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Aliases for PLCL1 Gene

Aliases for PLCL1 Gene

  • Phospholipase C Like 1 (Inactive) 2 3 5
  • Phospholipase C-Related But Catalytically Inactive Protein 3 4
  • Protein Phosphatase 1, Regulatory Subunit 127 2 3
  • Phospholipase C-Deleted In Lung Carcinoma 3 4
  • Phospholipase C, Epsilon 2 3
  • Phospholipase C-Like 1 2 3
  • PLC-L1 3 4
  • PRIP 3 4
  • Phospholipase C Related, But Catalytically Inactive Protein 2
  • Inactive Phospholipase C-Like Protein 1 3
  • Phospholipase C Like 1 2
  • PPP1R127 3
  • PLDL1 3
  • PLCE 3
  • PLCL 3

External Ids for PLCL1 Gene

Previous HGNC Symbols for PLCL1 Gene

  • PLCE

Previous GeneCards Identifiers for PLCL1 Gene

  • GC02P197147
  • GC02P197661
  • GC02P198912
  • GC02P199151
  • GC02P199033
  • GC02P198774
  • GC02P198523
  • GC02P198377
  • GC02P198669
  • GC02P190521

Summaries for PLCL1 Gene

GeneCards Summary for PLCL1 Gene

PLCL1 (Phospholipase C Like 1 (Inactive)) is a Protein Coding gene. Among its related pathways are GABAergic synapse and Proton Pump Inhibitor Pathway, Pharmacodynamics. GO annotations related to this gene include calcium ion binding and phosphoric diester hydrolase activity. An important paralog of this gene is PLCL2.

UniProtKB/Swiss-Prot for PLCL1 Gene

  • Involved in an inositol phospholipid-based intracellular signaling cascade. Shows no PLC activity to phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol. Component in the phospho-dependent endocytosis process of GABA A receptor (By similarity). Regulates the turnover of receptors and thus contributes to the maintenance of GABA-mediated synaptic inhibition. Its aberrant expression could contribute to the genesis and progression of lung carcinoma. Acts as an inhibitor of PPP1C.

Additional gene information for PLCL1 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PLCL1 Gene

Genomics for PLCL1 Gene

Regulatory Elements for PLCL1 Gene

Enhancers for PLCL1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H197868 1.1 Ensembl ENCODE 15.3 +65.1 65138 2 PKNOX1 FEZF1 ZNF2 ZNF766 GATA2 ZSCAN5C SCRT2 RCOR1 ATF7 CEBPB PLCL1 GC02M197883 GC02P197830
GH02H197627 1.4 FANTOM5 Ensembl ENCODE 11 -176.4 -176427 1 PKNOX1 EBF1 RELA EED ATF7 RUNX3 IKZF2 CREM MAZ ZNF687 PLCL1 RFTN2 COQ10B GC02P197600
GH02H197803 1 ENCODE 12.9 +0.3 262 2 PKNOX1 ARNT ARID4B SIN3A GLIS2 ZNF143 FOS ATF7 NFYC REST PLCL1 SF3B1 RFTN2 LOC105373828
GH02H197704 1 ENCODE 12.8 -98.7 -98735 3 HDGF PKNOX1 ATF1 MLX ARID4B SIN3A DMAP1 GLI4 ZNF2 YY1 PLCL1 PIR59727 MARS2
GH02H197495 1.4 Ensembl ENCODE 8.8 -305.1 -305093 7 MLX ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 SP3 NFYC SF3B1 GTF3C3 NPM1P46 RNU6-1029P ANKRD44 ENSG00000202434 PLCL1 COQ10B HSPE1 GC02P197477
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PLCL1 on UCSC Golden Path with GeneCards custom track

Promoters for PLCL1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000128466 798 2801 PKNOX1 ARNT ARID4B SIN3A GLIS2 FOS ATF7 NFYC REST MBD2

Genomic Location for PLCL1 Gene

Chromosome:
2
Start:
197,804,602 bp from pter
End:
198,572,581 bp from pter
Size:
767,980 bases
Orientation:
Plus strand

Genomic View for PLCL1 Gene

Genes around PLCL1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PLCL1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PLCL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PLCL1 Gene

Proteins for PLCL1 Gene

  • Protein details for PLCL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q15111-PLCL1_HUMAN
    Recommended name:
    Inactive phospholipase C-like protein 1
    Protein Accession:
    Q15111
    Secondary Accessions:
    • Q3MJ90
    • Q53SD3
    • Q7Z3S3

    Protein attributes for PLCL1 Gene

    Size:
    1095 amino acids
    Molecular mass:
    122728 Da
    Quaternary structure:
    • Interacts with PPP2CA (By similarity). Interacts with Ins(1,4,5)P3, Ins(1,4,5,6)P4, GABARAP, GABA receptor beta subunits, GABA receptor gamma-2 subunits and PPP1C. May form a ternary complex with GABA receptor beta subunit and GABARAP. The formation of a ternary complex with GABA receptor beta subunit and GABARAP could be the key step for facilitating the association of GABARAP with the GABA receptor gamma-2 subunit and to allow it to be transported at the right destination.

