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Aliases & Descriptions for PLD2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 3.1.4.4 3 | | PLD1C 3 | | hPLD2 3 |
| | | Descriptions |
|---|
| Choline phosphatase 2 2, 3 | | PLD 2 3 | | Phosphatidylcholine-hydrolyzing phospholipase D2 3 | | phospholipase D2 2 |
|
| | Search outside databases for aliases for PLD2 genePrevious GC identifers: GC17P005137 GC17P004661 GC17P004917 |
Summaries for PLD2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for PLD2: Phosphatidylcholine (PC)-specific phospholipases D (PLDs; EC 3.1.4.4) catalyze the hydrolysis of PC to produce phosphatidic acid and choline. Activation of PC-specific PLDs occurs as a consequence of agonist stimulation of both tyrosine kinase and G protein-coupled receptors. PC-specific PLDs have been proposed to function in regulated secretion, cytoskeletal reorganization, transcriptional regulation, and cell cycle control.[supplied by OMIM] UniProtKB/Swiss-Prot: PLD2_HUMAN, O14939Function: May have a role in signal-induced cytoskeletal regulation and/or endocytosis (By similarity)Gene Wiki entry for PLD2 |
Genomic Location for PLD2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the PLD2 gene 
Entrez Gene cytogenetic band: 17p13.1 Ensembl cytogenetic band: 17p13.2 HGNC cytogenetic band: 17p13.3PLD2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure GeneLoc location for GC17P004657:
(about GC identifiers)
Start:
|
4,657,378 bp from pter |
End:
|
4,673,694 bp from pter |
Size:
|
16,317 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000017.9 NT_010718.15
| Proteins for PLD2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: PLD2_HUMAN, O14939 (See
protein sequence)Recommended Name: Phospholipase D2 Size: 933 amino acids; 105987 Da
Subunit: Interacts with EGFR (By similarity). Interacts with PIP5K1A
Subcellular location: Membrane; Peripheral membrane protein (By similarity)
Secondary accessions: O43540 O43579 O43580 Q96BY3Alternative splicing: 3 isoforms: O14939-1 O14939-2 O14939-3 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002654.3
ENSEMBL proteins: ENSP00000263088
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for PLD2: Assays for PLD2: | Protein
Domains/ Families for PLD2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry O14939
ProtoNet protein and cluster: O14939 3 Blocks protein families: IPB001683 Phox-like IPB001736 Phospholipase D/Transphosphatidylase IPB001849 Pleckstrin-like
UniProtKB/Swiss-Prot: PLD2_HUMAN, O14939Similarity: Belongs to the phospholipase D familySimilarity: Contains 1 PH domainSimilarity: Contains 2 PLD phosphodiesterase domainsSimilarity: Contains 1 PX (phox homology) domain | Gene Function for PLD2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002663
Applied Biosystems Silencer® siRNAs for PLD2
Sigma-Aldrich siRNA for PLD2  Sigma-Aldrich shRNA for PLD2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002663                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002663                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002663 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002663
UniProtKB/Swiss-Prot: PLD2_HUMAN, O14939Function: May have a role in signal-induced cytoskeletal regulation and/or endocytosis (By similarity)Catalytic activity: A phosphatidylcholine + H(2)O = choline + a phosphatidateEnzyme regulation: Stimulated by phosphatidylinositol 4,5-bisphosphate and activated by the ADP-ribosylation factor-1 (ARF-1)Enzyme Number (IUBMB): EC 3.1.4.4 Genatlas biochemistry entry for PLD2:phospholipase D2,106kDa,phosphatidylcholine specific,widely expressed,involved in metabolic regulation,cardiac and brain function,senescence regulated secretion,mitogenesis and cytoskeletal changes5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for PLD2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5 Sigma-Aldrich "Your Favorite Gene" Pathways for PLD2 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for PLD2 
5/96 Interacting proteins for PLD2 (ENSP000002630883 O149391, 2) via UniProtKB, MINT, and/or STRING (see all 96
)About this table
5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
): About this table
|
Drugs & Compounds for PLD2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for PLD2 |
Browse Tocris compounds for PLD2 10/19 Novoseek chemical compound relationships for PLD2 gene (see all 19
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| butanol |
80.87 |
7 |
15722202 (1), 16236484 (1), 16964281 (1), 15919668 (1) (see all 7) |
| tert-butyl alcohol |
57.48 |
1 |
15919668 (1) |
| pip2 |
52.26 |
8 |
11551222 (5), 10413092 (2), 11706993 (1) |
| tyrosine |
47.52 |
31 |
9837959 (3), 15282299 (3), 15896299 (3), 11459228 (2) (see all 16) |
| sphingosine |
44.88 |
4 |
15081395 (1), 18296444 (1), 11719383 (1), 18424723 (1) |
| oleic acid |
33.98 |
15 |
12374567 (6), 10413092 (3) |
| lipid |
32.91 |
6 |
11032811 (2), 18946083 (1), 17597824 (1), 11706993 (1) |
| ceramides |
31.39 |
5 |
11551222 (4), 12829737 (1) |
| phosphatidylinositol |
30.49 |
1 |
16179605 (1) |
| threonine |
19.21 |
4 |
12014986 (1), 15031293 (1), 16520553 (1) |
About this table
|
Transcripts for PLD2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002663
