PKN1 Gene
protein-coding GIFtS : 66
GCID: GC19 P014544
protein kinase N1 (Previous name: protein kinase C-like 1 ) (Previous symbol: PRKCL1 )
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Aliasesfor PKN1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Protein Kinase N1 1 2 Serine-Threonine Protein Kinase N2 3 PAK11 2 3 5 PAK-12 3 PRK11 2 3 5 EC 2.7.11.133 8 PRKCL11 2 3 5 MGC462041 Protein Kinase C-Like 11 2 3 PKN-ALPHA2 PKN1 2 3 Protein Kinase C-Related Kinase 12 DBK1 2 Serine-Threonine Kinase N2 Protease-Activated Kinase 12 3 Serine/Threonine Protein Kinase N2 Protein Kinase C-Like PKN2 3 Serine/Threonine-Protein Kinase N12 Protein Kinase PKN-Alpha2 3 EC 2.7.118 Protein-Kinase C-Related Kinase 12 3
Export aliases for PKN1 gene to outside databases Previous GC identifers: GC19P014400 GC19P014406 GC19P014121
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Summariesfor PKN1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for PKN1 : The protein encoded by this gene belongs to the protein kinase C superfamily. This kinase is activated by Rho family of small G proteins and may mediate the Rho-dependent signaling pathway. This kinase can be activated by phospholipids and by limited proteolysis. The 3-phosphoinositide dependent protein kinase-1 (PDPK1/PDK1) is reported to phosphorylate this kinase, which may mediate insulin signals to the actin cytoskeleton. The proteolytic activation of this kinase by caspase-3 or related proteases during apoptosis suggests its role in signal transduction related to apoptosis. Alternatively spliced transcript variants encoding distinct isoforms have been observed. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: PKN1_HUMAN, Q16512 Function : PKC-related serine/threonine-protein kinase involved in various processes such as regulation of theintermediate filaments of the actin cytoskeleton, cell migration, tumor cell invasion and transcription regulation. Regulates the cytoskeletal network by phosphorylating proteins such as VIM and neurofilament proteins NEFH, NEFL and NEFM, leading to inhibit their polymerization. Phosphorylates 'Ser-575', 'Ser-637' and 'Ser-669' of MAPT/Tau, lowering its ability to bind to microtubules, resulting in disruption of tubulin assembly. Acts as a key coactivator of androgen receptor (ANDR)-dependent transcription, by being recruited to ANDR target genes and specifically mediating phosphorylation of 'Thr-11' of histone H3 (H3T11ph), a specific tag for epigenetic transcriptional activation that promotes demethylation of histone H3 'Lys-9' (H3K9me) by KDM4C/JMJD2C. Phosphorylates HDAC5, HDAC7 and HDAC9, leading to impair their import in the nucleus. Phosphorylates 'Thr-38' of PPP1R14A, 'Ser-159', 'Ser-163' and 'Ser-170' of MARCKS, and GFAP. Able to phosphorylate RPS6 in vitro Gene Wiki entry for PKN1 (Protein kinase N1)
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Genomic Viewsfor PKN1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000019.9 NC_018930.1 NT_011295.11 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the PKN1 gene promoter: RelA NF-kappaB1 c-Myc Other transcription factors Search SABiosciences Chromatin IP Primers for PKN1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PKN1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 19p13.12 Ensembl cytogenetic band: 19p13.12 HGNC cytogenetic band: 19p13.12 PKN1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19P014544: view genomic region
(about GC identifiers )
Start:
14,543,865 bp from pter
End:
14,582,679 bp from pter
Size:
38,815 bases
Orientation:
plus strand
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Proteinsfor PKN1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: PKN1_HUMAN, Q16512 (See
protein sequence )Recommended Name: Serine/threonine-protein kinase N1 Size : 942 amino acids; 103932 Da
Subunit : Interacts with ZA20D3 (By similarity). Interacts with ANDR. Interacts with PRKCB. Interacts (via REM 1 and REM2 repeats) with RAC1. Interacts (via REM 1 repeat) with RHOA. Interacts with RHOB. In case of infection, interacts with S.typhimurium protein sspH1. Interacts (via C-terminus) with PDPK1
Subcellular location : Cytoplasm. Nucleus. Endosome. Cell membrane; Peripheral membrane protein. Cleavage furrow.Midbody. Note=Associates with chromatin in a ligand-dependent manner. Localization to endosomes is mediated via its interaction with RHOB. Association to the cell membrane is dependent on Ser-374 phosphorylation. Accumulates during telophase at the cleavage furrow and finally concentrates around the midbody in cytokinesis
