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Aliases for PLA2G16 Gene

Aliases for PLA2G16 Gene

  • Phospholipase A2 Group XVI 2 3 5
  • Adipose-Specific Phospholipase A2 3 4
  • Renal Carcinoma Antigen NY-REN-65 3 4
  • Group XVI Phospholipase A1/A2 3 4
  • Phospholipase A2, Group XVI 2 3
  • H-Rev 107 Protein Homolog 3 4
  • HRAS-Like Suppressor 1 3 4
  • Adipose-Specific PLA2 2 3
  • HREV107-1 3 4
  • HREV107-3 3 4
  • HRASLS3 3 4
  • HREV107 3 4
  • AdPLA 3 4
  • HRSL3 3 4
  • Ca-Independent Phospholipase A1/2 3
  • Group XVI Phospholipase A2 3
  • HRAS-Like Suppressor 3 2
  • EC 3.1.1.32 4
  • H-REV107-1 3
  • EC 3.1.1.4 4

External Ids for PLA2G16 Gene

Previous HGNC Symbols for PLA2G16 Gene

  • HRASLS3

Previous GeneCards Identifiers for PLA2G16 Gene

  • GC11M063100
  • GC11M063341
  • GC11M059671

Summaries for PLA2G16 Gene

GeneCards Summary for PLA2G16 Gene

PLA2G16 (Phospholipase A2 Group XVI) is a Protein Coding gene. Diseases associated with PLA2G16 include monofixation syndrome and abnormal retinal correspondence. Among its related pathways are Metabolism and Glycerophospholipid biosynthesis. GO annotations related to this gene include phospholipase A2 activity and phosphatidylserine 1-acylhydrolase activity. An important paralog of this gene is RARRES3.

UniProtKB/Swiss-Prot for PLA2G16 Gene

  • Exhibits PLA1/2 activity, catalyzing the calcium-independent hydrolysis of acyl groups in various phosphatidylcholines (PC) and phosphatidylethanolamine (PE). For most substrates, PLA1 activity is much higher than PLA2 activity. Specifically catalyzes the release of fatty acids from phospholipids in adipose tissue (By similarity). N- and O-acylation activity is hardly detectable. Might decrease protein phosphatase 2A (PP2A) activity.

Gene Wiki entry for PLA2G16 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PLA2G16 Gene

Genomics for PLA2G16 Gene

Regulatory Elements for PLA2G16 Gene

Genomic Location for PLA2G16 Gene

Chromosome:
11
Start:
63,573,195 bp from pter
End:
63,616,926 bp from pter
Size:
43,732 bases
Orientation:
Minus strand

Genomic View for PLA2G16 Gene

Genes around PLA2G16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PLA2G16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PLA2G16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PLA2G16 Gene

Proteins for PLA2G16 Gene

  • Protein details for PLA2G16 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P53816-HRSL3_HUMAN
    Recommended name:
    HRAS-like suppressor 3
    Protein Accession:
    P53816
    Secondary Accessions:
    • B2R7Q4
    • B7XAK5
    • Q3SYI3
    • Q9HDD1

    Protein attributes for PLA2G16 Gene

    Size:
    162 amino acids
    Molecular mass:
    17937 Da
    Quaternary structure:
    • Interacts with PPP2R1A; this interaction might decrease PP2A activity.

    Three dimensional structures from OCA and Proteopedia for PLA2G16 Gene

neXtProt entry for PLA2G16 Gene

Proteomics data for PLA2G16 Gene at MOPED

Post-translational modifications for PLA2G16 Gene

  • Ubiquitination at Lys 73 and Lys 91
  • Modification sites at PhosphoSitePlus

Other Protein References for PLA2G16 Gene

Antibody Products

  • Santa Cruz Biotechnology (SCBT) Antibodies for PLA2G16

No data available for DME Specific Peptides for PLA2G16 Gene

Domains & Families for PLA2G16 Gene

Gene Families for PLA2G16 Gene

Protein Domains for PLA2G16 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for PLA2G16 Gene

Graphical View of Domain Structure for InterPro Entry

P53816

UniProtKB/Swiss-Prot:

HRSL3_HUMAN :
  • Belongs to the H-rev107 family.
Family:
  • Belongs to the H-rev107 family.
genes like me logo Genes that share domains with PLA2G16: view