    Alternative splice isoforms for PLCL1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PLCL1 Gene

Post-translational modifications for PLCL1 Gene

  • Phosphorylated by the catalytic subunit of PKA. Phosphorylation of Thr-93 resulted in dissociation of PPP1C from PRIP1 (By similarity).
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for PLCL1 Gene

Domains & Families for PLCL1 Gene

Gene Families for PLCL1 Gene

Suggested Antigen Peptide Sequences for PLCL1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PLCL1: view

No data available for UniProtKB/Swiss-Prot for PLCL1 Gene

Function for PLCL1 Gene

Molecular function for PLCL1 Gene

UniProtKB/Swiss-Prot Function:
Involved in an inositol phospholipid-based intracellular signaling cascade. Shows no PLC activity to phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol. Component in the phospho-dependent endocytosis process of GABA A receptor (By similarity). Regulates the turnover of receptors and thus contributes to the maintenance of GABA-mediated synaptic inhibition. Its aberrant expression could contribute to the genesis and progression of lung carcinoma. Acts as an inhibitor of PPP1C.

Phenotypes From GWAS Catalog for PLCL1 Gene

Gene Ontology (GO) - Molecular Function for PLCL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004435 phosphatidylinositol phospholipase C activity IEA --
GO:0004629 phospholipase C activity TAS 7633416
GO:0004871 signal transducer activity IEA --
GO:0008081 phosphoric diester hydrolase activity IEA --
GO:0016787 hydrolase activity IEA --
genes like me logo Genes that share ontologies with PLCL1: view
genes like me logo Genes that share phenotypes with PLCL1: view

Animal Models for PLCL1 Gene

MGI Knock Outs for PLCL1:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for PLCL1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for PLCL1 Gene

Localization for PLCL1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PLCL1 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PLCL1 gene
Compartment Confidence
cytosol 3
plasma membrane 2
extracellular 2
nucleus 2
cytoskeleton 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for PLCL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005737 cytoplasm IEA --
GO:0005886 plasma membrane IEA --
genes like me logo Genes that share ontologies with PLCL1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for PLCL1 Gene

Pathways & Interactions for PLCL1 Gene

genes like me logo Genes that share pathways with PLCL1: view

Pathways by source for PLCL1 Gene

1 GeneTex pathway for PLCL1 Gene
1 PharmGKB pathway for PLCL1 Gene
1 KEGG pathway for PLCL1 Gene

Interacting Proteins for PLCL1 Gene

Gene Ontology (GO) - Biological Process for PLCL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006629 lipid metabolic process IEA --
GO:0007165 signal transduction IEA --
GO:0007214 gamma-aminobutyric acid signaling pathway IEA --
GO:0016042 lipid catabolic process IEA --
GO:0032228 regulation of synaptic transmission, GABAergic IEA --
genes like me logo Genes that share ontologies with PLCL1: view

No data available for SIGNOR curated interactions for PLCL1 Gene

Drugs & Compounds for PLCL1 Gene

(4) Drugs for PLCL1 Gene - From: DrugBank and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Quinacrine Approved Pharma Target, inhibitor 6

(1) Additional Compounds for PLCL1 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with PLCL1: view

Transcripts for PLCL1 Gene

Unigene Clusters for PLCL1 Gene

Phospholipase C-like 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for PLCL1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for PLCL1 Gene

No ASD Table

Relevant External Links for PLCL1 Gene

GeneLoc Exon Structure for
PLCL1
ECgene alternative splicing isoforms for
PLCL1

Expression for PLCL1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PLCL1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PLCL1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.5) and Heart - Left Ventricle (x5.1).

Protein differential expression in normal tissues from HIPED for PLCL1 Gene

This gene is overexpressed in Spinal cord (15.3), Prostate (10.8), Frontal cortex (9.0), and Heart (7.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for PLCL1 Gene



NURSA nuclear receptor signaling pathways regulating expression of PLCL1 Gene:

PLCL1

SOURCE GeneReport for Unigene cluster for PLCL1 Gene:

Hs.153322

mRNA Expression by UniProt/SwissProt for PLCL1 Gene:

Q15111-PLCL1_HUMAN
Tissue specificity: Expressed in a variety of fetal and adult organs including brain, lung and kidney. Its expression was greatly reduced in small and non-small cell lung carcinoma. Isoform 1 is predominantly expressed in brain.

Evidence on tissue expression from TISSUES for PLCL1 Gene

  • Nervous system(4.5)
  • Heart(2.4)
  • Muscle(2.3)
genes like me logo Genes that share expression patterns with PLCL1: view

Primer Products

No data available for Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for PLCL1 Gene

Orthologs for PLCL1 Gene

This gene was present in the common ancestor of animals.