3 PDB 3D structures from and Proteopedia for PKN1 :1CXZ (3D)
  1URF (3D)
  2RMK (3D)
 
Secondary accessions : A8K7W5 B2R9R4 B3KVN3 Q15143 Q504U4 Q8IUV5 Q9UD44Alternative splicing : 3 isoforms : Q16512-1 Q16512-2 Q16512-3 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for PKN1: NX_Q16512 Post-translational modifications:
Autophosphorylated; preferably on serine. Phosphorylated during mitosis1
Activated by limited proteolysis with trypsin (By similarity)1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q16512 4/16 DME Specific Peptides for PKN1 (Q16512 ) (see all 16 )PKN1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_002732.3 NP_998725.1 ENSEMBL proteins: ENSP00000467422 ENSP00000242783 ENSP00000465842 ENSP00000466367 ENSP00000343325 ENSP00000466819 ENSP00000465867 ENSP00000468497 Human Recombinant Protein Products: Gene Ontology (GO): 5/7 cellular component terms (GO ID links to tree view) (see all 7 ): About this table
PKN1 for ontologies About GeneDecksing PKN1 Antibody Products: Assay Products for PKN1:
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Protein
Domains / Familiesfor PKN1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
PKN1 for domains About GeneDecksing 5/10 InterPro domains/families (see all 10 ):
Graphical View of Domain Structure for InterPro Entry Q16512 ProtoNet protein and cluster: Q16512
4 Blocks protein families : IPB000008 C2 domain IPB000861 PKN/rhophilin/rhotekin rho-binding repeat IPB000961 Protein kinase C-terminal domain IPB011072 Protein kinase PKN/PRK1 UniProtKB/Swiss-Prot: PKN1_HUMAN, Q16512 Domain : The C1 domain does not bind the diacylglycerol (DAG)Similarity : Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamilySimilarity : Contains 1 AGC-kinase C-terminal domainSimilarity : Contains 1 C2 domainSimilarity : Contains 1 protein kinase domainSimilarity : Contains 3 REM (Hr1) repeats
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Functionfor PKN1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: PKN1_HUMAN, Q16512 Function : PKC-related serine/threonine-protein kinase involved in various processes such as regulation of theintermediate filaments of the actin cytoskeleton, cell migration, tumor cell invasion and transcription regulation. Regulates the cytoskeletal network by phosphorylating proteins such as VIM and neurofilament proteins NEFH, NEFL and NEFM, leading to inhibit their polymerization. Phosphorylates 'Ser-575', 'Ser-637' and 'Ser-669' of MAPT/Tau, lowering its ability to bind to microtubules, resulting in disruption of tubulin assembly. Acts as a key coactivator of androgen receptor (ANDR)-dependent transcription, by being recruited to ANDR target genes and specifically mediating phosphorylation of 'Thr-11' of histone H3 (H3T11ph), a specific tag for epigenetic transcriptional activation that promotes demethylation of histone H3 'Lys-9' (H3K9me) by KDM4C/JMJD2C. Phosphorylates HDAC5, HDAC7 and HDAC9, leading to impair their import in the nucleus. Phosphorylates 'Thr-38' of PPP1R14A, 'Ser-159', 'Ser-163' and 'Ser-170' of MARCKS, and GFAP. Able to phosphorylate RPS6 in vitro Catalytic activity : ATP + a protein = ADP + a phosphoproteinEnzyme regulation : Kinase activity is activated upon binding to Rho proteins (RHOA, RHOB and RAC1). Activated bylipids, particularly cardiolipin and to a lesser extent by other acidic phospholipids. Activated by caspase-3 (CASP3) cleavage during apoptosis. Two specific sites, Thr-774 (activation loop of the kinase domain) and Ser-916 (turn motif), need to be phosphorylated for its full activation Biophysicochemical properties : Kinetic parameters: KM=20.6 uM for HDAC5;Enzyme Numbers (IUBMB): EC 2.7.11.13 1 2 EC 2.7.11 2
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PKN1 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PKN1 (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): PKN1 (NM_002741 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PKN1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PKN1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PKN1
Gene Ontology (GO): 5/14 molecular function terms (GO ID links to tree view) (see all 14 ): About this table
PKN1 for ontologies About GeneDecksing 2 GenomeRNAi human phenotypes for PKN1 :
