. More strongly expressed in testis and pancreas.
genes like me logo Genes that share expression patterns with PLEKHG4: view

Primer Products

Orthologs for PLEKHG4 Gene

This gene was present in the common ancestor of animals.

Orthologs for PLEKHG4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PLEKHG4 34 35
  • 98.15 (n)
dog
(Canis familiaris)
Mammalia PLEKHG4 34 35
  • 85.59 (n)
cow
(Bos Taurus)
Mammalia PLEKHG4 34 35
  • 84.99 (n)
mouse
(Mus musculus)
Mammalia Plekhg4 34 16 35
  • 80.55 (n)
rat
(Rattus norvegicus)
Mammalia Plekhg4 34
  • 80.39 (n)
oppossum
(Monodelphis domestica)
Mammalia PLEKHG4 35
  • 50 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PLEKHG4 35
  • 35 (a)
OneToOne
chicken
(Gallus gallus)
Aves PLEKHG4 34 35
  • 58.95 (n)
lizard
(Anolis carolinensis)
Reptilia PLEKHG4 35
  • 32 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia plekhg4 34
  • 53.09 (n)
zebrafish
(Danio rerio)
Actinopterygii plekhg4 34 35
  • 60 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG30456 35
  • 18 (a)
ManyToMany
CG33275 35
  • 18 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 53 (a)
OneToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.8422 34
Species where no ortholog for PLEKHG4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for PLEKHG4 Gene

ENSEMBL:
Gene Tree for PLEKHG4 (if available)
TreeFam:
Gene Tree for PLEKHG4 (if available)

Paralogs for PLEKHG4 Gene

Paralogs for PLEKHG4 Gene

genes like me logo Genes that share paralogs with PLEKHG4: view

Variants for PLEKHG4 Gene

Sequence variations from dbSNP and Humsavar for PLEKHG4 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs11860295 Likely benign 67,282,331(+) GGTGA(C/T)CCTGA nc-transcript-variant, reference, missense
rs3868142 Likely benign 67,286,320(-) CGGAG(C/T)GAGGC nc-transcript-variant, reference, missense
rs8044843 Likely benign 67,284,339(+) ACTGG(A/G)CCCCC nc-transcript-variant, reference, missense
rs10500540 -- 67,283,816(+) TGAAG(G/T)TGGTC intron-variant
rs111515262 -- 67,282,431(+) ACCTG(A/G)TAGGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PLEKHG4 Gene

Variant ID Type Subtype PubMed ID
nsv827708 CNV gain 20364138
nsv827707 CNV loss 20364138
nsv572906 CNV loss 21841781
nsv572905 CNV loss 21841781
nsv524492 CNV loss 19592680
nsv524363 CNV loss 19592680
nsv522852 CNV gain 19592680
nsv471092 CNV gain 18288195
nsv457513 CNV loss 19166990
nsv1144771 CNV deletion 24896259

Variation tolerance for PLEKHG4 Gene

Residual Variation Intolerance Score: 80.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 16.61; 97.82% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PLEKHG4 Gene

Human Gene Mutation Database (HGMD)
PLEKHG4
SNPedia medical, phenotypic, and genealogical associations of SNPs for
PLEKHG4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PLEKHG4 Gene

Disorders for PLEKHG4 Gene

MalaCards: The human disease database

(11) MalaCards diseases for PLEKHG4 Gene - From: OMIM, Orphanet, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
spinocerebellar ataxia 4
  • spinocerebellar ataxia type 4
indian tick typhus
queensland tick typhus
  • australian tick typhus
israeli tick typhus
  • israeli spotted fever
flinders island spotted fever
  • fisf
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for PLEKHG4

Genetic Association Database (GAD)
PLEKHG4
Human Genome Epidemiology (HuGE) Navigator
PLEKHG4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PLEKHG4
genes like me logo Genes that share disorders with PLEKHG4: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PLEKHG4 Gene

Publications for PLEKHG4 Gene

  1. Mutations of the puratrophin-1 (PLEKHG4) gene on chromosome 16q22.1 are not a common genetic cause of cerebellar ataxia in a European population. (PMID: 16491300) Wieczorek S. … Epplen J.T. (J. Hum. Genet. 2006) 2 3 22 46 64
  2. An autosomal dominant cerebellar ataxia linked to chromosome 16q22.1 is associated with a single-nucleotide substitution in the 5' untranslated region of the gene encoding a protein with spectrin repeat and Rho guanine-nucleotide exchange-factor domains. (PMID: 16001362) Ishikawa K. … Mizusawa H. (Am. J. Hum. Genet. 2005) 2 3 4 22 64
  3. [Study on the single-nucleotide substitution (c.-16C to T) of the PURATROPHIN-1 gene in Chinese patients with spinocerebellar ataxia]. (PMID: 19065522) Zhou Y. … Tang B. (Zhonghua Yi Xue Yi Chuan Xue Za Zhi 2008) 3 46 64
  4. Redefining the disease locus of 16q22.1-linked autosomal dominant cerebellar ataxia. (PMID: 17611710) Amino T. … Mizusawa H. (J. Hum. Genet. 2007) 3 4 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64

Products for PLEKHG4 Gene

Sources for PLEKHG4 Gene

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