Orthologs for PLCL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PLCL1 33 34
  • 99.85 (n)
dog
(Canis familiaris)
Mammalia PLCL1 33 34
  • 92.36 (n)
oppossum
(Monodelphis domestica)
Mammalia PLCL1 34
  • 92 (a)
OneToOne
cow
(Bos Taurus)
Mammalia PLCL1 33 34
  • 91.93 (n)
rat
(Rattus norvegicus)
Mammalia Plcl1 33
  • 88.13 (n)
mouse
(Mus musculus)
Mammalia Plcl1 33 16 34
  • 88.07 (n)
chicken
(Gallus gallus)
Aves PLCL1 33 34
  • 79.07 (n)
lizard
(Anolis carolinensis)
Reptilia PLCL1 34
  • 82 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia plcl1 33
  • 74.77 (n)
zebrafish
(Danio rerio)
Actinopterygii plcl1 34
  • 53 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea pll-1 34
  • 40 (a)
ManyToMany
plc-4 34
  • 32 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 42 (a)
OneToMany
Species where no ortholog for PLCL1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PLCL1 Gene

ENSEMBL:
Gene Tree for PLCL1 (if available)
TreeFam:
Gene Tree for PLCL1 (if available)

Paralogs for PLCL1 Gene

Paralogs for PLCL1 Gene

(8) SIMAP similar genes for PLCL1 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with PLCL1: view

Variants for PLCL1 Gene

Sequence variations from dbSNP and Humsavar for PLCL1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000002221 -- 198,073,976(+) TTTTT(A/T)AAAAG intron-variant
rs1000011285 -- 197,935,907(+) CCTAT(A/G/T)CCAGT intron-variant
rs1000018593 -- 198,087,109(+) TAGAA(A/G)TGTGG intron-variant
rs1000028944 -- 198,001,655(+) TTCTC(A/G)TGGCT intron-variant, upstream-variant-2KB
rs1000035154 -- 198,150,292(+) AAGAC(A/C)TTGTC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for PLCL1 Gene

Variant ID Type Subtype PubMed ID
dgv2126n106 CNV deletion 24896259
esv1252338 CNV insertion 17803354
esv1623532 CNV insertion 17803354
esv2008876 CNV deletion 18987734
esv2572769 CNV insertion 19546169
esv2576992 CNV deletion 19546169
esv2632650 CNV deletion 19546169
esv2659675 CNV deletion 23128226
esv2671075 CNV deletion 23128226
esv2721338 CNV deletion 23290073
esv2721340 CNV deletion 23290073
esv2721341 CNV deletion 23290073
esv2721342 CNV deletion 23290073
esv3303882 CNV mobile element insertion 20981092
esv3308075 CNV mobile element insertion 20981092
esv3399296 CNV insertion 20981092
esv3560796 CNV deletion 23714750
esv3584264 CNV loss 25503493
esv3584265 CNV loss 25503493
esv3584266 CNV loss 25503493
esv3584267 CNV loss 25503493
esv3593914 CNV loss 21293372
esv3593915 CNV gain 21293372
esv3593917 CNV loss 21293372
esv3593919 CNV loss 21293372
esv988447 CNV deletion 20482838
nsv1009134 CNV gain 25217958
nsv1116820 CNV deletion 24896259
nsv1125712 CNV tandem duplication 24896259
nsv1125759 CNV deletion 24896259
nsv1149389 CNV deletion 26484159
nsv3100 CNV insertion 18451855
nsv3101 CNV deletion 18451855
nsv460016 CNV gain 19166990
nsv507059 OTHER sequence alteration 20534489
nsv584157 CNV gain 21841781
nsv834506 CNV gain 17160897
nsv834507 CNV gain 17160897

Variation tolerance for PLCL1 Gene

Residual Variation Intolerance Score: 5.94% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 13.72; 95.75% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PLCL1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PLCL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PLCL1 Gene

Disorders for PLCL1 Gene

Relevant External Links for PLCL1

Genetic Association Database (GAD)
PLCL1
Human Genome Epidemiology (HuGE) Navigator
PLCL1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PLCL1

No disorders were found for PLCL1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PLCL1 Gene

Publications for PLCL1 Gene

  1. PLCL1 rs7595412 variation is not associated with hip bone size variation in postmenopausal Danish women. (PMID: 20030815) Cauchi S … Froguel P (BMC medical genetics 2009) 3 22 45 60
  2. Identification of PLCL1 gene for hip bone size variation in females in a genome-wide association study. (PMID: 18776929) Liu YZ … Deng HW (PloS one 2008) 3 22 45 60
  3. Identification of a novel phospholipase C family gene at chromosome 2q33 that is homozygously deleted in human small cell lung carcinoma. (PMID: 7633416) Kohno T … Yokota J (Human molecular genetics 1995) 2 3 4 60
  4. A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. (PMID: 22219177) Tao S … Sun J (Carcinogenesis 2012) 3 45 60
  5. Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women. (PMID: 21507922) Ramsuran V … Ndung'u T (Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2011) 3 45 60

Products for PLCL1 Gene

Sources for PLCL1 Gene

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