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Pathways & Interactionsfor PKN1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/9 super-pathways (see all 9 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 G-protein signaling_RhoA regulation pathway 2 Translation_Translation regulation by Alpha-1 adrenergic receptors 3 G-protein signaling_Regulation of p38 and JNK signaling mediated by G-proteins 4 Ca, cAMP and Lipid Signaling 5 TNF-alpha/NF-kB Signaling Pathway
Pathway sources See GeneCards unified pathways Show all pathways 4 EMD Millipore Pathways for PKN1 1
Cell Signaling Technology (CST) Pathway for PKN1 4 GeneGo (Thomson Reuters) Pathways for PKN1 5 BioSystems Pathways for PKN1
PKN1 for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for PKN1 STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/49 Interacting proteins for PKN1 (Q16512 1 , 2 , 3 ENSP00000343325 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 49 )Interactant Interaction Details GeneCard External ID(s) CCDC85B Q15834 1 , 2 , 3 , ENSP00000311695 4 EBI-748186,EBI-739674 MINT-67214 I2D:
score=6 STRING: ENSP00000311695 MAPK12 P53778 1 , 3 , ENSP00000215659 4 EBI-748186,EBI-602406 I2D:
score=2 STRING: ENSP00000215659 SPRR2D P22532 2 , 3 , ENSP00000353542 4 MINT-8266634 I2D:
score=2 STRING: ENSP00000353542 ZNF282 Q9UDV7 2 , 3 , ENSP00000262085 4 MINT-8266645 I2D:
score=2 STRING: ENSP00000262085 HIST2H3C Q71DI3 3 , ENSP00000358154 4 I2D:
score=1 STRING: ENSP00000358154
About this table Gene Ontology (GO): 5/9 biological process terms (GO ID links to tree view) (see all 9 ): About this table
PKN1 for ontologies About GeneDecksing
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Drugs & Compoundsfor PKN1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
PKN1 for compounds About GeneDecksing Compounds for PKN1 available from Tocris Bioscience About this table Compound Action
CAS
# PIR 3.5 Negative control of IPA-3 (Cat. No. 3622) [6088-51-3] IPA 3 Group I p21-activated kinase (PAK) inhibitor [42521-82-4]
2 HMDB Compounds for PKN1 About this table 10/17 Novoseek chemical compound relationships for PKN1 gene (see all 17 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
threonine
71.6
26
12761194 (2), 8038606 (1), 9125115 (1), 9736660 (1) (see all 24 )
serine
66.3
28
8038606 (2), 12761194 (2), 7945381 (1), 9125115 (1) (see all 25 )
6 thioguanine
51.3
4
7714918 (1), 1309569 (1), 7680248 (1)
arachidonic acid
51.3
15
10467162 (3), 7945381 (2), 7711077 (2), 9637778 (1) (see all 8 )
purine
44.2
7
1309569 (2), 1400478 (1), 20132472 (1), 7680248 (1) (see all 5 )
sodium arsenite
43.2
1
9837746 (1)
fatty acid
27.5
6
9751706 (1), 11134534 (1), 9030526 (1), 9570957 (1) (see all 6 )
phosphatidylinositol
20.8
6
10995762 (1), 7673228 (1)
tyrosine
19.7
11
17726028 (2), 8038606 (1), 8798379 (1), 17229154 (1) (see all 6 )
adenine
12.6
1
1309569 (1)
Search CenterWatch for drugs/clinical trials and news about PKN1
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Transcriptsfor PKN1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for PKN1 gene (2 alternative transcripts): NM_002741.3 NM_213560.1 Unigene Cluster for PKN1:
Protein kinase N1 Hs.466044 [show with all ESTs ] Unigene Representative Sequence: BC094766 15 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000585619 ENST00000585839 ENST00000242783 (uc002myp.3 ) ENST00000586557 ENST00000587429 ENST00000590097 ENST00000342216 (uc002myq.3 ) ENST00000592794 ENST00000588200 ENST00000586900 ENST00000586237 ENST00000587215 ENST00000591461 ENST00000586039 ENST00000592960 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PKN1 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PKN1 (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): PKN1 (NM_002741 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PKN1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PKN1
Additional cDNA sequence: AK123007.1 AK292130.1 AK313886.1 BC018575.1 BC040061.1 BC094766.1 D26181.1 S75546.1 U33053.1
16 DOTS entries : DT.448711 DT.92443533
DT.100799316 DT.100651656 DT.101960711 DT.121444057 DT.92443507 DT.95168737 DT.92443502 DT.99975317 DT.100651662 DT.75154951 DT.100038449 DT.100868188 DT.92443504 DT.95168731 24/509 AceView cDNA sequences (see all 509 ):