Sigma-Aldrich siRNA for PLD2  Sigma-Aldrich shRNA for PLD2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002663 REFSEQ mRNAs for PLD2 gene: NM_002663.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002663               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002663                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002663                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002663  Additional cDNA sequence: AB209374.1 AF033850.1 AF035483.1 AF038440.1 AF038441.1 AK304246.1 AK314797.1 AY178289.1 BC015033.1 BC056871.1 CR600915.1 13 DOTS entries: DT.113677 DT.75102977 DT.100711879 DT.120900261 DT.100785448 DT.75102978 DT.91647319 DT.99944047 DT.99977013 DT.100757001 DT.91741670 DT.97814044 DT.97762903 24/155 AceView cDNA sequences (see all 155
):BX283768 AI867089 AI361359 BC015033 BE855751 AL711408 BM807149 BM700601 BQ614352 NM_002663 AI049997 BX115919 AL524142 BX412656 BU624336 BQ575318 BC056871 CR600915 BE887047 BM666553 BU630203 AW337325 CN481406 CK826333
highest scoring ESTs for PLD2:AF038440 AA302751 AA302752 AA418524 AA418601 AA428742 AA476855 AA632736 AA678646 AA968501 Unigene Cluster for PLD2: Phospholipase D2 Hs.104519 [show with all ESTs]Unigene Representative Sequence: AB209374
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for PLD2 (see all 7
)
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11a | · | 11b | ^ | 12 | ^ | 13 | ^ | 14a | · | 14b | ^ | 15a | · | 15b | · | 15c | ^ | 16 | ^ | 17a | · | 17b | ^ | 18 | ^ | 19a | · | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | - |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | - |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 19b | ^ | 20 | ^ | 21 | ^ | 22 | ^ | 23a | · | 23b | · | 23c | ^ | 24 | ^ | 25a | · | 25b | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for PLD2
1 Ensembl transcript including schematic representation: ENST00000263088
|
Expression for PLD2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| PLD2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for PLD2
1 / 2 / 3 3 probe-sets matching PLD2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CTGCAAAGGA
SOURCE GeneReport for Unigene cluster: Hs.104519
Expression variation in blood from EXPOLDB for PLD2 UniProtKB/Swiss-Prot: PLD2_HUMAN, O14939Tissue specificity: Ubiquitous |
Orthologs for PLD2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for PLD2 gene from 5/14 species (see all 14
)
About this table Species with no ortholog for PLD2
ENSEMBL Gene Tree for PLD2 | Paralogs for PLD2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for PLD2 gene
- PLD12
|
SNPs/Variants for PLD2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for PLD2 (up to first 250kb)
|
Disorders & Mutations for PLD2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 602384
10 Novoseek disease relationships for PLD2 gene
About this table
Human Gene Mutation Database: PLD2 Genetic Association Database: PLD2 Human Genome Epidemiology Navigator: PLD2 (2 documents)
|
Medical News for PLD2(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for PLD2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/190 PubMed articles for PLD2 gene (see all 190
):- Cloning and initial characterization of a human phospholipase D2 (hPLD2). ADP-ribosylation factor regulates hPLD2. (PubMed id 9582313)1, 2, 3, 4 Lopez I....Lambeth J.D. (1998)
- Interaction of the type Ialpha PIPkinase with phospholipase D: a role for the local generation of phosphatidylinositol 4, 5-bisphosphate in the regulation of PLD2 activity. (PubMed id 11032811)1, 3, 4 Divecha N.... D'Santos C. (2000)
- Characterization of human PLD2 and the analysis of PLD isoform splice variants. (PubMed id 9761774)1, 3, 4 Steed P.M.... Lasala D.J. (1998)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Association of a polymorphism of the phospholipase D2 gene with the prevalence of colorectal cancer. (PubMed id 12601529)3, 6 Yamada Y....Nozawa Y. (2003)
- Assignment of human PLD2 to chromosome band 17p13.1 by fluorescence in situ hybridization. (PubMed id 9858823)2, 3 Park S.H....Kim H. (1998)
- Effects of active and inactive phospholipase D2 on signal transduction, adhesion, migration, invasion, and metastasis in EL4 lymphoma cells. (PubMed id 18523140)1, 3 Knoepp S.M....Meier K.E. (2008)
- Activation of RBL-2H3 mast cells is dependent on tyrosine phosphorylation of phospholipase D2 by Fyn and Fgr. (PubMed id 15282299)1, 3 Choi W.S....Beaven M.A. (2004)
- Hydrogen peroxide induces association between glyceraldehyde 3-phosphate dehydrogenase and phospholipase D2 to facilitate phospholipase D2 activation in PC12 cells. (PubMed id 12753082)1, 3 Kim J.H....Ryu S.H. (2003)
- Inhibition of muscarinic receptor-linked phospholipase D activation by association with tubulin. (PubMed id 15548524)1, 3 Chae Y.C....Ryu S.H. (2005)
|
Search for PLD2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing PLD2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing PLD2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing PLD2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| Wikipedia | http://en.wikipedia.org/wiki/Phospholipase_D |
|
| | | About This Section
| --
| Services for PLD2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for PLD2:

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Incremental update: 13 Oct 2009
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