Function for PLA2G16 Gene

Molecular function for PLA2G16 Gene

UniProtKB/Swiss-Prot BiophysicochemicalProperties:
Kinetic parameters: KM=300 uM for dipalmitoyl-PC {ECO:0000269 PubMed:19615464}; Vmax=2.57 umol/min/mg enzyme with dipalmitoyl-PC as substrate {ECO:0000269 PubMed:19615464}; Vmax=267 nmol/min/mg enzyme with dipalmitoyl-PE as substrate {ECO:0000269 PubMed:19615464}; pH dependence: Optimum pH is 9. {ECO:0000269 PubMed:19615464};
UniProtKB/Swiss-Prot CatalyticActivity:
Phosphatidylcholine + H(2)O = 1-acylglycerophosphocholine + a carboxylate.
UniProtKB/Swiss-Prot CatalyticActivity:
Phosphatidylcholine + H(2)O = 2-acylglycerophosphocholine + a carboxylate.
UniProtKB/Swiss-Prot Function:
Exhibits PLA1/2 activity, catalyzing the calcium-independent hydrolysis of acyl groups in various phosphatidylcholines (PC) and phosphatidylethanolamine (PE). For most substrates, PLA1 activity is much higher than PLA2 activity. Specifically catalyzes the release of fatty acids from phospholipids in adipose tissue (By similarity). N- and O-acylation activity is hardly detectable. Might decrease protein phosphatase 2A (PP2A) activity.
UniProtKB/Swiss-Prot Induction:
By IFNG and IRF1.

Enzyme Numbers (IUBMB) for PLA2G16 Gene

genes like me logo Genes that share phenotypes with PLA2G16: view

Animal Model Products

CRISPR Products

miRNA for PLA2G16 Gene

miRTarBase miRNAs that target PLA2G16

No data available for Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PLA2G16 Gene

Localization for PLA2G16 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PLA2G16 Gene

Cytoplasm. Cytoplasm, perinuclear region. Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PLA2G16 Gene COMPARTMENTS Subcellular localization image for PLA2G16 gene
Compartment Confidence
cytosol 5
endoplasmic reticulum 2
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for PLA2G16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with PLA2G16: view

Pathways & Interactions for PLA2G16 Gene

genes like me logo Genes that share pathways with PLA2G16: view

SIGNOR curated interactions for PLA2G16 Gene

Inactivates:

Gene Ontology (GO) - Biological Process for PLA2G16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0036149 phosphatidylinositol acyl-chain remodeling TAS --
GO:0044281 small molecule metabolic process TAS --
genes like me logo Genes that share ontologies with PLA2G16: view

Drugs & Compounds for PLA2G16 Gene

(3) Drugs for PLA2G16 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
alpha-linolenic acid Approved Nutra Full agonist, Agonist 0
arachidonic acid Experimental Nutra Activator 27
linoleic acid Pharma Full agonist, Agonist 0

(1) Additional Compounds for PLA2G16 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Water
  • Dihydrogen oxide
  • Steam
7732-18-5
genes like me logo Genes that share compounds with PLA2G16: view

Transcripts for PLA2G16 Gene

Unigene Clusters for PLA2G16 Gene

Phospholipase A2, group XVI:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PLA2G16 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d · 7e
SP1: - - -
SP2: - - - -
SP3: - -
SP4:
SP5: - - -
SP6: - - -

Relevant External Links for PLA2G16 Gene

GeneLoc Exon Structure for
PLA2G16
ECgene alternative splicing isoforms for
PLA2G16

Expression for PLA2G16 Gene

mRNA expression in normal human tissues for PLA2G16 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PLA2G16 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.6).

Protein differential expression in normal tissues from HIPED for PLA2G16 Gene

This gene is overexpressed in Bone (16.7), Breast (16.2), Spinal cord (11.5), Frontal cortex (8.3), and Retina (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for PLA2G16 Gene



SOURCE GeneReport for Unigene cluster for PLA2G16 Gene Hs.502775

mRNA Expression by UniProt/SwissProt for PLA2G16 Gene

P53816-HRSL3_HUMAN
Tissue specificity: Widely expressed. low expression, if any, in hematopoietic cells and thymus. In testis, confined to round spermatids. Expressed in normal ovarian epithelial cells. Down-regulated in some ovarian carcinomas and testicular germ cell tumors.
genes like me logo Genes that share expression patterns with PLA2G16: view

Protein tissue co-expression partners for PLA2G16 Gene

Primer Products

In Situ Assay Products

Orthologs for PLA2G16 Gene

This gene was present in the common ancestor of chordates.