AL524895 NM_002741 CD615549 BQ575984 BQ672981 BU192718 CR620491 BQ066704 BM478178 BX279836 BQ688884 BQ922282 AI929462 AW162061 BM917461 BQ051454 BM461782 BC018575 BQ953709 BQ053560 CB216708 BQ640709 CD615544 BQ058160 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for PKN1 (see all 12 ) About this scheme ExUns: 1 ^ 2 ^ 3a · 3b · 3c · 3d ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c · 8d ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15a · 15b ^ 16 ^ 17a · SP1 :             -   -       -                     -             SP2 :                     -                     -             SP3 :             -   -       -                     -             SP4 :                                                     SP5 :               -       -                                
ExUns: 17b ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23a · 23b · 23c ^ 24a · 24b ^ 25a · 25b ^ 26 ^ 27 SP1 : -                           -     SP2 : -                           -     SP3 :                           -     SP4 :                 -   -             SP5 :                              
ECgene alternative splicing isoforms for PKN1
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Expression for PKN1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section PKN1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: AGAAGGCTGC
About this image PKN1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table Stem Cell Differentiation: 2 LifeMap Cells Name Category PureStem™ progenitor EN2 (Embryonic Progenitor Cell)PureStem™ progenitor W10 (Embryonic Progenitor Cell)Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See PKN1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for PKN1 SOURCE GeneReport for Unigene cluster: Hs.466044 UniProtKB/Swiss-Prot: PKN1_HUMAN, Q16512 Tissue specificity : Found ubiquitously. Expressed in heart, brain, placenta, lung, skeletal muscle, kidney andpancreas. Expressed in numerous tumor cell lines, especially in breast tumor cells SABiosciences Custom PCR Arrays for PKN1 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for PKN1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat PKN1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat PKN1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat PKN1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PKN1
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Orthologsfor PKN1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for PKN1 gene from 5/21 species (see all 21 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
lizard (Anolis carolinensis)
Reptilia
PKN16
--
67(a)
1 ↔ 1
2(102437478-102460796)
tropical clawed frog (Xenopus tropicalis)
Amphibia
Str.154602
Transcribed sequence with moderate similarity to protein more
77.8(n)
 
BX713437.1
zebrafish (Danio rerio)
Actinopterygii
Dr.169852
Transcribed sequence with moderate similarity to protein more
81.23(n)
 
BM026089.1
fruit fly (Drosophila melanogaster)
Insecta
Pkn6
Protein kinase related to protein kinase N
32(a)
1 → many
2R(5139815-5172602)
worm (Caenorhabditis elegans)
Secernentea
pkn-16
--
28(a)
1 → many
X(10397183-10402516)
ENSEMBL Gene Tree for PKN1 (if available)TreeFam Gene Tree for PKN1 (if available)
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Paralogsfor PKN1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for PKN1 gene PRKCQ 2 PRKCH 2 PRKCB 2 PRKCI 2 PRKCE 2 PRKCA 2 PRKCD 2 PRKCZ 2 PKN3 2 PRKCG 2 PKN2 2 18/120 SIMAP similar genes for PKN1 using alignment to 7 protein entries: PKN1_HUMAN (see all proteins )
(see all similar genes ):EML2 IDNK PACSIN2 PLA2G6 RNF217 CHID1 LINC00269 WARS APOD TMEM44 DCTN5 FAM175A NF2 TMEM14B ZNF564 ZNF670 B3GALNT1 PLA2G15
PKN1 for paralogs About GeneDecksing
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Genomic Variantsfor PKN1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 19 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for PKN1 (14543865 - 14582679 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for PKN1 2 CNVs : 5090 10543
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing PKN1
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Disorders
/ Diseasesfor PKN1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
PKN1 for disorders About GeneDecksing
OMIM gene information: 601032
OMIM disorders : --16 diseases for PKN1 : About MalaCards paraneoplastic cerebellar degeneration cerebellar degeneration pheochromocytoma hepatitis b prostate cancer breast cancer alzheimer's disease gastric cancer breast carcinoma prostatitis carcinoma hepatitis hypoxia immunodeficiency melanoma neuronitis 9 Novoseek disease relationships for PKN1 gene About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
pheochromocytoma
22
4
1400478 (1), 1309569 (1), 20132472 (1)
colorectal carcinoma
21.1
8
15161701 (3), 19620048 (2), 16845324 (1)
metastasis
1.4
6
15161701 (4), 19610058 (1), 19620048 (1)
breast cancer
0.695
10
10766836 (3), 17604944 (2), 10945974 (2)
shock
0
6
9837746 (4), 9237690 (1)
tumors
0
6
17604944 (2), 15688034 (1), 16845324 (1), 19610058 (1) (see all 5 )
carcinoma
0
12
19427017 (7), 15161701 (1)
prostate cancer
0
2
19427017 (1), 12514133 (1)
cancer
0
1
10766836 (1)
Human Genome Epidemiology (HuGE) Navigator: PKN1 (4 documents) Export disorders for PKN1 gene to outside databases
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Publicationsfor PKN1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for PKN1 gene, integrated from 9 sources (see all 170 ): (articles sorted by number of sources associating them with PKN1) Utopia : connect your pdf to the dynamic world of online information
Molecular dissection of the interaction between the small G proteins Rac1 and RhoA and protein kinase C-related kinase 1 (PRK1). (PubMed id 14514689) 1 , 2 , 9 Owen D.... Mott H.R. (2003) Proteolytic activation of PKN by caspase-3 or related protease during apoptosis. (PubMed id 9751706) 1 , 2 , 9 Takahashi M....Ono Y. (1998) A novel protein kinase with leucine zipper-like sequences: its catalytic domain is highly homologous to that of protein kinase C. (PubMed id 8135837) 1 , 2 , 9 Mukai H. and Ono Y. (1994) The Rac1 polybasic region is required for interaction with its effector PRK1. (PubMed id 18006505) 1 , 2 , 9 Modha R....Mott H.R. (2008) The protein kinase N (PKN) gene PRKCL1/Prkcl1 maps to human chromosome 19p12-p13.1 and mouse chromosome 8 with close linkage to the myodystrophy (myd) mutation. (PubMed id 9570957) 1 , 3, 9 Bartsch J.W....Ono Y. (1998) A novel inducible transactivation domain in the androgen receptor: implications for PRK in prostate cancer. (PubMed id 12514133) 1 , 2 , 9 Metzger E....Schule R. (2003) PRK1 phosphorylates MARCKS at the PKC sites: serine 152, serine 156 and serine 163. (PubMed id 8557118) 1 , 2 , 9 Palmer R.H....Parker P.J. (1996) Cloning and expression patterns of two members of a novel protein- kinase-C-related kinase family. (PubMed id 7851406) 1 , 2 , 9 Palmer R.H.... Parker P.J. (1995) Biochemical and crystallographic characterization of a Rho effector domain of the protein serine/threonine kinase N in a complex with RhoA. (PubMed id 10388627) 1 , 2 , 9 Maesaki R....Hakoshima T. (1999) Protein kinase C-related kinase targets nuclear local ization signals in a subset of class IIa histone deacetylases. (PubMed id 20188095) 1 , 2 , 9 Harrison B.C....McKinsey T.A. (2010)
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External Searches for PKN1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing PKN1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
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Other Databases showing PKN1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing PKN1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for PKN1 gene: Search GeneIP for patents involving PKN1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor PKN1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for PKN1 OriGene shRNA RFP for PKN1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for PKN1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for PKN1 OriGene Protein Over-expression Lysate for PKN1 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for PKN1 OriGene 3'-UTR Clone for PKN1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PKN1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PKN1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for PKN1 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for PKN1 OriGene Custom Protein Services for PKN1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat PKN1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing PKN1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PKN1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat PKN1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat PKN1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat PKN1
Antibodies & Assays for PKN1  
Tocris compounds for PKN1
PKN1 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PKN1
ThermoFisher Antibodies for PKN1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PKN1
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