Orthologs for PLA2G16 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia PLA2G16 35
  • 84.7 (n)
  • 83.02 (a)
-- 36
  • 74 (a)
OneToMany
PLA2G16 36
  • 83 (a)
OneToMany
dog
(Canis familiaris)
Mammalia LOC476045 35
  • 87.24 (n)
  • 85.8 (a)
-- 36
  • 85 (a)
OneToMany
-- 36
  • 75 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Pla2g16 35
  • 83.74 (n)
  • 83.33 (a)
Pla2g16 16
Pla2g16 36
  • 83 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia PLA2G16 35
  • 97.33 (n)
  • 98.77 (a)
PLA2G16 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Pla2g16 35
  • 83.23 (n)
  • 83.65 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 52 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 78 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 64 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii si:ch211-229n2.6 36
  • 26 (a)
ManyToMany
Species with no ortholog for PLA2G16:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for PLA2G16 Gene

ENSEMBL:
Gene Tree for PLA2G16 (if available)
TreeFam:
Gene Tree for PLA2G16 (if available)

Paralogs for PLA2G16 Gene

Paralogs for PLA2G16 Gene

(4) SIMAP similar genes for PLA2G16 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with PLA2G16: view

Variants for PLA2G16 Gene

Sequence variations from dbSNP and Humsavar for PLA2G16 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs590570 -- 63,615,811(+) TACAG(A/G)CGTGC intron-variant, upstream-variant-2KB
rs591429 -- 63,599,749(+) GAGTT(G/T)GGGGA intron-variant
rs611110 -- 63,599,627(+) TTTCC(A/C)AAATA intron-variant
rs611165 -- 63,599,671(+) AGAAC(A/C)ATGGA intron-variant
rs611193 -- 63,599,687(+) GTCAC(A/C)ATTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PLA2G16 Gene

Variant ID Type Subtype PubMed ID
nsv352 CNV Insertion 18451855
esv33275 CNV Loss 17666407
esv32927 CNV Gain 17666407

Variation tolerance for PLA2G16 Gene

Residual Variation Intolerance Score: 73% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.05; 21.46% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PLA2G16 Gene

HapMap Linkage Disequilibrium report
PLA2G16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PLA2G16 Gene

Disorders for PLA2G16 Gene

MalaCards: The human disease database

(9) MalaCards diseases for PLA2G16 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
monofixation syndrome
abnormal retinal correspondence
aniseikonia
binocular vision disease
  • simultaneous visual perception without fusion
accommodative esotropia
  • esotropia with accommodative compensation
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for PLA2G16

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PLA2G16
genes like me logo Genes that share disorders with PLA2G16: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PLA2G16 Gene

Publications for PLA2G16 Gene

  1. Transcriptional and translational downregulation of H-REV107, a class II tumour suppressor gene located on human chromosome 11q11-12. (PMID: 9771974) Husmann K. … Schafer R. (Oncogene 1998) 2 3 4 23 67
  2. Characterization of the human tumor suppressors TIG3 and HRASLS2 as phospholipid-metabolizing enzymes. (PMID: 19615464) Uyama T. … Ueda N. (Biochim. Biophys. Acta 2009) 3 23
  3. Identification and functional characterization of adipose-specific phospholipase A2 (AdPLA). (PMID: 18614531) Duncan R.E. … Sul H.S. (J. Biol. Chem. 2008) 2 3
  4. The class II tumour suppressor gene H-REV107-1 is a target of interferon-regulatory factor-1 and is involved in IFNgamma-induced cell death in human ovarian carcinoma cells. (PMID: 11973642) Sers C. … Schafer R. (Oncogene 2002) 3 23
  5. LRAT-specific domain facilitates vitamin A metabolism by domain swapping in HRASLS3. (PMID: 25383759) Golczak M. … Palczewski K. (Nat. Chem. Biol. 2015) 3

Products for PLA2G16 Gene

Sources for PLA2G16 Gene

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